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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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pyrimidine-containing compound catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (PMID:23560077) RGD PMID:23560077 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA involved_in ISO
IEA		 (PMID:22925580)
GO_REF:0000107		 RGD
Ensembl		 PMID:22925580 GO_REF:0000107 NCBI chr 4:86,161,642...86,204,656
Ensembl chr 4:86,161,643...86,204,628 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO
IEA		 (PMID:5472365)
GO_REF:0000107		 RGD
Ensembl		 PMID:5472365 GO_REF:0000107 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA		 (PMID:14715930)
GO_REF:0000107		 RGD
Ensembl		 PMID:14715930 GO_REF:0000107 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IEA		 (PMID:14715930)
GO_REF:0000107		 RGD
Ensembl		 PMID:14715930 GO_REF:0000107 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO
IEA		 (PMID:11278936)
GO_REF:0000107		 RGD
Ensembl		 PMID:11278936 GO_REF:0000107 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:12692563) RGD PMID:12692563 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Cda cytidine deaminase involved_in IDA
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
(PMID:9596658)		 Ensembl
InterPro
GO_Central
RGD		 PMID:9596658 PMID:675715 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:2316616 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO
IBA		 (PMID:26945630)
GO_REF:0000033		 RGD
GO_Central		 PMID:26945630 GO_REF:0000033 NCBI chr15:33,726,590...33,755,611
Ensembl chr15:33,723,435...33,755,576 		JBrowse link
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO
IEA		 (PMID:5472365)
GO_REF:0000107		 RGD
Ensembl		 PMID:5472365 GO_REF:0000107 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA		 (PMID:7744869)
GO_REF:0000107		 RGD
Ensembl		 PMID:7744869 GO_REF:0000107 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IEA		 (PMID:12849978)
GO_REF:0000107		 RGD
Ensembl		 PMID:12849978 GO_REF:0000107 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO
IBA
ISS		 (PMID:24467396)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24467396 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
G ENSRNOG00000064603 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr16:1,393,358...1,394,501 JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO MGI:2183547 (PMID:12077348) RGD PMID:12077348 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 ISO MGI:3699164 (PMID:12077348)
MGI:3699164 (PMID:15772079)		 RGD PMID:12077348 PMID:15772079 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO
IEA		 (PMID:12234672)
GO_REF:0000107		 RGD
Ensembl		 PMID:12234672 GO_REF:0000107 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO
IEA		 (PMID:5472365)
GO_REF:0000107		 RGD
Ensembl		 PMID:5472365 GO_REF:0000107 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA		 (PMID:14154460)
GO_REF:0000107		 RGD
Ensembl		 PMID:14154460 GO_REF:0000107 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000104
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000002 GO_REF:0000033, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000104
GO_REF:0000002		 GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 Ensembl chr13:67,763,505...67,765,634 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO
IEA
IBA		 (PMID:10681516)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:10681516 GO_REF:0000033 GO_REF:0000107 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:73,509,933...73,556,192
Ensembl chr14:73,509,933...73,556,177 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO		 GO_REF:0000107
(PMID:12651209)
(PMID:11988088)		 Ensembl
RGD		 PMID:11988088 PMID:12651209 PMID:1629785 GO_REF:0000107, RGD:1599794 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO
IEA
IBA		 (PMID:9718352)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:9718352 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:41,005,551...41,111,724
Ensembl chr15:41,005,551...41,111,829 		JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:35,374,427...35,480,228
Ensembl chr18:35,377,181...35,480,157 		JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:193,883,039...193,898,916
Ensembl chr 1:193,883,106...193,898,914 		JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:25,575,104...25,659,422
Ensembl chr 6:25,575,104...25,659,422 		JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:22525402)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:22525402 GO_REF:0000024 GO_REF:0000107 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
thymidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:1512248)		 Ensembl
UniProt
RGD		 PMID:1512248 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 involved_in IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:23835272)		 GO_Central
Ensembl
RGD		 PMID:23835272 PMID:2768248 GO_REF:0000033 GO_REF:0000107, RGD:1599052 NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IBA
IEA		 (PMID:10410956)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:10410956 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 (PMID:10858452), (PMID:9556635)
GO_REF:0000033		 RGD
GO_Central		 PMID:9556635 PMID:10858452 GO_REF:0000033 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10369669), (PMID:21074248)		 UniProt
Ensembl
RGD		 PMID:10369669 PMID:21074248 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO
IEA		 (PMID:5472365)
GO_REF:0000107		 RGD
Ensembl		 PMID:5472365 GO_REF:0000107 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA		 (PMID:14715930), (PMID:7744869)
GO_REF:0000107		 RGD
Ensembl		 PMID:7744869 PMID:14715930 GO_REF:0000107 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IEA		 (PMID:14715930)
GO_REF:0000107		 RGD
Ensembl		 PMID:14715930 GO_REF:0000107 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IBA
ISS
IEA		 (PMID:1512248), (PMID:18075467)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:1512248 PMID:18075467 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO
IEA
IDA		 (PMID:10410956), (PMID:18075467)
GO_REF:0000107
PMID:8307005		 RGD
Ensembl		 PMID:10410956 PMID:18075467 PMID:8307005 GO_REF:0000107, RGD:1624990 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
uridine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 involved_in ISO
IEA
IBA		 (PMID:7488099)
GO_REF:0000107
(PMID:23355744), (PMID:7744869)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:7488099 PMID:7744869 PMID:23355744 GO_REF:0000033 GO_REF:0000107 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IEA
IBA		 (PMID:12849978), (PMID:21855639)
GO_REF:0000107
(PMID:14715930)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:12849978 PMID:14715930 PMID:21855639 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO
IEA		 (PMID:11278936)
GO_REF:0000107		 RGD
Ensembl		 PMID:11278936 GO_REF:0000107 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        pyrimidine-containing compound metabolic process 74
          pyrimidine-containing compound catabolic process 28
            pyrimidine nucleobase catabolic process + 8
            pyrimidine nucleoside catabolic process + 8
            pyrimidine nucleotide catabolic process + 17
            thiamine-containing compound catabolic process + 0
paths to the root