ONTOLOGY REPORT - ANNOTATIONS
Term: cochlea development
Accession: GO:0090102
browse the term
Definition: The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound.
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Adam10
ADAM metallopeptidase domain 10
involved_in
IEA ISO
GO_REF:0000107 (PMID:30639848)
Ensembl RGD
PMID:30639848
GO_REF:0000107
NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889
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Atp2b2
ATPase plasma membrane Ca2+ transporting 2
involved_in
ISO
(PMID:9668038)
RGD
PMID:9668038
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
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Calb1
calbindin 1
IEP
RGD
PMID:16120789
RGD:7175527
NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431
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Ccna2
cyclin A2
IEP
RGD
PMID:19429027
RGD:10054469
NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577
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Cdh1
cadherin 1
acts_upstream_of_or_within involved_in
ISO
MGI:2389021|MGI:3841145 (PMID:21925491) (PMID:30639848)
RGD
PMID:21925491 PMID:30639848
NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
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Cdh23
cadherin-related 23
acts_upstream_of_or_within
ISO IEA
MGI:1856228 (PMID:13336002) GO_REF:0000107
RGD Ensembl
PMID:13336002
GO_REF:0000107
NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
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Cecr2
CECR2, histone acetyl-lysine reader
acts_upstream_of_or_within
ISO IEA
MGI:3574034 (PMID:21246654) GO_REF:0000107
RGD Ensembl
PMID:21246654
GO_REF:0000107
NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451
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Dchs1
dachsous cadherin-related 1
acts_upstream_of_or_within
ISO IEA
MGI:4867020 (PMID:21303848) GO_REF:0000107
RGD Ensembl
PMID:21303848
GO_REF:0000107
NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
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Epha4
Eph receptor A4
involved_in
ISO IEA
(PMID:30639848) GO_REF:0000107
RGD Ensembl
PMID:30639848
GO_REF:0000107
NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
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Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
MGI:1931521 (PMID:17557302)
RGD
PMID:17557302
NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
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Gabra5
gamma-aminobutyric acid type A receptor subunit alpha 5
involved_in
ISO IEA
(PMID:17021187) GO_REF:0000107
RGD Ensembl
PMID:17021187
GO_REF:0000107
NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:108,268,776...108,380,917
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Gabrb2
gamma-aminobutyric acid type A receptor subunit beta 2
involved_in
ISO IEA
(PMID:17021187) GO_REF:0000107
RGD Ensembl
PMID:17021187
GO_REF:0000107
NCBI chr10:26,936,592...27,156,141
Ensembl chr10:26,936,551...27,151,251
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Gabrb3
gamma-aminobutyric acid type A receptor subunit beta 3
involved_in
ISO
(PMID:17021187)
RGD
PMID:17021187
NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:108,296,124...108,698,961
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Gata2
GATA binding protein 2
IEP
RGD
PMID:20006695
RGD:9479067
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
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Gata3
GATA binding protein 3
IEP
RGD
PMID:20006695
RGD:9479067
NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
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Grxcr1
glutaredoxin and cysteine rich domain containing 1
acts_upstream_of_or_within
ISO IEA
MGI:1856991 (PMID:13336002) GO_REF:0000107
RGD Ensembl
PMID:13336002
GO_REF:0000107
NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
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Hes1
hes family bHLH transcription factor 1
acts_upstream_of_or_within
ISO IEA
MGI:1341884|MGI:2149672 (PMID:18302773) GO_REF:0000107
RGD Ensembl
PMID:18302773
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
acts_upstream_of_or_within
ISO IEA
MGI:104853|MGI:104876|MGI:2447620 (PMID:18302773) GO_REF:0000107
RGD Ensembl
PMID:18302773
GO_REF:0000107
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Hoxa1
homeobox A1
involved_in
ISO
(PMID:16155570)
RGD
PMID:16155570
NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
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Ift20
intraflagellar transport 20
acts_upstream_of_or_within
ISO IEA
MGI:3817268 (PMID:25605782) GO_REF:0000107
RGD Ensembl
PMID:25605782
GO_REF:0000107
NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,432,633...63,438,124
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Ift27
intraflagellar transport 27
acts_upstream_of_or_within
ISO
MGI:4461616 (PMID:25605782)
RGD
PMID:25605782
NCBI chr 7:109,738,622...109,754,416
Ensembl chr 7:109,738,622...109,754,416
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Ift88
intraflagellar transport 88
acts_upstream_of_or_within
ISO
MGI:2135272 (PMID:18066062)
RGD
PMID:18066062
NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147
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Kcnk2
potassium two pore domain channel subfamily K member 2
IEP
RGD
PMID:15094499
RGD:2316534
NCBI chr13:103,297,387...103,494,686
Ensembl chr13:100,766,113...100,963,435
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Kcnk3
potassium two pore domain channel subfamily K member 3
IEP
RGD
PMID:15094499
RGD:2316534
NCBI chr 6:25,761,487...25,799,153
Ensembl chr 6:25,763,228...25,799,153
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Kcnq1
potassium voltage-gated channel subfamily Q member 1
involved_in
IEA ISO
GO_REF:0000107 MGI:1931858 (PMID:15891643)
Ensembl RGD
PMID:15891643
GO_REF:0000107
NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669
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LOC100360522
ribosomal protein P1-like
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348 Ensembl chr 8:8,431,465...8,435,348
