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ONTOLOGY REPORT - ANNOTATIONS

Term:protein-DNA complex organization
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Accession:GO:0071824 term browser browse the term
Definition:Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA complex.
Synonyms:exact_synonym: DNA-protein complex subunit organization;   protein-DNA complex subunit organisation


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CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A involved_in ISO (PMID:11682612) RGD PMID:11682612 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G Cenpi centromere protein I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,515,919...97,567,671
Ensembl chr  X:97,515,972...97,567,657 		JBrowse link
G Cenpn centromere protein N involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:44,971,265...44,994,019
Ensembl chr19:44,968,308...44,994,012 		JBrowse link
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,014,087...15,189,312
Ensembl chr17:15,014,058...15,189,304 		JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA		 (PMID:19410544), (PMID:19410545)
GO_REF:0000033		 RGD
GO_Central		 PMID:19410544 PMID:19410545 GO_REF:0000033 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728 		JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704 		JBrowse link
G Mis18a MIS18 kinetochore protein A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:5441069 (PMID:22516971)		 GO_Central
RGD		 PMID:22516971 GO_REF:0000033 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062 		JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928 		JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250 		JBrowse link
centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpi centromere protein I involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,515,919...97,567,671
Ensembl chr  X:97,515,972...97,567,657 		JBrowse link
G Cenpo centromere protein O involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:27,203,642...27,218,394
Ensembl chr 6:27,188,537...27,218,314 		JBrowse link
G Cenpv centromere protein V involved_in ISO (PMID:18772885) RGD PMID:18772885 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761 		JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:26681308) RGD PMID:26681308 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207 		JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO
IBA		 (PMID:11125146)
GO_REF:0000033		 RGD
GO_Central		 PMID:11125146 GO_REF:0000033 NCBI chr19:50,620,713...50,625,659
Ensembl chr19:50,620,713...50,625,659 		JBrowse link
G Gmnn geminin, DNA replication inhibitor involved_in ISO (PMID:11125146) RGD PMID:11125146 NCBI chr17:40,301,771...40,310,054
Ensembl chr17:40,301,808...40,310,054 		JBrowse link
DNA-templated transcription open complex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:14580349) RGD PMID:14580349 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A involved_in ISO (PMID:11682612) RGD PMID:11682612 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G Cenpc centromere protein C involved_in ISO
IBA		 (PMID:21529714)
GO_REF:0000033		 RGD
GO_Central		 PMID:21529714 GO_REF:0000033 NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476 		JBrowse link
G Cenpe centromere protein E involved_in ISO (PMID:9763420) RGD PMID:9763420 NCBI chr 2:223,637,035...223,695,692
Ensembl chr 2:223,636,998...223,695,669 		JBrowse link
G Cenph centromere protein H involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,896,675...31,910,179
Ensembl chr 2:31,894,667...31,910,154 		JBrowse link
G Cenpk centromere protein K involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:35,360,390...35,421,372
Ensembl chr 2:35,360,132...35,385,706 		JBrowse link
G Cenpt centromere protein T involved_in ISO
IEA
ISS		 (PMID:21529714)
GO_REF:0000002
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:21529714 GO_REF:0000002 GO_REF:0000024 NCBI chr19:33,734,684...33,741,159
Ensembl chr19:33,734,685...33,741,142 		JBrowse link
G Cenpw centromere protein W involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21695110)		 UniProt
GO_Central
RGD		 PMID:21695110 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:27,525,324...27,530,464
Ensembl chr 1:27,525,324...27,530,464 		JBrowse link
G Cenpwl1 centromere protein W like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:53,848,491...53,848,803
Ensembl chr  X:53,848,510...53,848,770 		JBrowse link
G Dlgap5 DLG associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:20,633,964...20,664,569
Ensembl chr15:20,633,966...20,664,518 		JBrowse link
G ENSRNOG00000068966 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr10:13,018,919...13,019,963 JBrowse link
G Mis12 MIS12 kinetochore complex component involved_in ISO
IBA
IEA		 (PMID:16585270)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:16585270 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,739,741...55,747,915
