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ONTOLOGY REPORT - ANNOTATIONS

Term:nephron epithelium development
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Accession:GO:0072009 term browser browse the term
Definition:The process whose specific outcome is the progression of the nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The nephron epithelium is a tissue that covers the surface of a nephron.

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branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:11,590,687...11,684,410
Ensembl chrNW_004936504:11,590,637...11,685,194 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:1,830,252...1,925,622
Ensembl chrNW_004936634:1,830,593...1,958,640 		JBrowse link
G Afg2a AFG2 AAA ATPase homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,957,364...2,207,410
Ensembl chrNW_004936662:1,886,176...1,929,097
Ensembl chrNW_004936662:1,886,176...1,929,097 		JBrowse link
G Agt angiotensinogen NOT|acts_upstream_of_or_within ISO (PMID:8675666)
(PMID:12657564) 		MGI PMID:8675666 PMID:12657564 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Cd44 CD44 molecule (IN blood group) acts_upstream_of_or_within ISO (PMID:10926769) MGI PMID:10926769 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in
NOT|involved_in 		ISO PMID:15843474
(PMID:17615577) 		UniProt PMID:15843474 PMID:17615577 RGD:8554075 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 NOT|involved_in ISO (PMID:17615577) UniProt PMID:17615577 NCBI chrNW_004936560:6,353,901...6,356,749
Ensembl chrNW_004936560:6,354,338...6,356,735 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:677,416...697,013
Ensembl chrNW_004936842:677,416...697,003 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936833:551,989...843,064
Ensembl chrNW_004936833:551,799...844,121 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16937369) MGI PMID:16937369 NCBI chrNW_004936905:458,062...463,359
Ensembl chrNW_004936905:458,298...463,346 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:3,537,917...3,704,012
Ensembl chrNW_004936662:3,537,925...3,690,877 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,004,847...4,010,626
Ensembl chrNW_004936600:4,004,824...4,010,689 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:8657307) UniProt
Ensembl		 PMID:8657307 GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936691:1,060,013...1,459,736
Ensembl chrNW_004936691:1,059,994...1,459,740 		JBrowse link
G Greb1l GREB1 like retinoic acid receptor coactivator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:1,110,679...1,240,463
Ensembl chrNW_004936550:1,122,260...1,238,682 		JBrowse link
G Gzf1 GDNF inducible zinc finger protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:2,208,185...2,223,651
Ensembl chrNW_004936620:2,208,224...2,218,539 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,809,288...3,813,014
Ensembl chrNW_004936478:3,809,288...3,813,014 		JBrowse link
G Hs3st3b1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936724:946,329...987,798
Ensembl chrNW_004936724:946,218...987,806 		JBrowse link
G Ilk integrin linked kinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:661,961...667,993
Ensembl chrNW_004936842:661,996...667,993 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:9,928,234...9,973,425
Ensembl chrNW_004936514:9,928,316...9,973,349 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G LOC101965661 beta-catenin-interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:3,696,686...3,729,017
Ensembl chrNW_004936623:3,782,005...3,806,619
Ensembl chrNW_004936623:3,782,005...3,806,619 		JBrowse link
G LOC101971277 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936724:236,957...329,877
Ensembl chrNW_004936724:236,957...329,856 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936814:1,096,604...1,165,755
Ensembl chrNW_004936814:1,095,974...1,165,866 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:16672320) Ensembl
MGI		 PMID:16672320 GO_REF:0000107 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:20,200,236...20,440,623
Ensembl chrNW_004936481:20,203,405...20,440,629 		JBrowse link
G Pgf placental growth factor acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chrNW_004936488:4,098,187...4,111,108
Ensembl chrNW_004936488:4,098,225...4,111,142 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004936905:76,781...128,995 JBrowse link
G Pspn persephin acts_upstream_of_or_within ISO (PMID:9491986) MGI PMID:9491986 NCBI chrNW_004936588:3,734,821...3,735,766
Ensembl chrNW_004936588:3,735,027...3,735,587 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:4,241,993...4,301,919
Ensembl chrNW_004936626:4,241,908...4,309,476 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of 		ISO (PMID:12482961)
(PMID:24550112) 		UniProt
MGI		 PMID:12482961 PMID:24550112 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:1,733,903...1,736,895
Ensembl chrNW_004936560:1,733,903...1,736,890 		JBrowse link
G Timeless timeless circadian regulator acts_upstream_of_or_within ISO PMID:10963667 MGI
RGD		 PMID:10963667 RGD:2308864 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tmem59l transmembrane protein 59 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,679,689...2,685,323
