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ONTOLOGY REPORT - ANNOTATIONS

Term:neurotransmitter-gated ion channel clustering
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Accession:GO:0072578 term browser browse the term
Definition:The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane.


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neurotransmitter-gated ion channel clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO (PMID:23911104) RGD PMID:23911104 NCBI chr 4:112,545,874...113,338,713
Ensembl chr 4:112,545,917...113,335,865 		JBrowse link
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2679447 (PMID:29107521)		 Ensembl
RGD		 PMID:29107521 GO_REF:0000107 NCBI chr10:54,544,461...54,557,854
Ensembl chr10:54,544,588...54,558,434 		JBrowse link
G Slitrk3 SLIT and NTRK-like family, member 3 acts_upstream_of_or_within ISO MGI:2681835|MGI:6119690 (PMID:29107521) RGD PMID:29107521 NCBI chr 2:157,680,067...157,697,404
Ensembl chr 2:157,687,535...157,696,709 		JBrowse link
AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect
involved_in		 ISO
IEA		 (PMID:24328732)
GO_REF:0000107		 RGD
Ensembl		 PMID:24328732 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Chrdl1 chordin-like 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:6315865 (PMID:30344043)		 Ensembl
RGD		 PMID:30344043 GO_REF:0000107 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IMP
IBA		 PMID:21525273
GO_REF:0000033		 GO_Central PMID:21525273 GO_REF:0000033, RGD:8554095 NCBI chr10:54,740,700...54,769,097
Ensembl chr10:54,739,470...54,767,153 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO MGI:5521326 (PMID:23911104) RGD PMID:23911104 NCBI chr 4:112,545,874...113,338,713
Ensembl chr 4:112,545,917...113,335,865 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISS
ISO
IEA
IMP		 GO_REF:0000024
(PMID:12796785), (PMID:21940442)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:12796785 PMID:21940442 PMID:21940442 GO_REF:0000024 GO_REF:0000107, RGD:8553843 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21558424), (PMID:21795692)
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:21558424 PMID:21795692 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
gamma-aminobutyric acid receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glrb glycine receptor, beta acts_upstream_of_or_within ISO MGI:95749 (PMID:19723286) RGD PMID:19723286 NCBI chr 2:166,134,616...166,207,498
Ensembl chr 2:166,134,626...166,207,489 		JBrowse link
G Gphn gephyrin involved_in
acts_upstream_of_or_within		 ISO
IBA
ISS		 (PMID:25025157), (PMID:26613940)
MGI:95749|MGI:95751 (PMID:19723286)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:19723286 PMID:25025157 PMID:26613940 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:96,954,365...97,483,617
Ensembl chr 6:96,892,148...97,483,612 		JBrowse link
G Lhfpl4 LHFPL tetraspan subfamily member 4 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:28279354), (PMID:28978485)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:28279354 PMID:28978485 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:146,317,110...146,340,073
Ensembl chr 4:146,313,541...146,340,463 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15620359)		 BHF-UCL
RGD		 PMID:15620359 GO_REF:0000024 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Shisa7 shisa family member 7 involved_in ISO
IBA		 (PMID:31601770)
GO_REF:0000033		 RGD
GO_Central		 PMID:31601770 GO_REF:0000033 NCBI chr 1:68,993,900...69,012,943
Ensembl chr 1:68,994,025...69,012,943 		JBrowse link
glycine receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2182559 (PMID:9812897)
GO_REF:0000033		 RGD
GO_Central		 PMID:9812897 GO_REF:0000033 NCBI chr 6:96,954,365...97,483,617
Ensembl chr 6:96,892,148...97,483,612 		JBrowse link
NMDA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 GO_REF:0000107
(PMID:24328732)		 Ensembl
RGD		 PMID:24328732 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A IDA RGD PMID:18442977 RGD:7241017 NCBI chr 2:36,693,462...36,698,026
Ensembl chr 2:36,694,174...36,695,442 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IDA PMID:19450252 BHF-UCL PMID:19450252 RGD:8553605 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15620359)		 BHF-UCL
RGD		 PMID:15620359 GO_REF:0000024 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Reln reelin involved_in IEA
ISO		 GO_REF:0000107
(PMID:21664258)		 Ensembl
RGD		 PMID:21664258 GO_REF:0000107 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21558424)
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:21558424 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IMP PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr10:54,740,700...54,769,097
Ensembl chr10:54,739,470...54,767,153 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in IMP PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chr 4:124,271,456...124,356,538
Ensembl chr 4:124,271,456...124,321,268 		JBrowse link
G Snx27 sorting nexin 27 IMP RGD PMID:25071192 RGD:13508620 NCBI chr 2:182,135,904...182,218,906
Ensembl chr 2:182,135,905...182,218,906 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 IMP RGD PMID:20442266 RGD:11535133 NCBI chr12:42,621,127...42,683,262
Ensembl chr12:42,621,135...42,683,274 		JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 involved_in IMP PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr16:51,808,465...51,878,060
Ensembl chr16:51,808,468...51,878,060 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric-chelate reductase 1-like acts_upstream_of_or_within ISO (PMID:29276473) RGD PMID:29276473 NCBI chr 5:71,655,911...71,690,132
Ensembl chr 5:71,659,284...71,690,108 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5056336 (PMID:21558424)		 Ensembl
RGD		 PMID:21558424 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Shisa6 shisa family member 6 involved_in ISO (PMID:26931375) RGD PMID:26931375 NCBI chr10:50,897,740...51,192,111
Ensembl chr10:50,903,333...51,192,063 		JBrowse link
G Shisa7 shisa family member 7 NOT|involved_in ISO (PMID:31601770)
(PMID:29199957)		 RGD PMID:29199957 PMID:31601770 NCBI chr 1:68,993,900...69,012,943
Ensembl chr 1:68,994,025...69,012,943 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:3608695 (PMID:25429150) RGD PMID:25429150 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      cellular localization 3677
        localization within membrane 763
          protein localization to membrane 668
            receptor clustering 82
              neurotransmitter-gated ion channel clustering 22
                NMDA glutamate receptor clustering 6
                gamma-aminobutyric acid receptor clustering 5
                glutamate receptor clustering + 14
                glycine receptor clustering 1
Path 2
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      macromolecule localization 3183
        cellular macromolecule localization 2715
          protein localization 2703
            protein localization to membrane 668
              receptor clustering 82
                neurotransmitter-gated ion channel clustering 22
                  NMDA glutamate receptor clustering 6
                  gamma-aminobutyric acid receptor clustering 5
                  glutamate receptor clustering + 14
                  glycine receptor clustering 1
paths to the root