Ensembl chr10:55,739,564...55,751,068 		JBrowse link
G Pogz pogo transposable element derived with ZNF domain involved_in ISO (PMID:20562864) RGD PMID:20562864 NCBI chr 2:182,394,269...182,440,711
Ensembl chr 2:182,380,768...182,440,707 		JBrowse link
G Sugt1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:32483152)
GO_REF:0000024
(PMID:15133482), (PMID:20404110)		 Ensembl
RGD
UniProt		 PMID:15133482 PMID:20404110 PMID:32483152 GO_REF:0000024 GO_REF:0000107 NCBI chr15:54,991,419...55,032,244
Ensembl chr15:54,990,672...55,069,150 		JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (PMID:27760146) RGD PMID:27760146 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248 		JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (PMID:27760146) RGD PMID:27760146 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
negative regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp827 zinc finger protein 827 involved_in ISO (PMID:25150861) RGD PMID:25150861 NCBI chr19:28,720,568...28,887,381
Ensembl chr19:28,721,021...28,887,191 		JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO
IEA		 (PMID:20538007)
GO_REF:0000107		 RGD
Ensembl		 PMID:20538007 GO_REF:0000107 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO (PMID:11897662)
(PMID:14718166)		 RGD PMID:11897662 PMID:14718166 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within		 ISO (PMID:14718166)
(PMID:12842904)		 RGD PMID:12842904 PMID:14718166 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549 		JBrowse link
G Atad2 ATPase family, AAA domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:89,634,123...89,676,738
Ensembl chr 7:89,634,123...89,676,738 		JBrowse link
G Atad2b ATPase family, AAA domain containing 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,914,546...28,070,103
Ensembl chr 6:27,912,862...28,067,047 		JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO
IEA
ISS		 (PMID:20651253)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20651253 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459 		JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO
ISS		 (PMID:18406326)
GO_REF:0000024		 RGD
UniProt		 PMID:18406326 GO_REF:0000024 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO
IEA		 (PMID:14718166)
GO_REF:0000107		 RGD
Ensembl		 PMID:14718166 GO_REF:0000107 NCBI chr20:12,893,314...13,015,357
Ensembl chr20:12,893,358...13,015,357 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO
IBA		 (PMID:14718166)
GO_REF:0000033		 RGD
GO_Central		 PMID:14718166 GO_REF:0000033 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO
IBA		 (PMID:14718166)
GO_REF:0000033		 RGD
GO_Central		 PMID:14718166 GO_REF:0000033 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136 		JBrowse link
G Daxx death-domain associated protein involved_in ISO
IBA
IEA		 (PMID:20504901), (PMID:20651253)
(PMID:20651253)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:20504901 PMID:20651253 GO_REF:0000033 GO_REF:0000107 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) RGD PMID:33857403 NCBI chr15:3,923,842...3,928,118
Ensembl chr15:3,923,268...3,928,118 		JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO
ISS
IEA		 (PMID:25990725), (PMID:27552915)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:25990725 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201 		JBrowse link
G H1f0 H1.0 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,441,578
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f8 H1.8 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,531...82,363,105
Ensembl chr  X:82,362,633...82,362,983 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
(PMID:23884607)
(PMID:17261847)
GO_REF:0000107
(PMID:24699735)		 UniProt
RGD
Ensembl		 PMID:17261847 PMID:23884607 PMID:24699735 GO_REF:0000024 GO_REF:0000107 NCBI chr17:41,172,041...41,172,510
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782 		JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,379...41,368,902
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856 		JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,531,502...41,531,971
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469 		JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
G H3f4 H3.4 histone, cluster member involved_in ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,702...43,741,262 JBrowse link
G H4c14 H4 clustered histone 14 involved_in ISO
IBA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000033		 RGD
GO_Central		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000033 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048 		JBrowse link
G H4cl1 histone H4C like 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO
IEA		 (PMID:14718166)
GO_REF:0000107		 RGD
Ensembl		 PMID:14718166 GO_REF:0000107 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hira histone cell cycle regulator involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,568,181...41,569,093
Ensembl chr17:41,568,471...41,569,109 		JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,704,740...42,705,130