Ensembl chrNW_004936596:2,679,227...2,685,492 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,290,061...1,302,672
Ensembl chrNW_004936569:1,290,052...1,302,691 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
G Wt1 WT1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693 		JBrowse link
distal tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag1 jagged canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:8,857,688...8,894,270
Ensembl chrNW_004936485:8,857,669...8,895,315 		JBrowse link
G Notch1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:9,855,992...9,884,788
Ensembl chrNW_004936476:9,857,773...9,884,784 		JBrowse link
distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:4,592,654...4,696,348
Ensembl chrNW_004936597:4,592,621...4,696,377 		JBrowse link
G Wnk4 WNK lysine deficient protein kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,492,718...17,508,571
Ensembl chrNW_004936490:17,492,753...17,509,582 		JBrowse link
glomerular endothelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd34 CD34 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,030,788...5,051,864
Ensembl chrNW_004936557:5,030,441...5,051,868 		JBrowse link
G Edn1 endothelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:885,489...892,292
Ensembl chrNW_004936534:885,287...891,772 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:1,950,117...2,005,786
Ensembl chrNW_004936535:1,949,941...2,005,910 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:4,873,459...4,919,787
Ensembl chrNW_004936541:4,873,182...4,937,500 		JBrowse link
glomerular parietal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxj1 forkhead box J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,284,799...1,288,898
Ensembl chrNW_004936594:1,284,781...1,289,361 		JBrowse link
glomerular parietal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101968601 signal transducer CD24 involved_in ISO (PMID:19092120) UniProt PMID:19092120 NCBI chrNW_004936491:16,706,745...16,707,010 JBrowse link
G Prom1 prominin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:11,878,261...12,017,228
Ensembl chrNW_004936477:11,878,012...12,018,177 		JBrowse link
loop of Henle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:8,857,688...8,894,270
Ensembl chrNW_004936485:8,857,669...8,895,315 		JBrowse link
G Umod uromodulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:5,833,391...5,846,021
Ensembl chrNW_004936501:5,833,391...5,846,164 		JBrowse link
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:10322633) UniProt PMID:10322633 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of 		IEA
ISO 		(PMID:24550112) Ensembl
MGI		 PMID:24550112 GO_REF:0000107 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Six2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
mesonephric duct morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpc3 glypican 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936691:1,060,013...1,459,736
Ensembl chrNW_004936691:1,059,994...1,459,740 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17300925) UniProt PMID:17300925 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
metanephric ascending thin limb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160
Ensembl chrNW_004936694:1,930,621...1,957,179 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004936905:76,781...128,995 JBrowse link
G Umod uromodulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:5,833,391...5,846,021
Ensembl chrNW_004936501:5,833,391...5,846,164 		JBrowse link
metanephric connecting tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,858,344...3,881,985
Ensembl chrNW_004936544:3,858,344...3,882,106 		JBrowse link
metanephric descending thin limb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:7,146,997...7,160,369
Ensembl chrNW_004936478:7,147,027...7,160,401 		JBrowse link
metanephric distal convoluted tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,858,344...3,881,985
Ensembl chrNW_004936544:3,858,344...3,882,106 		JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Umod uromodulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:5,833,391...5,846,021
Ensembl chrNW_004936501:5,833,391...5,846,164 		JBrowse link
metanephric distal tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004936905:76,781...128,995 JBrowse link
metanephric distal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160
Ensembl chrNW_004936694:1,930,621...1,957,179 		JBrowse link
metanephric glomerular endothelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfb platelet derived growth factor subunit B involved_in ISO (PMID:9693135) UniProt PMID:9693135 NCBI chrNW_004936492:2,353,840...2,368,573
Ensembl chrNW_004936492:2,353,841...2,368,573 		JBrowse link
metanephric loop of Henle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (PMID:19060336) MGI PMID:19060336 NCBI chrNW_004936629:3,869,976...3,907,932
Ensembl chrNW_004936629:3,869,523...3,909,808 		JBrowse link
metanephric nephron tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
metanephric nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,045,496...1,047,865
Ensembl chrNW_004936737:1,046,613...1,047,950 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074
Ensembl chrNW_004936540:5,752,197...5,845,159 		JBrowse link
