Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:DNA biosynthetic process
go back to main search page
Accession:GO:0071897 term browser browse the term
Definition:The biosynthetic process resulting in the formation of DNA.
Synonyms:exact_synonym: DNA anabolism;   DNA biosynthesis;   DNA formation;   DNA synthesis


show annotations for term's descendants           Sort by:
DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037878.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AC112350.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 3:109,190,742...109,191,879 JBrowse link
G Ccn2 cellular communication network factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:249,805,802...249,837,685
Ensembl chr 1:239,856,391...239,888,282 		JBrowse link
G ENSRNOG00000063353 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 4:54,767,356...54,768,047 JBrowse link
G ENSRNOG00000066374 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 6:113,779,970...113,780,861 JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483 		JBrowse link
G Lig1 DNA ligase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:83,243,043...83,281,707
Ensembl chr 1:74,165,842...74,204,413 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:68,215,371...68,238,705
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Lig4 DNA ligase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO
IEA		 MGI:3610732 (PMID:19458888)
GO_REF:0000107		 RGD
Ensembl		 PMID:19458888 GO_REF:0000107 NCBI chr18:48,162,889...48,175,640
Ensembl chr18:45,967,343...46,041,477 		JBrowse link
G Pam16 presequence translocase associated motor 16 acts_upstream_of_or_within ISO (PMID:20719856) RGD PMID:20719856 NCBI chr10:11,449,316...11,457,071
Ensembl chr10:10,943,001...10,950,649 		JBrowse link
G Phb1 prohibitin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18480465)
GO_REF:0000107
GO_REF:0000043		 RGD
Ensembl
UniProt		 PMID:18480465 GO_REF:0000043 GO_REF:0000107 NCBI chr10:81,102,043...81,114,815
Ensembl chr10:80,605,251...80,618,042 		JBrowse link
G Phb1l1 prohibitin 1 like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:32,930,746...32,931,910
Ensembl chr  X:32,930,967...32,931,856 		JBrowse link
G Phb1l2 prohibitin 1 like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:8,695,127...8,696,208
Ensembl chr19:8,695,215...8,696,228 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in IMP
IEA		 GO_REF:0000108 GOC
RGD		 PMID:9099618 GO_REF:0000108, RGD:7247275 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:212,656,500...212,680,667
Ensembl chr 1:203,203,388...203,251,348 		JBrowse link
G Polb DNA polymerase beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:76,081,903...76,105,174
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IMP
IEA
ISO		 GO_REF:0000117
GO_REF:0000107
(PMID:11595739)		 UniProt
Ensembl
RGD		 PMID:11595739 PMID:11959615 GO_REF:0000107 GO_REF:0000117, RGD:7247274 NCBI chr 1:104,161,984...104,178,074
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO
IEA		 (PMID:11595739)
GO_REF:0000107		 RGD
Ensembl		 PMID:11595739 GO_REF:0000107 NCBI chr14:84,962,933...84,969,148
Ensembl chr14:80,748,974...80,755,160 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:11595739)
(PMID:11595739), (PMID:38099988)		 RGD PMID:11595739 PMID:38099988 NCBI chr 1:163,830,217...163,870,015
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IMP RGD PMID:11959615 RGD:7247274 NCBI chr12:52,005,155...52,053,761
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:142,792,119...142,808,933
Ensembl chr 1:133,382,766...133,398,567 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:92,212,303...92,222,849
Ensembl chr10:91,712,586...91,723,008 		JBrowse link
G Polh DNA polymerase eta involved_in IEA GO_REF:0000043
GO_REF:0000117		 UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 9:22,275,929...22,310,576
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Poli DNA polymerase iota involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418 		JBrowse link
G Polk DNA polymerase kappa involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:29,556,831...29,616,960
Ensembl chr 2:27,822,679...27,882,313 		JBrowse link
G Poll DNA polymerase lambda involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
GO_REF:0000043
(PMID:19806195)		 UniProt
Ensembl
RGD		 PMID:19806195 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:254,349,229...254,357,689
Ensembl chr 1:244,400,204...244,408,662 		JBrowse link
G Polm DNA polymerase mu involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:84,921,039...84,930,649
Ensembl chr14:80,706,345...80,717,086 		JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA		 (PMID:23651497)
GO_REF:0000107		 RGD
Ensembl		 PMID:23651497 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sphk1 sphingosine kinase 1 acts_upstream_of_or_within ISO (PMID:23651497) RGD PMID:23651497 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase IMP RGD PMID:9227431 RGD:150521729 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO