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr17:42,698,025...42,698,958
Ensembl chr 2:42,698,025...42,698,958
Ensembl chr 4:42,698,025...42,698,958 		JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO
IBA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000033		 RGD
GO_Central		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000033 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370 		JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO
IBA		 (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
GO_REF:0000033		 RGD
GO_Central		 PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 GO_REF:0000033 NCBI chr17:42,698,016...42,698,420
Ensembl chr17:42,698,025...42,698,958 		JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,296...183,837,721
Ensembl chr 2:183,837,303...183,837,752 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
Ensembl chr 1:32,710,658...32,713,140 		JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000 		JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606 		JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316 		JBrowse link
G LOC125610325 histone H4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC317165 similar to Set alpha isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:39,589,341...39,596,429 JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IEA GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (PMID:10531422) RGD PMID:10531422 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21981917)		 UniProt
Ensembl
RGD		 PMID:21981917 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,622,554...11,653,078
Ensembl chr10:11,587,916...11,642,755 		JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593 		JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:68,174,051...68,176,449
Ensembl chr  X:68,173,987...68,176,666 		JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:88,347,595...88,350,393
Ensembl chr  X:88,347,598...88,350,393 		JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in ISO
IBA
IEA
ISS		 (PMID:9325046)
GO_REF:0000033
(PMID:28366643)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
InterPro
Ensembl
UniProt		 PMID:9325046 PMID:28366643 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020 		JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:88,022,670...88,024,988
Ensembl chr 4:88,022,569...88,024,654 		JBrowse link
G Nap1l6 nucleosome assembly protein 1 like 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:118,084,674...118,085,850
Ensembl chr 7:118,084,696...118,085,850 		JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412)
(PMID:14718166)		 RGD PMID:14718166 PMID:25615412 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24463520)		 UniProt
RGD		 PMID:24463520 GO_REF:0000024 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362 		JBrowse link
G Pkn3 protein kinase N3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,350,082...13,363,572
Ensembl chr 3:13,335,041...13,363,567 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
Ensembl chr 2:141,638,421...141,675,284 		JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835), (PMID:12972596) RGD PMID:11691835 PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Set Set nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,334,564...13,345,598
Ensembl chr 3:13,335,041...13,363,567 		JBrowse link
G Setl2 SET-like protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,449,482...86,450,302
Ensembl chr  X:119,908,942...119,909,886
Ensembl chr 1:119,908,942...119,909,886 		JBrowse link
G Setsip SET like protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:53,561,262...53,562,780
Ensembl chr19:53,561,190...53,563,819 		JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 involved_in ISO (PMID:11691835), (PMID:12972596), (PMID:14759371) RGD PMID:11691835 PMID:12972596 PMID:14759371 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (PMID:23752591) RGD PMID:23752591 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS		 (PMID:20484372)
GO_REF:0000024		 RGD
UniProt		 PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA		 (PMID:23378026)
GO_REF:0000033		 RGD
GO_Central		 PMID:23378026 GO_REF:0000033 NCBI chr 1:97,531,495...97,549,616
Ensembl chr 1:97,531,508...97,549,581 		JBrowse link
G Tspy1 testis specific protein, Y-linked 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tspy26 testis specific protein, Y-linked 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:141,690,653...141,692,729
Ensembl chr 3:141,689,899...141,692,670 		JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,439,478...21,445,208
Ensembl chr  X:21,439,478...21,445,089 		JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,098,756...38,100,752
Ensembl chr20:38,098,677...38,103,053 		JBrowse link
G Tspyl5 TSPY-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:64,881,504...64,885,512
Ensembl chr 7:64,884,225...64,885,457 		JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,496,576...10,532,010