metanephric podocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:826,178...841,304
Ensembl chrNW_004936529:826,142...841,337 		JBrowse link
G Nphs2 NPHS2 stomatin family member, podocin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:9,496,083...9,516,086
Ensembl chrNW_004936481:9,496,127...9,515,534 		JBrowse link
metanephric proximal convoluted tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO RGD PMID:7733320 RGD:2326090 NCBI chrNW_004936551:594,647...626,016
Ensembl chrNW_004936551:591,695...626,056 		JBrowse link
metanephric proximal convoluted tubule segment 2 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:7,146,997...7,160,369
Ensembl chrNW_004936478:7,147,027...7,160,401 		JBrowse link
metanephric proximal straight tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:7,146,997...7,160,369
Ensembl chrNW_004936478:7,147,027...7,160,401 		JBrowse link
metanephric proximal tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anpep alanyl aminopeptidase, membrane ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936483:15,563,540...15,582,521
Ensembl chrNW_004936483:15,563,528...15,589,601 		JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936478:7,146,997...7,160,369
Ensembl chrNW_004936478:7,147,027...7,160,401 		JBrowse link
G Lrp2 LDL receptor related protein 2 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936469:10,245,001...10,438,933
Ensembl chrNW_004936469:10,244,881...10,438,935 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160
Ensembl chrNW_004936694:1,930,621...1,957,179 		JBrowse link
G Slc15a1 solute carrier family 15 member 1 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936472:11,669,206...11,716,303
Ensembl chrNW_004936472:11,669,206...11,716,303 		JBrowse link
G Slc15a2 solute carrier family 15 member 2 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936536:8,280,537...8,316,011
Ensembl chrNW_004936536:8,280,448...8,316,064 		JBrowse link
G Slc22a1 solute carrier family 22 member 1 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936489:11,534,095...11,556,759
Ensembl chrNW_004936489:11,534,095...11,556,745 		JBrowse link
G Slc22a6 solute carrier family 22 member 6 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936581:348,719...356,246
Ensembl chrNW_004936581:349,057...356,059 		JBrowse link
G Slc2a5 solute carrier family 2 member 5 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936623:3,226,533...3,249,909
Ensembl chrNW_004936623:3,226,515...3,249,914 		JBrowse link
G Slc4a4 solute carrier family 4 member 4 ISO RGD PMID:30645697 RGD:155631307 NCBI chrNW_004936598:3,391,587...3,713,629
Ensembl chrNW_004936598:3,391,575...3,713,635 		JBrowse link
metanephric renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
metanephric thick ascending limb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umod uromodulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:5,833,391...5,846,021
Ensembl chrNW_004936501:5,833,391...5,846,164 		JBrowse link
negative regulation of apoptotic process involved in metanephric nephron tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21281623) MGI
Ensembl		 PMID:21281623 GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:3,206,826...3,208,675
Ensembl chrNW_004936522:3,206,957...3,207,919 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:24550112) MGI PMID:24550112 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
negative regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
nephron tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt6 Wnt family member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,290,061...1,302,672
Ensembl chrNW_004936569:1,290,052...1,302,691 		JBrowse link
nephron tubule epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:20181743) UniProt PMID:20181743 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 involved_in ISO (PMID:20181743) UniProt PMID:20181743 NCBI chrNW_004936470:22,963,498...23,117,923
Ensembl chrNW_004936470:22,963,496...23,117,226 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,290,061...1,302,672
Ensembl chrNW_004936569:1,290,052...1,302,691 		JBrowse link
nephron tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
podocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd2 adenosine monophosphate deaminase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:1,092,180...1,111,722
Ensembl chrNW_004936704:1,099,816...1,113,887 		JBrowse link
G Asxl1 ASXL transcriptional regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:19,218,494...19,297,188
Ensembl chrNW_004936485:19,227,400...19,298,912 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:8,857,688...8,894,270
Ensembl chrNW_004936485:8,857,669...8,895,315 		JBrowse link
G LOC101965998 notch receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:454,273...539,544
Ensembl chrNW_004936872:390,852...536,321 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 involved_in ISO PMID:15994232 UniProt PMID:15994232 RGD:8553727 NCBI chrNW_004936479:21,373,917...22,062,498
Ensembl chrNW_004936479:21,373,746...21,920,214 		JBrowse link
G Myo1e myosin IE involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:20,244,424...20,435,604
Ensembl chrNW_004936471:20,244,397...20,435,648 		JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:495,421...514,179