IEA		 (PMID:9398860)
GO_REF:0000107		 RGD
Ensembl		 PMID:9398860 GO_REF:0000107 NCBI chr 1:31,465,766...31,488,650
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,533,449...103,544,818
Ensembl chr10:103,031,521...103,046,920 		JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO
IEA		 (PMID:15750620)
GO_REF:0000107		 RGD
Ensembl		 PMID:15750620 GO_REF:0000107 NCBI chr 8:28,108,036...28,110,809
Ensembl chr 8:19,831,866...19,834,674 		JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31467087)		 UniProt
Ensembl
RGD		 PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) RGD PMID:11470886 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:1730053), (PMID:24191025), (PMID:3335506)		 UniProt
Ensembl
RGD		 PMID:1730053 PMID:3335506 PMID:24191025 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,161,984...104,178,074
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:210,956,110...210,957,863
Ensembl chr 1:201,526,665...201,528,401 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IEA		 (PMID:1730053)
GO_REF:0000107		 RGD
Ensembl		 PMID:1730053 GO_REF:0000107 NCBI chr12:52,005,155...52,053,761
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Polh DNA polymerase eta involved_in ISO
IEA		 (PMID:17563354)
GO_REF:0000107		 RGD
Ensembl		 PMID:17563354 GO_REF:0000107 NCBI chr 9:22,275,929...22,310,576
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:17612497)		 Ensembl
RGD		 PMID:17612497 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:65,466,552...65,602,951
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:15670210)		 UniProt
GO_Central
Ensembl
RGD		 PMID:15670210 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr17:31,830,159...31,850,408
Ensembl chr17:31,621,411...31,641,659 		JBrowse link
DNA synthesis involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 IMP RGD PMID:15696186 RGD:2301349 NCBI chr 7:1,714,392...1,721,964
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO
IEA		 (PMID:14697231)
GO_REF:0000107		 RGD
Ensembl		 PMID:14697231 GO_REF:0000107 NCBI chr10:103,533,449...103,544,818
Ensembl chr10:103,031,521...103,046,920 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS		 (PMID:1730053)
GO_REF:0000024		 RGD
UniProt		 PMID:1730053 GO_REF:0000024 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:163,830,217...163,870,015
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA		 MGI:3052754 (PMID:23993650)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993650 GO_REF:0000107 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
ISS		 (PMID:24191025)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24191025 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,161,984...104,178,074
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in ISO
IEA
IBA		 (PMID:24191025)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:24191025 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,905,287...63,915,655
Ensembl chr10:63,407,213...63,417,605 		JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576 		JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:158,563,567...158,576,693 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO
IEA		 (PMID:24449906)
GO_REF:0000107		 RGD
Ensembl		 PMID:24449906 GO_REF:0000107 NCBI chr14:84,962,933...84,969,148
Ensembl chr14:80,748,974...80,755,160 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 1:163,830,217...163,870,015
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:93,410,713...93,448,782
Ensembl chr 6:87,674,702...87,699,305 		JBrowse link
G Polh DNA polymerase eta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:22,275,929...22,310,576
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Polk DNA polymerase kappa involved_in ISO
IEA
IBA		 (PMID:28297716)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:28297716 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:29,556,831...29,616,960
Ensembl chr 2:27,822,679...27,882,313 		JBrowse link
G Polq DNA polymerase theta involved_in ISO
IEA		 (PMID:30655289)
GO_REF:0000107		 RGD
Ensembl		 PMID:30655289 GO_REF:0000107 NCBI chr11:77,179,190...77,281,270
Ensembl chr11:63,673,816...63,775,878 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO
IEA		 (PMID:24682820), (PMID:25746449), (PMID:28534480)
GO_REF:0000002		 RGD
InterPro		 PMID:24682820 PMID:25746449 PMID:28534480 GO_REF:0000002 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:11711549)		 GO_Central
Ensembl
InterPro
RGD		 PMID:11711549 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in ISO
IEA
IBA		 (PMID:24449906)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:24449906 GO_REF:0000033 GO_REF:0000107 NCBI chr20:44,686,482...44,844,668
Ensembl chr20:43,132,363...43,290,099 		JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5314540 (PMID:22011390)
GO_REF:0000002
GO_REF:0000107		 RGD
InterPro
