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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


show annotations for term's descendants           Sort by:
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain acts_upstream_of_or_within ISO MGI:1856327 (PMID:22910579) RGD PMID:22910579 NCBI chr 4:33,518,557...33,553,484
Ensembl chr 4:33,518,420...33,553,995 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153356 (PMID:19114551) 		Ensembl
RGD		 PMID:19114551 GO_REF:0000107 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,457...11,924,107 		JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:10366602) RGD PMID:10366602 NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:117,769,517...117,782,199 		JBrowse link
G Eln elastin involved_in IEA
ISO 		GO_REF:0000107
(PMID:20576933) 		Ensembl
RGD		 PMID:20576933 GO_REF:0000107 NCBI chr12:27,604,983...27,648,413
Ensembl chr12:27,604,680...27,648,413 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:28774593) 		Ensembl
RGD		 PMID:28774593 GO_REF:0000107 NCBI chr10:85,845,801...85,858,361
Ensembl chr10:85,844,703...85,858,355 		JBrowse link
G Gas6 growth arrest specific 6 involved_in IEP PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:82,747,345...82,778,088 		JBrowse link
G Gpm6b glycoprotein m6b involved_in ISO
IEA
ISS 		(PMID:21638316)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:21638316 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:31,689,485...31,836,199
Ensembl chr  X:31,690,359...31,733,272 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO MGI:4437572 (PMID:20181608) RGD PMID:20181608 NCBI chr 2:175,786,767...175,794,515
Ensembl chr 2:175,789,009...175,794,438 		JBrowse link
G Has1 hyaluronan synthase 1 involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:10455188)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:10455188 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:67,366,460...67,378,686
Ensembl chr 1:67,366,460...67,378,444 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:10455188)
GO_REF:0000107
GO_REF:0000033 		UniProt
RGD
Ensembl
GO_Central		 PMID:10455188 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:90,002,929...90,028,933
Ensembl chr 7:90,002,929...90,018,535 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in IBA
ISO 		GO_REF:0000033
(PMID:10455188) 		GO_Central
RGD		 PMID:10455188 GO_REF:0000033 NCBI chr19:51,668,276...51,691,042 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:4356107 (PMID:19706528) 		Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:126,518,587...126,614,581 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO
IEA 		(PMID:23867277)
GO_REF:0000107 		RGD
Ensembl		 PMID:23867277 GO_REF:0000107 NCBI chr13:70,500,060...70,537,711
Ensembl chr13:70,500,060...70,537,733 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856877 (PMID:22910579) 		Ensembl
RGD		 PMID:22910579 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:51,072,209...51,085,936 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:19734317)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:19734317 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:53,562,849...53,630,118
Ensembl chr 6:53,563,073...53,630,760 		JBrowse link
G Lamb2 laminin subunit beta 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:118,056,935...118,069,090 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:107,362,514...107,404,081
Ensembl chr13:107,322,526...107,404,081 		JBrowse link
G Megf9 multiple EGF-like-domains 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:89,008,679...89,120,731
Ensembl chr 5:89,008,679...89,120,731 		JBrowse link
G Ntn4 netrin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:30,073,637...30,187,407
Ensembl chr 7:30,073,333...30,188,309 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3620600|MGI:3620601|MGI:3620603 (PMID:16467571) 		Ensembl
RGD		 PMID:16467571 GO_REF:0000107 NCBI chr12:25,313,070...25,323,631
Ensembl chr12:25,313,072...25,323,631 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of 		ISO
IEA 		(PMID:25708780), (PMID:27697841), (PMID:32571911)
(PMID:22842973), (PMID:25708780), (PMID:32571911)
GO_REF:0000117
GO_REF:0000107
(PMID:32543734) 		RGD
UniProt