Ensembl chrNW_004936570:494,971...513,874 		JBrowse link
G Podxl podocalyxin like involved_in ISO PMID:15994232 UniProt PMID:15994232 RGD:8553727 NCBI chrNW_004936579:3,960,338...3,970,925 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:18618131) UniProt PMID:18618131 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693 		JBrowse link
podocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Basp1 brain abundant membrane attached signal protein 1 involved_in ISO (PMID:19050011) UniProt PMID:19050011 NCBI chrNW_004936480:19,695,949...19,812,681 JBrowse link
G Cd2ap CD2 associated protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:12,890,595...12,989,046
Ensembl chrNW_004936476:12,890,468...12,987,843 		JBrowse link
G Edn1 endothelin 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:24722437) Ensembl
MGI		 PMID:24722437 GO_REF:0000107 NCBI chrNW_004936534:885,489...892,292
Ensembl chrNW_004936534:885,287...891,772 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:1,950,117...2,005,786
Ensembl chrNW_004936535:1,949,941...2,005,910 		JBrowse link
G Ednrb endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Klf15 KLF transcription factor 15 involved_in ISO (PMID:22493483) UniProt PMID:22493483 NCBI chrNW_004936898:519,572...529,319 JBrowse link
G LOC101968601 signal transducer CD24 involved_in ISO (PMID:19092120) UniProt PMID:19092120 NCBI chrNW_004936491:16,706,745...16,707,010 JBrowse link
G Prom1 prominin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:11,878,261...12,017,228
Ensembl chrNW_004936477:11,878,012...12,018,177 		JBrowse link
G Ptpro protein tyrosine phosphatase receptor type O involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936587:1,967,079...2,188,651
Ensembl chrNW_004936587:1,964,665...2,188,672 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:19050011) UniProt PMID:19050011 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
G Agtr2 angiotensin II receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:21281623)
(PMID:17522159) 		Ensembl
MGI		 PMID:17522159 PMID:21281623 GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Hoxb7 homeobox B7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,777,005...12,780,515
Ensembl chrNW_004936490:12,777,020...12,780,522 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074
Ensembl chrNW_004936540:5,752,197...5,845,159 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G Maged1 MAGE family member D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936909:493,998...592,649
Ensembl chrNW_004936909:585,206...592,644 		JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:17314325), (PMID:17881463) UniProt PMID:17314325 PMID:17881463 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:24550112) MGI PMID:24550112 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:21281623) Ensembl
MGI		 PMID:21281623 GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,245,134...16,261,180
Ensembl chrNW_004936476:16,247,100...16,260,673 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936690:1,077,538...1,094,005
Ensembl chrNW_004936690:1,079,227...1,097,041 		JBrowse link
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Lif LIF interleukin 6 family cytokine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:410,043...413,256
Ensembl chrNW_004936904:410,043...413,257 		JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:12435636) UniProt PMID:12435636 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
positive regulation of metanephric DCT cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
positive regulation of metanephric podocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,168,599...3,179,369
Ensembl chrNW_004936578:3,168,331...3,171,928 		JBrowse link
positive regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G LOC101968601 signal transducer CD24 involved_in ISO (PMID:16885410) UniProt PMID:16885410 NCBI chrNW_004936491:16,706,745...16,707,010 JBrowse link
G Prom1 prominin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:11,878,261...12,017,228
Ensembl chrNW_004936477:11,878,012...12,018,177 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper tumor suppressor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,678,788...4,688,825
Ensembl chrNW_004936600:4,678,788...4,686,575 		JBrowse link
pronephric nephron tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
proximal tubule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc2 ATP binding cassette subfamily C member 2 acts_upstream_of_or_within ISO (PMID:24641901), (PMID:25145654) MGI PMID:24641901 PMID:25145654 NCBI chrNW_004936636:292,631...341,999
Ensembl chrNW_004936636:292,709...340,393 		JBrowse link
G Aqp11 aquaporin 11 involved_in
acts_upstream_of_or_within 		ISO (PMID:27582095)
(PMID:18701606) 		UniProt
MGI		 PMID:18701606 PMID:27582095 NCBI chrNW_004936498:6,213,583...6,237,273 JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427 		JBrowse link
G Heyl hes related family bHLH transcription factor with YRPW motif like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:21,503,763...21,513,392
Ensembl chrNW_004936474:21,505,149...21,510,624 		JBrowse link
G LOC101965998 notch receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:454,273...539,544