Ensembl		 PMID:22011390 GO_REF:0000002 GO_REF:0000107 NCBI chr10:58,443,736...58,461,578
Ensembl chr10:57,932,187...57,963,081 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:109542|MGI:3580000 (PMID:22164254)		 GO_Central
RGD		 PMID:22164254 GO_REF:0000033 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931|MGI:1913904 (PMID:22164254) RGD PMID:22164254 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO MGI:109542|MGI:3811722 (PMID:22164254) RGD PMID:22164254 NCBI chr 8:59,804,662...59,809,595
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
negative regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12070119)		 UniProt
Ensembl
RGD		 PMID:12070119 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Ahr aryl hydrocarbon receptor IDA
IMP		 RGD PMID:12193573 PMID:17952121 RGD:625678, RGD:405878083 NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Ankrd1 ankyrin repeat domain 1 involved_in ISO
IEA		 (PMID:11139470)
GO_REF:0000107		 RGD
Ensembl		 PMID:11139470 GO_REF:0000107 NCBI chr 1:243,228,460...243,237,014
Ensembl chr 1:233,815,851...233,834,919 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A involved_in ISO (PMID:11595739) RGD PMID:11595739 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Chek1 checkpoint kinase 1 IMP RGD PMID:12429946 RGD:2316115 NCBI chr 8:44,609,417...44,629,867
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in ISO
IEA		 (PMID:16980615)
GO_REF:0000107		 RGD
Ensembl		 PMID:16980615 GO_REF:0000107 NCBI chr15:80,936,063...81,317,746
Ensembl chr15:74,529,208...74,909,922 		JBrowse link
G Dnajc2 DnaJ heat shock protein family (Hsp40) member C2 acts_upstream_of_or_within ISO
IEA		 (PMID:7559602)
GO_REF:0000107		 RGD
Ensembl		 PMID:7559602 GO_REF:0000107 NCBI chr 4:14,162,490...14,189,662
Ensembl chr 4:13,270,191...13,297,431 		JBrowse link
G Dusp1 dual specificity phosphatase 1 IDA RGD PMID:10446064 RGD:7771571 NCBI chr10:17,184,853...17,187,646 JBrowse link
G Gja1 gap junction protein, alpha 1 IDA RGD PMID:14702389 RGD:8662403 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 IMP RGD PMID:23271285 RGD:9831181 NCBI chr13:103,297,387...103,494,686
Ensembl chr13:100,766,113...100,963,435 		JBrowse link
G Niban2 niban apoptosis regulator 2 involved_in ISO
IEA		 (PMID:14602737), (PMID:17569660), (PMID:20032057)
GO_REF:0000107		 RGD
Ensembl		 PMID:14602737 PMID:17569660 PMID:20032057 GO_REF:0000107 NCBI chr 3:36,572,356...36,621,968
Ensembl chr 3:16,174,659...16,224,293 		JBrowse link
G Nppc natriuretic peptide C IDA RGD PMID:12746286 RGD:1580115 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
G Rgn regucalcin IMP RGD PMID:11500948 RGD:9590199 NCBI chr  X:4,172,537...4,190,112
Ensembl chr  X:1,619,032...1,634,450 		JBrowse link
G Tp53 tumor protein p53 IMP RGD PMID:11502571 RGD:70312 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
negative regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor involved_in IEA
ISO
IBA		 GO_REF:0000107
UniProtKB:Q9NUX5 (PMID:15181449), (PMID:15380063), (PMID:25172512)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:15181449 PMID:15380063 PMID:25172512 GO_REF:0000033 GO_REF:0000107 NCBI chr19:50,496,634...50,499,397
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Ctc1 CST telomere replication complex component 1 involved_in ISO
IEA		 (PMID:22763445)
GO_REF:0000107		 RGD
Ensembl		 PMID:22763445 GO_REF:0000107 NCBI chr10:54,212,537...54,234,146
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IEA		 (PMID:26950371)
GO_REF:0000107		 RGD
Ensembl		 PMID:26950371 GO_REF:0000107 NCBI chr 5:164,278,414...164,302,067
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Gnl3l G protein nucleolar 3 like involved_in ISO
IEA		 (PMID:18082603)
GO_REF:0000107		 RGD
Ensembl		 PMID:18082603 GO_REF:0000107 NCBI chr  X:23,404,324...23,437,501
Ensembl chr  X:19,958,603...19,994,508 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:23935072) RGD PMID:23935072 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:18082603) RGD PMID:18082603 NCBI chr15:27,253,098...27,282,779
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO		 GO_REF:0000107
(PMID:18082603)		 Ensembl
RGD		 PMID:18082603 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Nat10 N-acetyltransferase 10 involved_in ISO
IEA		 (PMID:18082603)
GO_REF:0000107		 RGD
Ensembl		 PMID:18082603 GO_REF:0000107 NCBI chr 3:110,566,582...110,604,829
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in ISO
IEA		 (PMID:16522649), (PMID:23657261)
GO_REF:0000107
GO_REF:0000104		 RGD
Ensembl
UniProt		 PMID:16522649 PMID:23657261 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200 		JBrowse link
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 involved_in ISO (PMID:11701125), (PMID:21119197) RGD PMID:11701125 PMID:21119197 NCBI chr15:42,273,805...42,333,047
Ensembl chr15:38,097,886...38,157,140 		JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:19567472) RGD PMID:19567472 NCBI chr 8:67,523,164...67,557,801