Ensembl		 PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 GO_REF:0000107 GO_REF:0000117 NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:52,308,364...52,385,942 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:18097473) 		UniProt
RGD		 PMID:18097473 GO_REF:0000024 NCBI chr10:86,689,148...86,690,956
Ensembl chr10:86,688,703...86,691,231 		JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:3588774 (PMID:16338116)
MGI:1856097 (PMID:20889), (PMID:3385878), (PMID:937819) 		RGD PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:75,159,782...75,267,093 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1860700 (PMID:24820199) RGD PMID:24820199 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:54,866,632...54,903,232 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:18973305), (PMID:27339457)
MGI:4410301 (PMID:19855011)
(PMID:16478991), (PMID:20019329), (PMID:26178373), (PMID:26711913), (PMID:28508064)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 More... GO_REF:0000107 GO_REF:0000117 NCBI chr 1:212,211,057...212,218,739
Ensembl chr 1:212,210,972...212,218,739 		JBrowse link
G Eln elastin TAS RGD PMID:10090127 RGD:731206 NCBI chr12:27,604,983...27,648,413
Ensembl chr12:27,604,680...27,648,413 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25056700) 		Ensembl
RGD		 PMID:25056700 GO_REF:0000107 NCBI chr 6:31,175,919...31,183,657
Ensembl chr 6:31,175,919...31,183,657 		JBrowse link
G Fbln5 fibulin 5 involved_in ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:11805834), (PMID:11805835)
GO_REF:0000107
GO_REF:0000033
(PMID:17035250) 		UniProt
RGD
Ensembl
GO_Central		 PMID:11805834 PMID:11805835 PMID:17035250 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:126,664,100...126,742,847
Ensembl chr 6:126,664,100...126,746,296 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within IMP
ISO
IEA 		MGI:3610732 (PMID:12417550), (PMID:16192629)
(PMID:23413430)
GO_REF:0000107 		RGD
Ensembl		 PMID:12417550 PMID:16192629 PMID:23413430 PMID:16432278 GO_REF:0000107, RGD:1600669 NCBI chr18:48,162,889...48,175,640
Ensembl chr18:48,165,688...48,239,810 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (PMID:25713297) RGD PMID:25713297 NCBI chr 1:91,727,769...91,759,822
Ensembl chr 1:91,727,769...91,760,006 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO
IEA
IBA 		(PMID:22355679)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22355679 GO_REF:0000033 GO_REF:0000107 NCBI chr10:46,666,552...46,669,613
Ensembl chr10:46,655,722...46,669,740 		JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO
IEA 		(PMID:16444274)
GO_REF:0000107 		RGD
Ensembl		 PMID:16444274 GO_REF:0000107 NCBI chr10:1,250,554...1,345,681
Ensembl chr10:1,263,194...1,345,678 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:19940141) 		Ensembl
RGD		 PMID:19940141 GO_REF:0000107 NCBI chr 8:69,280,397...69,880,144
Ensembl chr 8:69,284,646...69,917,342 		JBrowse link
G Tnxb tenascin XB involved_in ISO
IEA 		(PMID:15102077)
GO_REF:0000107 		RGD
Ensembl		 PMID:15102077 GO_REF:0000107 Ensembl chr20:4,031,082...4,090,128 JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:5754386 (PMID:25572963) RGD PMID:25572963 NCBI chr 4:121,148,102...121,335,549
Ensembl chr 4:121,148,103...121,336,892 		JBrowse link
G Mir145 microRNA 145 acts_upstream_of
involved_in 		ISO UniProtKB:P01137 (PMID:25323858)
(PMID:25704091) 		RGD PMID:25323858 PMID:25704091 NCBI chr18:57,369,983...57,370,070 JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:28131417) RGD PMID:28131417 NCBI chr15:98,587,984...98,588,079
Ensembl chr15:98,587,984...98,588,079 		JBrowse link
G Mir19a microRNA 19a acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:98,588,131...98,588,212
Ensembl chr15:98,588,131...98,588,212 		JBrowse link
G Mir19b1 microRNA 19b-1 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:98,588,433...98,588,519
Ensembl chr15:98,588,433...98,588,519 		JBrowse link
G Mir19b2 microRNA 19b-2 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr  X:137,343,058...137,343,153 JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:28095798) RGD PMID:28095798 NCBI chr17:1,819,147...1,819,243 JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of ISO (PMID:26315535) RGD PMID:26315535 NCBI chr 1:142,849,400...142,849,489 JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:28251559) RGD PMID:28251559 NCBI chr  X:24,460,648...24,460,755