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Mcm2
minichromosome maintenance complex component 2
involved_in
ISO IEA
(PMID:26196677) GO_REF:0000107
RGD Ensembl
PMID:26196677
GO_REF:0000107
NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
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Musk
muscle associated receptor tyrosine kinase
IEP
RGD
PMID:18420419
RGD:2317082
NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:73,058,121...73,171,932
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Myo7a
myosin VIIA
acts_upstream_of_or_within
ISO IEA
MGI:1856716 (PMID:13336002), (PMID:14198707), (PMID:6627025) GO_REF:0000107
RGD Ensembl
PMID:6627025 PMID:13336002 PMID:14198707
GO_REF:0000107 MGI:63006
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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Neurog1
neurogenin 1
involved_in
ISO IEA
UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) GO_REF:0000107
RGD Ensembl
PMID:23419067
GO_REF:0000107
NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571
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Ntrk3
neurotrophic receptor tyrosine kinase 3
IEP
RGD
PMID:10494076
RGD:2325650
NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
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Ocm
oncomodulin
IEP
RGD
PMID:16120789
RGD:7175527
NCBI chr12:10,535,619...10,596,705
Ensembl chr12:10,586,897...10,596,707
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Opa1
OPA1, mitochondrial dynamin like GTPase
IEP
RGD
PMID:17828551
RGD:13208944
NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
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Otof
otoferlin
IEP
RGD
PMID:17229086
RGD:2316502
NCBI chr 6:25,928,018...26,024,631
Ensembl chr 6:25,928,055...26,024,631
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Pafah1b1
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1
involved_in
ISO IEA
(PMID:23533177) GO_REF:0000107
RGD Ensembl
PMID:23533177
GO_REF:0000107
NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808
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Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:8951055)
UniProt RGD
PMID:8951055
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Psap
prosaposin
acts_upstream_of_or_within
ISO
MGI:1888378 (PMID:17167097)
RGD
PMID:17167097
NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
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Pvalb
parvalbumin
IEP
RGD
PMID:16120789
RGD:7175527
NCBI chr 7:109,772,939...109,787,954
Ensembl chr 7:109,772,593...109,784,561
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Rpgrip1l
Rpgrip1-like
acts_upstream_of_or_within
ISO
MGI:3716208 (PMID:22927466)
RGD
PMID:22927466
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
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Rplp1
ribosomal protein lateral stalk subunit P1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339
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Slc17a8
solute carrier family 17 member 8
IEP
RGD
PMID:24064385
RGD:9999152
NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079
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Slc26a5
solute carrier family 26 member 5
IEP
RGD
PMID:20006695
RGD:9479067
NCBI chr 4:13,210,260...13,249,289
Ensembl chr 4:13,210,260...13,249,289
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Slitrk6
SLIT and NTRK-like family, member 6
acts_upstream_of_or_within
ISO IEA
MGI:4417931 (PMID:19936227) GO_REF:0000107
RGD Ensembl
PMID:19936227
GO_REF:0000107
NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
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Sobp
sine oculis binding protein homolog
involved_in
ISO IEA
(PMID:18579736) GO_REF:0000107
RGD Ensembl
PMID:18579736
GO_REF:0000107
NCBI chr20:48,064,445...48,243,607
Ensembl chr20:46,482,765...46,663,541
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Tifab
TIFA inhibitor
involved_in
ISO
UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067)
RGD
PMID:23419067
NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592
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Vangl2
VANGL planar cell polarity protein 2
acts_upstream_of_or_within
ISO IEA
MGI:98715 (PMID:18066062) GO_REF:0000107
RGD Ensembl
PMID:18066062
GO_REF:0000107
NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
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Cthrc1
collagen triple helix repeat containing 1
acts_upstream_of_or_within
ISO IEA
MGI:1915838 (PMID:18606138) GO_REF:0000107
RGD Ensembl
PMID:18606138
GO_REF:0000107
NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
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Dvl1
dishevelled segment polarity protein 1
acts_upstream_of_or_within
ISO IEA
MGI:106613 (PMID:16116426) GO_REF:0000107
RGD Ensembl
PMID:16116426
GO_REF:0000107
NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664
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Dvl2
dishevelled segment polarity protein 2
acts_upstream_of_or_within
ISO IEA
MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950) GO_REF:0000107
RGD Ensembl
PMID:16116426 PMID:19008950
GO_REF:0000107
NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
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Dvl3
dishevelled segment polarity protein 3
acts_upstream_of_or_within
ISO
MGI:106613|MGI:2135272 (PMID:19008950)
RGD
PMID:19008950
NCBI chr11:80,365,446...80,382,641
Ensembl chr11:80,366,117...80,382,462
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Eya1
EYA transcriptional coactivator and phosphatase 1
acts_upstream_of_or_within
ISO
MGI:1857803 (PMID:10072433)
RGD
PMID:10072433
NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
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Frzb
frizzled-related protein
acts_upstream_of_or_within
ISO IEA
MGI:98958 (PMID:17433286) GO_REF:0000107
RGD Ensembl
PMID:17433286
GO_REF:0000107
NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
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Fzd2
frizzled class receptor 2
acts_upstream_of_or_within
ISO IEA
MGI:2135272 (PMID:20940229) GO_REF:0000107
RGD Ensembl