Ensembl chr 8:58,628,837...58,658,971 		JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO UniProtKB:Q96AP0 (PMID:15181449), (PMID:15632080) RGD PMID:15181449 PMID:15632080 NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Stn1 STN1 subunit of CST complex involved_in ISO (PMID:22763445) RGD PMID:22763445 NCBI chr 1:256,336,916...256,371,143
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
G Ten1 TEN1 subunit of CST complex involved_in ISO
IBA		 (PMID:22763445)
GO_REF:0000033		 RGD
GO_Central		 PMID:22763445 GO_REF:0000033 NCBI chr10:101,431,328...101,455,105
Ensembl chr10:101,431,328...101,453,052 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) RGD PMID:26950371 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Terf1 telomeric repeat binding factor 1 involved_in ISO
IEA		 UniProtKB:O14746 (PMID:11971978)
GO_REF:0000107		 RGD
Ensembl		 PMID:11971978 GO_REF:0000107 NCBI chr 5:8,226,345...8,255,614
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 involved_in ISO
IEA		 (PMID:17055345)
GO_REF:0000107		 RGD
Ensembl		 PMID:17055345 GO_REF:0000107 NCBI chr19:51,887,221...51,915,756
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 involved_in ISO (PMID:10581025), (PMID:15133513) RGD PMID:10581025 PMID:15133513 NCBI chr15:33,140,611...33,146,930
Ensembl chr15:29,170,652...29,176,984 		JBrowse link
G Tp53 tumor protein p53 involved_in IEA
ISO		 GO_REF:0000107
(PMID:10597287)		 Ensembl
RGD		 PMID:10597287 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
positive regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb2 arrestin, beta 2 IMP RGD PMID:19254952 RGD:5509898 NCBI chr10:55,645,539...55,653,485
Ensembl chr10:55,146,818...55,154,850 		JBrowse link
G C3ar1 complement C3a receptor 1 IMP RGD PMID:23713944 RGD:7411623 NCBI chr 4:157,747,419...157,756,609
Ensembl chr 4:156,075,389...156,084,701 		JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta IMP RGD PMID:17267544 RGD:2303063 NCBI chr 2:217,698,324...217,961,898
Ensembl chr 2:215,024,004...215,286,178 		JBrowse link
G Ccna2 cyclin A2 IMP RGD PMID:18667424 RGD:10054494 NCBI chr 2:121,355,363...121,361,762
Ensembl chr 2:119,426,089...119,433,577 		JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IMP RGD PMID:16005543 RGD:5131269 NCBI chr 4:85,553,163...85,596,203
Ensembl chr 4:84,224,002...84,265,904 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IMP RGD PMID:20439821 RGD:7829726 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Ddx39b DExD-box helicase 39B IMP RGD PMID:22446327 RGD:10401140 NCBI chr20:3,577,200...3,589,651
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G Egf epidermal growth factor IDA RGD PMID:3093142 RGD:10395243 NCBI chr 2:220,893,660...220,976,331
Ensembl chr 2:218,219,415...218,302,064 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO
IEA		 UniProtKB:Q9H3U7 (PMID:16774925)
GO_REF:0000107		 RGD
Ensembl		 PMID:16774925 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 involved_in ISO
IEA
ISS		 (PMID:21653700)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21653700 GO_REF:0000024 GO_REF:0000107 NCBI chr17:9,466,686...9,481,423
Ensembl chr17:9,461,547...9,476,242 		JBrowse link
G Gfer growth factor, augmenter of liver regeneration IDA RGD PMID:16937468 RGD:9685728 NCBI chr10:14,223,023...14,225,736
Ensembl chr10:13,718,489...13,720,869 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta IMP RGD PMID:12721208 RGD:10045365 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Hgf hepatocyte growth factor involved_in ISO
IEA		 (PMID:2531289)
GO_REF:0000107		 RGD
Ensembl		 PMID:2531289 GO_REF:0000107 NCBI chr 4:19,628,902...19,700,467
Ensembl chr 4:18,677,101...18,745,409 		JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IMP RGD PMID:18358471 RGD:401938603 NCBI chr15:56,360,647...56,428,703
Ensembl chr15:49,950,804...50,020,928 		JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 IMP RGD PMID:18667424 RGD:10054494 NCBI chr18:76,321,386...76,430,997
Ensembl chr18:74,046,904...74,156,028 		JBrowse link
G Nox4 NADPH oxidase 4 involved_in ISO
IEA		 (PMID:17942966)
GO_REF:0000107		 RGD
Ensembl		 PMID:17942966 GO_REF:0000107 NCBI chr 1:150,313,736...150,491,480
Ensembl chr 1:140,901,097...141,077,406 		JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 IMP RGD PMID:12890786 RGD:7775030 NCBI chr  X:111,912,967...112,171,037
Ensembl chr  X:107,260,898...107,368,314 		JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:10644978), (PMID:10734101), (PMID:11788434), (PMID:12070119), (PMID:17942966), (PMID:19019919)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:10644978 PMID:10734101 PMID:11788434 PMID:12070119 PMID:17942966 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO		 GO_REF:0000024
(PMID:19019919)		 UniProt
RGD		 PMID:19019919 GO_REF:0000024 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Prkd2 protein kinase D2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17226786)		 UniProt