Ensembl chr  X:24,460,648...24,460,755 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:25704091) RGD PMID:25704091 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:150,095,787...150,221,104 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO
IEA 		(PMID:30729664)
GO_REF:0000107 		RGD
Ensembl		 PMID:30729664 GO_REF:0000107 NCBI chr14:2,634,294...2,810,269
Ensembl chr14:2,634,188...2,810,271 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen acts_upstream_of ISO
IEA 		(PMID:30729664)
GO_REF:0000107 		RGD
Ensembl		 PMID:30729664 GO_REF:0000107 NCBI chr19:69,426,540...69,447,017
Ensembl chr19:69,421,638...69,446,944 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25056700) 		Ensembl
RGD		 PMID:25056700 GO_REF:0000107 NCBI chr 6:31,175,919...31,183,657
Ensembl chr 6:31,175,919...31,183,657 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 IMP RGD PMID:27488450 RGD:152995505 NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:163,846,687...163,859,851 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:30729664) RGD PMID:30729664 NCBI chr17:1,819,147...1,819,243 JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) RGD PMID:21307346 NCBI chr15:61,071,574...61,084,408
Ensembl chr15:61,071,574...61,084,408 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of 		ISO
IEA 		(PMID:21307346)
(PMID:30729664)
GO_REF:0000107 		RGD
Ensembl		 PMID:21307346 PMID:30729664 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:73,024,760...73,132,324 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:26747772) 		Ensembl
RGD		 PMID:26747772 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:69,518,988...69,549,684 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2176205|MGI:2385468 (PMID:20881014) 		Ensembl
RGD		 PMID:20881014 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of IEA
ISO 		GO_REF:0000107
(PMID:24279830) 		Ensembl
RGD		 PMID:24279830 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of ISO
IEA 		(PMID:28251559)
GO_REF:0000107 		RGD
Ensembl		 PMID:28251559 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:66,449,293...66,527,260 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO
IEA 		UniProtKB:P00797 (PMID:17416596)
GO_REF:0000107 		RGD
Ensembl		 PMID:17416596 GO_REF:0000107 NCBI chr19:69,426,540...69,447,017
Ensembl chr19:69,421,638...69,446,944 		JBrowse link
G Has2 hyaluronan synthase 2 IMP RGD PMID:27094859 RGD:12910548 NCBI chr 7:90,002,929...90,028,933
Ensembl chr 7:90,002,929...90,018,535 		JBrowse link
G Notch1 notch receptor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21311046) 		Ensembl
RGD		 PMID:21311046 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of IEA
ISO 		GO_REF:0000107
(PMID:31319059) 		Ensembl
RGD		 PMID:31319059 GO_REF:0000107 NCBI chr 5:137,285,408...137,305,047
Ensembl chr 5:137,285,408...137,304,981 		JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934258 (PMID:17881493) 		Ensembl
RGD		 PMID:17881493 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:83,952,986...83,959,203 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      cellular component organization or biogenesis 7050
        cellular component organization 6802
          cellular component assembly 3377
            extracellular matrix assembly 55
              basement membrane assembly + 8
              biofilm matrix assembly 0
              elastic fiber assembly 12
              negative regulation of extracellular matrix assembly + 11
              positive regulation of extracellular matrix assembly + 10
              regulation of extracellular matrix assembly + 23
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      cellular component organization or biogenesis 7050
        cellular component organization 6802
          extracellular structure organization 325
            extracellular matrix organization 324
              extracellular matrix assembly 55
                basement membrane assembly + 8
                biofilm matrix assembly 0
                elastic fiber assembly 12
                negative regulation of extracellular matrix assembly + 11
                positive regulation of extracellular matrix assembly + 10
                regulation of extracellular matrix assembly + 23
                vitelline membrane formation + 1
paths to the root