PMID:20940229
GO_REF:0000107
NCBI chr10:88,061,988...88,063,898
Ensembl chr10:87,561,326...87,565,334
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Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857509 (PMID:17395647)
RGD
PMID:17395647
NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
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Grhl3
grainyhead-like transcription factor 3
acts_upstream_of_or_within
ISO IEA
MGI:2135272 (PMID:20643356) GO_REF:0000107
RGD Ensembl
PMID:20643356
GO_REF:0000107
NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160
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Hoxa1
homeobox A1
involved_in
ISO
(PMID:16155570)
RGD
PMID:16155570
NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
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Hpn
hepsin
involved_in
ISS ISO
GO_REF:0000024 (PMID:20683358)
UniProt RGD
PMID:20683358
GO_REF:0000024
NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
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LOC100360522
ribosomal protein P1-like
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348 Ensembl chr 8:8,431,465...8,435,348
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Myo3a
myosin IIIA
involved_in
ISO
(PMID:26754646)
RGD
PMID:26754646
NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
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Myo3b
myosin IIIB
involved_in
ISO
(PMID:26754646)
RGD
PMID:26754646
NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
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Nectin1
nectin cell adhesion molecule 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:21798896)
Ensembl RGD
PMID:21798896
GO_REF:0000107
NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
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Nectin3
nectin cell adhesion molecule 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:21798896)
Ensembl RGD
PMID:21798896
GO_REF:0000107
NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519
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Neurog1
neurogenin 1
involved_in
ISO IEA
UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) GO_REF:0000107
RGD Ensembl
PMID:23419067
GO_REF:0000107
NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571
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Pax2
paired box 2
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857673 (PMID:16916509) UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
UniProt RGD
PMID:8951055 PMID:16916509 PMID:20727173
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pou3f4
POU class 3 homeobox 4
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:P70323 (PMID:18231833)
UniProt RGD
PMID:18231833
GO_REF:0000024
NCBI chr X:75,858,646...75,859,923
Ensembl chr X:75,858,646...75,859,923
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Ptk7
protein tyrosine kinase 7
acts_upstream_of_or_within
ISO IEA
MGI:3640803 (PMID:20704721) GO_REF:0000107
RGD Ensembl
PMID:20704721
GO_REF:0000107
NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494
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Rac1
Rac family small GTPase 1
acts_upstream_of_or_within
ISO
MGI:2663662|MGI:2663669 (PMID:20016102)
RGD
PMID:20016102
NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251
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Rplp1
ribosomal protein lateral stalk subunit P1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339
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Six1
SIX homeobox 1
acts_upstream_of_or_within
ISO IEA
MGI:2655195 (PMID:12874121) GO_REF:0000107
RGD Ensembl
PMID:12874121
GO_REF:0000107
NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
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Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:2385468|MGI:3841145 (PMID:20346939) GO_REF:0000107
UniProt RGD Ensembl
PMID:20346939
GO_REF:0000024 GO_REF:0000107
NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994
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Tbx1
T-box transcription factor 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2179136 (PMID:17825816) UniProtKB:P62515 (PMID:18231833)
UniProt RGD
PMID:17825816 PMID:18231833
GO_REF:0000024
NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
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Tbx18
T-box transcription factor 18
acts_upstream_of_or_within
ISO
MGI:3044915 (PMID:18353863)
RGD
PMID:18353863
NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058
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Tbx2
T-box transcription factor 2
involved_in
ISO IEA
(PMID:33795231) GO_REF:0000107
RGD Ensembl
PMID:33795231
GO_REF:0000107
NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
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Tifab
TIFA inhibitor
involved_in
ISO
UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067)
RGD
PMID:23419067
NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592
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Tshr
thyroid stimulating hormone receptor
acts_upstream_of_or_within
ISO IEA
(PMID:10575115) GO_REF:0000107
RGD Ensembl
PMID:10575115
GO_REF:0000107
NCBI chr 6:110,341,585...110,475,297
Ensembl chr 6:110,341,581...110,474,538
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Vangl2
VANGL planar cell polarity protein 2
acts_upstream_of_or_within
ISO IEA
MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229) GO_REF:0000107
RGD Ensembl
PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 PMID:20940229 More...
GO_REF:0000107
NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
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Wnt5a
Wnt family member 5A
acts_upstream_of_or_within
ISO IEA
MGI:1857617|MGI:2135272 (PMID:17433286) GO_REF:0000107
RGD Ensembl
PMID:17433286
GO_REF:0000107
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
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Zeb1
zinc finger E-box binding homeobox 1
acts_upstream_of_or_within
ISO
MGI:1861230 (PMID:21980308)
RGD
PMID:21980308
NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all