Ensembl
RGD		 PMID:17226786 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:86,640,095...86,670,476
Ensembl chr 1:77,513,986...77,542,376 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta IMP RGD PMID:21451101 RGD:10041071 NCBI chr15:44,536,275...44,656,754
Ensembl chr15:40,360,723...40,481,282 		JBrowse link
G Rgcc regulator of cell cycle involved_in IDA PMID:9756947 BHF-UCL PMID:9756947 RGD:633887 NCBI chr15:61,071,574...61,084,408
Ensembl chr15:54,662,483...54,681,141 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 involved_in ISO
IEA		 UniProtKB:P09038|UniProtKB:P15692-4 (PMID:16774925)
GO_REF:0000107		 RGD
Ensembl		 PMID:16774925 GO_REF:0000107 NCBI chr 1:63,935,627...64,064,952
Ensembl chr 1:55,262,530...55,391,693 		JBrowse link
G Tnf tumor necrosis factor IDA RGD PMID:9395232 RGD:14696805 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO UniProtKB:Q9H3U7 (PMID:16774925) RGD PMID:16774925 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtf18 chromosome transmission fidelity factor 18 involved_in ISO (PMID:12930902) RGD PMID:12930902 NCBI chr10:15,247,525...15,255,573
Ensembl chr10:14,742,621...14,751,050 		JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12930902)		 UniProt
RGD		 PMID:12930902 GO_REF:0000024 NCBI chr19:51,691,776...51,702,076
Ensembl chr19:34,781,856...34,792,578 		JBrowse link
G Dscc1 DNA replication and sister chromatid cohesion 1 involved_in ISO (PMID:12930902) RGD PMID:12930902 NCBI chr 7:88,372,349...88,390,815
Ensembl chr 7:86,482,588...86,498,212 		JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:8123045 RGD:11535022 NCBI chr10:18,245,739...18,255,913
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:11595739) RGD PMID:11595739 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in ISO (PMID:10608893) RGD PMID:10608893 NCBI chr10:92,212,303...92,222,849
Ensembl chr10:91,712,586...91,723,008 		JBrowse link
G Rfc2 replication factor C subunit 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12930902)		 UniProt
RGD		 PMID:12930902 GO_REF:0000024 NCBI chr12:27,756,920...27,770,049
Ensembl chr12:22,120,010...22,133,557 		JBrowse link
G Rfc3 replication factor C subunit 3 involved_in ISO (PMID:12930902) RGD PMID:12930902 NCBI chr12:5,836,546...5,847,331
Ensembl chr12:1,000,994...1,011,778 		JBrowse link
G Rfc4 replication factor C subunit 4 involved_in ISO (PMID:12930902) RGD PMID:12930902 NCBI chr11:91,254,273...91,268,727
Ensembl chr11:77,749,638...77,764,122 		JBrowse link
G Rfc5 replication factor C subunit 5 involved_in ISO (PMID:12930902) RGD PMID:12930902 NCBI chr12:44,868,322...44,877,879
Ensembl chr12:39,207,484...39,217,312 		JBrowse link
positive regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586427) RGD PMID:26586427 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586427) RGD PMID:26586427 NCBI chr 8:105,306,299...105,403,742
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Cct2 chaperonin containing TCP1 subunit 2 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr 7:54,578,654...54,591,428
Ensembl chr 7:52,692,725...52,706,944 		JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr 2:176,063,529...176,088,180
Ensembl chr 2:173,765,698...173,790,757 		JBrowse link
G Cct4 chaperonin containing TCP1 subunit 4 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr14:101,193,057...101,205,935
Ensembl chr14:96,991,859...97,005,267 		JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr 2:84,302,621...84,313,773
Ensembl chr 2:82,590,630...82,602,930 		JBrowse link
G Cct6a chaperonin containing TCP1 subunit 6A acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr12:32,508,842...32,519,072
Ensembl chr12:26,872,574...26,883,337 		JBrowse link
G Cct7 chaperonin containing TCP1 subunit 7 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr 4:119,546,730...119,563,973
Ensembl chr 4:117,989,232...118,006,580 		JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr11:26,710,370...26,722,079
Ensembl chr11:26,710,370...26,722,079 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of ISO
IEA		 (PMID:22723415)
GO_REF:0000107		 RGD
Ensembl		 PMID:22723415 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 acts_upstream_of_or_within ISO MGI:3849598 (PMID:15240872)
(PMID:23685356), (PMID:25467444)		 RGD PMID:15240872 PMID:23685356 PMID:25467444 NCBI chr  X:157,751,651...157,757,796 JBrowse link
G Fbxo4 F-box protein 4 involved_in ISO
IEA		 (PMID:16275645)
GO_REF:0000107		 RGD
Ensembl		 PMID:16275645 GO_REF:0000107 NCBI chr 2:54,902,394...54,915,388
Ensembl chr 2:53,174,798...53,187,792 		JBrowse link
G Gch1 GTP cyclohydrolase 1 IMP RGD PMID:30690003 RGD:401717569 NCBI chr15:22,884,006...22,917,412
Ensembl chr15:20,402,527...20,437,698 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:23935072) RGD PMID:23935072 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D acts_upstream_of ISO
IEA		 (PMID:22633954)
GO_REF:0000107		 RGD