Ensembl chrNW_004936872:390,852...536,321 		JBrowse link
proximal tubule morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd5 COMM domain containing 5 involved_in ISO PMID:24515317 UniProt PMID:24515317 RGD:10047245 NCBI chrNW_004936470:7,591,783...7,593,904
Ensembl chrNW_004936470:7,591,783...7,594,509 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO RGD PMID:35695380 RGD:155630629 NCBI chrNW_004936677:342,964...360,890
Ensembl chrNW_004936677:343,042...360,879 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732 		JBrowse link
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt9b Wnt family member 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
regulation of metanephric nephron tubule epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:3,537,917...3,704,012
Ensembl chrNW_004936662:3,537,925...3,690,877 		JBrowse link
G Lif LIF interleukin 6 family cytokine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936904:410,043...413,256
Ensembl chrNW_004936904:410,043...413,257 		JBrowse link
G Pax2 paired box 2 involved_in ISO (PMID:17314325) UniProt PMID:17314325 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936758:101,629...225,496
Ensembl chrNW_004936758:101,620...225,525 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567 		JBrowse link
regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
renal vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004936871:666,961...670,910
Ensembl chrNW_004936871:666,938...670,916 		JBrowse link
renal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
renal vesicle induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox8 SRY-box transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
renal vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
renal vesicle progenitor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,045,496...1,047,865
Ensembl chrNW_004936737:1,046,613...1,047,950 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:3,130,197...3,135,273
Ensembl chrNW_004936634:3,130,167...3,135,537 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936634:3,830,617...3,834,494
Ensembl chrNW_004936634:3,829,663...3,834,806 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:6,810,678...6,813,186
Ensembl chrNW_004936475:6,810,666...6,813,192 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,291,391...4,310,752
Ensembl chrNW_004936518:4,288,154...4,310,753 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936732:1,773,043...1,947,081
Ensembl chrNW_004936732:1,773,028...1,946,696 		JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within ISO (PMID:7517224) MGI PMID:7517224 NCBI chrNW_004936673:1,424,513...1,838,277
Ensembl chrNW_004936673:1,432,927...1,719,966 		JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:5,250,154...5,434,699
Ensembl chrNW_004936526:5,255,227...5,434,697 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:11688560), (PMID:16839447)
(PMID:16839447) 		UniProt
MGI		 PMID:11688560 PMID:16839447 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004936871:666,961...670,910
Ensembl chrNW_004936871:666,938...670,916 		JBrowse link
G Tacstd2 tumor associated calcium signal transducer 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:3,206,826...3,208,675
Ensembl chrNW_004936522:3,206,957...3,207,919 		JBrowse link
G Wnt11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,909,041...4,927,482
Ensembl chrNW_004936498:4,908,978...4,927,165 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    developmental process 6463
      anatomical structure development 6075
        nephron development 180
          nephron epithelium development 135
            early distal convoluted tubule development + 0
            glomerular epithelium development + 27
            late distal convoluted tubule development + 0
            long descending thin limb development + 0
            macula densa development + 0
            mesonephric nephron epithelium development + 0
            metanephric nephron epithelium development + 31
            nephron epithelium morphogenesis + 86
            nephron tubule development + 113
            renal vesicle development + 19
            short descending thin limb development + 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    developmental process 6463
      anatomical structure development 6075
        multicellular organism development 4909
          system development 4277
            renal system development 398
              kidney development 384
                kidney epithelium development 169
                  nephron epithelium development 135
                    early distal convoluted tubule development + 0
                    glomerular epithelium development + 27
                    late distal convoluted tubule development + 0
                    long descending thin limb development + 0
                    macula densa development + 0
                    mesonephric nephron epithelium development + 0
                    metanephric nephron epithelium development + 31
                    nephron epithelium morphogenesis + 86
                    nephron tubule development + 113
                    renal vesicle development + 19
                    short descending thin limb development + 0
paths to the root