Ensembl		 PMID:22633954 GO_REF:0000107 NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein acts_upstream_of ISO (PMID:27510903) RGD PMID:27510903 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO
IEA		 (PMID:26482878), (PMID:26950371)
GO_REF:0000107		 RGD
Ensembl		 PMID:26482878 PMID:26950371 GO_REF:0000107 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO (PMID:12768206), (PMID:12781132), (PMID:17237768) RGD PMID:12768206 PMID:12781132 PMID:17237768 NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in ISO (PMID:19740745) RGD PMID:19740745 NCBI chr 7:1,075,230...1,092,363
Ensembl chr 7:490,656...508,084 		JBrowse link
G Tcp1 t-complex 1 acts_upstream_of ISO
IEA		 (PMID:25467444)
GO_REF:0000107		 RGD
Ensembl		 PMID:25467444 GO_REF:0000107 NCBI chr 1:50,376,848...50,384,527
Ensembl chr 1:47,828,652...47,836,839 		JBrowse link
G Terc telomerase RNA component acts_upstream_of_or_within ISO MGI:1857930 (PMID:17982445) RGD PMID:17982445 NCBI chr 2:114,744,148...114,744,535 JBrowse link
G Tnks tankyrase involved_in ISO (PMID:11739745), (PMID:12782650), (PMID:18221737) RGD PMID:11739745 PMID:12782650 PMID:18221737 NCBI chr16:57,223,174...57,370,740
Ensembl chr16:57,225,094...57,366,260 		JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 acts_upstream_of ISO
IEA		 (PMID:23685356)
GO_REF:0000107		 RGD
Ensembl		 PMID:23685356 GO_REF:0000107 NCBI chr10:54,780,873...54,797,919
Ensembl chr10:54,282,105...54,298,929 		JBrowse link
regulation of DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A acts_upstream_of_or_within ISO MGI:1933751 (PMID:11981756) RGD PMID:11981756 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Ing4 inhibitor of growth family, member 4 involved_in ISO
IEA		 (PMID:16387653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16387653 GO_REF:0000107 NCBI chr 4:159,528,183...159,536,762
Ensembl chr 4:157,841,951...157,850,265 		JBrowse link
G Ing5 inhibitor of growth family, member 5 involved_in ISO
IEA		 (PMID:16387653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16387653 GO_REF:0000107 NCBI chr 9:101,772,845...101,793,734
Ensembl chr 9:94,326,548...94,344,220 		JBrowse link
G Jade1 jade family PHD finger 1 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 2:126,471,124...126,524,252
Ensembl chr 2:124,543,286...124,596,354 		JBrowse link
G Jade2 jade family PHD finger 2 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr10:36,576,187...36,625,129
Ensembl chr10:36,078,917...36,116,984 		JBrowse link
G Jade3 jade family PHD finger 3 involved_in ISO
IEA		 (PMID:16387653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16387653 GO_REF:0000107 NCBI chr  X:4,222,369...4,424,164
Ensembl chr  X:1,669,930...1,845,138 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO
IEA		 (PMID:16387653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16387653 GO_REF:0000107 NCBI chr10:80,718,335...80,752,387
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 5:142,628,281...142,653,076
Ensembl chr 5:137,344,380...137,370,014 		JBrowse link
G Pdgfa platelet derived growth factor subunit A NOT|involved_in ISO
ISS		 (PMID:11788434), (PMID:19019919)
GO_REF:0000024		 RGD
UniProt		 PMID:11788434 PMID:19019919 GO_REF:0000024 NCBI chr12:20,759,366...20,780,337
Ensembl chr12:15,645,541...15,666,497 		JBrowse link
G Sh2b1 SH2B adaptor protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:10644978)		 Ensembl
RGD		 PMID:10644978 GO_REF:0000107 NCBI chr 1:190,479,211...190,492,030
Ensembl chr 1:181,048,623...181,056,579 		JBrowse link
G Tfdp1 transcription factor Dp-1 acts_upstream_of_or_within ISO
IEA		 (PMID:15448153)
GO_REF:0000107		 RGD
Ensembl		 PMID:15448153 GO_REF:0000107 NCBI chr16:82,864,220...82,903,166
Ensembl chr16:76,162,043...76,200,817 		JBrowse link
G Tom1l1 target of myb1 like 1 membrane trafficking protein NOT|involved_in ISO (PMID:16479011) RGD PMID:16479011 NCBI chr10:75,961,653...76,005,725
Ensembl chr10:75,464,577...75,508,250 		JBrowse link
regulation of telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO UniProtKB:Q9NUX5 (PMID:26586433) RGD PMID:26586433 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO
IBA		 UniProtKB:Q13315 (PMID:26586433)
GO_REF:0000033		 RGD
GO_Central		 PMID:26586433 GO_REF:0000033 NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Pot1b protection of telomeres 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532 		JBrowse link
G Terf2 telomeric repeat binding factor 2 involved_in ISO
IEA
IBA		 (PMID:19864690), (PMID:23685356)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:19864690 PMID:23685356 GO_REF:0000033 GO_REF:0000107 NCBI chr19:51,887,221...51,915,756
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
RNA-templated DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000065207 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 4:104,244,335...104,246,214 JBrowse link
G ENSRNOG00000067229 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:83,921,470...83,930,590 JBrowse link
G ENSRNOG00000067248 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 9:77,055,483...77,060,879 JBrowse link
G ENSRNOG00000068406 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 4:51,689,402...51,693,026 JBrowse link
G ENSRNOG00000069140 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 4:12,337,547...12,343,488 JBrowse link
G ENSRNOG00000069624 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:147,700,824...147,706,682 JBrowse link
G LOC134480950 igE-binding protein-like involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr11:12,193,771...12,199,421 JBrowse link
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:48,243,365...48,253,316
Ensembl chr 9:48,237,572...48,253,211 		JBrowse link
G Tep1 telomerase associated protein 1 involved_in IEA
IC		 GO_REF:0000108
PMID:9118230		 GOC PMID:9118230 GO_REF:0000108, RGD:1299082 NCBI chr15:26,519,429...26,567,073
Ensembl chr15:24,045,878...24,093,526 		JBrowse link
G Terf2 telomeric repeat binding factor 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:51,887,221...51,915,756
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO
IEA		 (PMID:9398860)
GO_REF:0000107
GO_REF:0000108		 RGD
Ensembl
GOC		 PMID:9398860 GO_REF:0000107 GO_REF:0000108 NCBI chr 1:31,465,766...31,488,650
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
telomere maintenance via telomerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor involved_in IEA
ISO		 GO_REF:0000107
GO_REF:0000002
(PMID:17237768)		 Ensembl
InterPro
RGD		 PMID:17237768 GO_REF:0000002 GO_REF:0000107 NCBI chr19:50,496,634...50,499,397
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO		 GO_REF:0000024
GO:0090669 (PMID:26950371), (PMID:29695869)		 UniProt
RGD		 PMID:26950371 PMID:29695869 GO_REF:0000024 NCBI chr  X:157,751,651...157,757,796 JBrowse link
G Gar1 GAR1 ribonucleoprotein involved_in ISS
ISO		 GO_REF:0000024
(PMID:29695869)		 UniProt
RGD		 PMID:29695869 GO_REF:0000024 NCBI chr 2:221,049,471...221,056,749
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Hmbox1 homeobox containing 1 involved_in ISO
IEA		 (PMID:23685356)
GO_REF:0000107		 RGD
Ensembl		 PMID:23685356 GO_REF:0000107 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 acts_upstream_of_positive_effect ISO
IEA		 (PMID:10197982)
GO_REF:0000107		 RGD
Ensembl		 PMID:10197982 GO_REF:0000107 NCBI chr 6:135,523,604...135,529,687
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 acts_upstream_of_positive_effect ISO
IEA		 (PMID:10197982)
GO_REF:0000107		 RGD
Ensembl		 PMID:10197982 GO_REF:0000107 NCBI chr 9:22,930,249...22,935,929
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in ISO
IEA		 (PMID:29695869)
GO_REF:0000107		 RGD
Ensembl		 PMID:29695869 GO_REF:0000107 NCBI chr10:36,378,020...36,381,362
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in ISO (PMID:29695869) RGD PMID:29695869 NCBI chr 3:119,521,255...119,522,340
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
G Parp4 poly (ADP-ribose) polymerase family, member 4 NOT|acts_upstream_of_or_within ISO MGI:109573 (PMID:15169895) RGD PMID:15169895 NCBI chr15:30,690,503...30,792,868
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 acts_upstream_of_or_within ISO (PMID:11701125) RGD PMID:11701125 NCBI chr15:42,273,805...42,333,047
Ensembl chr15:38,097,886...38,157,140 		JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO (PMID:12768206), (PMID:16043710), (PMID:27013236), (PMID:30586141), (PMID:35420632), (PMID:37140166) RGD PMID:12768206 PMID:16043710 PMID:27013236 PMID:30586141 PMID:35420632 More... NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in
acts_upstream_of_positive_effect		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:10197982)		 GO_Central
Ensembl
RGD		 PMID:10197982 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:1,075,230...1,092,363
Ensembl chr 7:490,656...508,084 		JBrowse link
G Ptges3l1 prostaglandin E synthase 3-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:42,215,200...42,224,472
Ensembl chr  X:42,214,756...42,225,047 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO
IBA
IEA
ISS		 (PMID:9705271)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:9705271 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:38,310,147...38,362,100
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rpa1 replication protein A1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:60,647,185...60,698,279
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Tep1 telomerase associated protein 1 NOT|acts_upstream_of_or_within ISO MGI:2685589 (PMID:15169895) RGD PMID:15169895 NCBI chr15:26,519,429...26,567,073
Ensembl chr15:24,045,878...24,093,526 		JBrowse link
G Terc telomerase RNA component acts_upstream_of
involved_in		 TAS
ISO		 MGI:1857930 (PMID:17982445)
(PMID:17940095), (PMID:19701182), (PMID:9443919)		 RGD PMID:9443919 PMID:17940095 PMID:17982445 PMID:19701182 PMID:10423530 RGD:1299555 NCBI chr 2:114,744,148...114,744,535 JBrowse link
G Terf1 telomeric repeat binding factor 1 involved_in ISO
IEA		 (PMID:9034193)
GO_REF:0000107
(PMID:23685356)		 RGD
Ensembl		 PMID:9034193 PMID:23685356 GO_REF:0000107 NCBI chr 5:8,226,345...8,255,614
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO
IEA
IBA
ISS		 (PMID:16043710), (PMID:17940095), (PMID:19701182), (PMID:21531765), (PMID:29695869), (PMID:9443919), (PMID:9454332)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:9443919 PMID:9454332 PMID:16043710 PMID:17940095 PMID:19701182 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:31,465,766...31,488,650
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29695869), (PMID:29804836)		 UniProt
Ensembl
RGD		 PMID:29695869 PMID:29804836 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,780,873...54,797,919
Ensembl chr10:54,282,105...54,298,929 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:19188702) RGD PMID:19188702 NCBI chr 9:81,404,507...81,493,293
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in ISO
IEA		 (PMID:20129063)
GO_REF:0000107		 RGD
Ensembl		 PMID:20129063 GO_REF:0000107 NCBI chr13:105,646,908...105,685,921
Ensembl chr13:103,117,186...103,154,890 		JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO
ISS		 (PMID:22266823)
GO_REF:0000024		 RGD
UniProt		 PMID:22266823 GO_REF:0000024 NCBI chr 5:171,083,328...171,097,599
Ensembl chr 5:165,808,657...165,815,333 		JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO
IEA		 (PMID:24695737)
GO_REF:0000107		 RGD
Ensembl		 PMID:24695737 GO_REF:0000107 NCBI chr 7:109,829,721...109,839,054
Ensembl chr 7:107,949,043...107,958,304 		JBrowse link
G Pclaf PCNA clamp associated factor involved_in ISO
IBA
ISS		 (PMID:23000965)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:23000965 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:75,311,028...75,328,108
Ensembl chr 8:66,420,587...66,432,994
Ensembl chr 8:66,420,587...66,432,994 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO
IEA
IBA
ISS		 (PMID:20129063)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:20129063 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Poli DNA polymerase iota involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3055735 (PMID:17114294)		 GO_Central
RGD		 PMID:17114294 GO_REF:0000033 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418 		JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19908865), (PMID:20102227) RGD PMID:19908865 PMID:20102227 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO
IBA		 (PMID:24240614), (PMID:24267451)
GO_REF:0000033		 RGD
GO_Central		 PMID:24240614 PMID:24267451 GO_REF:0000033 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:44,686,482...44,844,668
Ensembl chr20:43,132,363...43,290,099 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:22681887), (PMID:22902628), (PMID:23042605), (PMID:23042607)		 Ensembl
UniProt
RGD		 PMID:22681887 PMID:22902628 PMID:23042605 PMID:23042607 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,857,612...52,864,864
Ensembl chr19:52,857,866...52,864,864 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IEA
ISS		 (PMID:23042605)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:23042605 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO
IEA		 (PMID:24657165)
GO_REF:0000107		 RGD
Ensembl		 PMID:24657165 GO_REF:0000107 NCBI chr 6:100,832,506...100,864,019
Ensembl chr 6:95,096,387...95,118,996 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        macromolecule metabolic process 9996
          macromolecule biosynthetic process 7646
            nucleic acid biosynthetic process 4523
              DNA biosynthetic process 180
                DNA amplification + 0
                DNA synthesis involved in DNA repair + 35
                DNA synthesis involved in DNA replication + 2
                RNA-templated DNA biosynthetic process + 63
                negative regulation of DNA biosynthetic process + 33
                positive regulation of DNA biosynthetic process + 58
                regulation of DNA biosynthetic process + 101
                viral DNA genome replication + 0
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        primary metabolic process 10745
          nucleobase-containing compound metabolic process 5888
            nucleic acid metabolic process 5280
              nucleic acid biosynthetic process 4523
                DNA biosynthetic process 180
                  DNA amplification + 0
                  DNA synthesis involved in DNA repair + 35
                  DNA synthesis involved in DNA replication + 2
                  RNA-templated DNA biosynthetic process + 63
                  negative regulation of DNA biosynthetic process + 33
                  positive regulation of DNA biosynthetic process + 58
                  regulation of DNA biosynthetic process + 101
                  viral DNA genome replication + 0
paths to the root