Ensembl chr10:10,496,576...10,532,010 		JBrowse link
nucleosome disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512 		JBrowse link
G Atad2 ATPase family, AAA domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:89,634,123...89,676,738
Ensembl chr 7:89,634,123...89,676,738 		JBrowse link
G Atad2b ATPase family, AAA domain containing 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,914,546...28,070,103
Ensembl chr 6:27,912,862...28,067,047 		JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:27552915)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201 		JBrowse link
G H2ac25 H2A clustered histone 25 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23884607)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23884607 GO_REF:0000024 GO_REF:0000107 NCBI chr17:41,172,041...41,172,510
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IDA
IEA
ISO		 GO_REF:0000107
(PMID:8895581)		 Ensembl
RGD		 PMID:8895581 PMID:9001244 GO_REF:0000107, RGD:634124 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 8:110,111,097...110,214,734
Ensembl chr 8:110,111,122...110,214,720 		JBrowse link
G Smarcc2 SWI/SNF related BAF chromatin remodeling complex subunit C2 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978 		JBrowse link
G Smarcd1 SWI/SNF related BAF chromatin remodeling complex subunit D1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323 		JBrowse link
G Smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 involved_in ISO
IEA		 (PMID:8895581)
GO_REF:0000107		 RGD
Ensembl		 PMID:8895581 GO_REF:0000107 NCBI chr10:91,193,752...91,202,817
Ensembl chr10:91,193,752...91,204,341 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 involved_in ISO (PMID:8895581) RGD PMID:8895581 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989 		JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in ISO
IEA		 (PMID:16902406)
GO_REF:0000107		 RGD
Ensembl		 PMID:16902406 GO_REF:0000107 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in ISO (PMID:16902406) RGD PMID:16902406 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846 		JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS		 (PMID:10781074)
GO_REF:0000024		 RGD
UniProt		 PMID:10781074 GO_REF:0000024 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
G Trim17 tripartite motif-containing 17 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:43,743,111...43,750,929
Ensembl chr10:43,740,604...43,750,919 		JBrowse link
nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd1 chromodomain helicase DNA binding protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125 		JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:127,188,146...127,317,041
Ensembl chr 1:127,190,059...127,300,502 		JBrowse link
G Lin54 lin-54 DREAM MuvB core complex component acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27465258)
GO_REF:0000107		 RGD
Ensembl		 PMID:27465258 GO_REF:0000107 NCBI chr14:9,129,775...9,188,244
Ensembl chr14:9,130,336...9,187,790 		JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISO (PMID:23652018) RGD PMID:23652018 NCBI chr20:12,127,570...12,165,165
Ensembl chr20:12,127,570...12,165,165 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:23325844) RGD PMID:23325844 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:5514340 (PMID:23637614)		 GO_Central
RGD		 PMID:23637614 GO_REF:0000033 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546 		JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (PMID:8215422) RGD PMID:8215422 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA		 (PMID:24289924)
GO_REF:0000107		 RGD
Ensembl		 PMID:24289924 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (PMID:19056892) RGD PMID:19056892 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:24270157) RGD PMID:24270157 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
protein localization to kinetochore involved in kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kntc1 kinetochore associated 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:32,769,020...32,839,617
Ensembl chr12:32,769,020...32,839,561 		JBrowse link
protein-DNA complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 IDA p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (PMID:10692439), (PMID:16603706) RGD PMID:10692439 PMID:16603706 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Hnf1b HNF1 homeobox B IMP RGD PMID:9545279 RGD:2312721 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 IMP RGD PMID:16135793 RGD:2303115 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905 		JBrowse link
G Tcf4 transcription factor 4 involved_in ISO (PMID:8978694) RGD PMID:8978694 NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425 		JBrowse link
protein-DNA complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:5474462 (PMID:23570311) RGD PMID:23570311 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf4 ring finger protein 4 involved_in ISO
ISS
IEA		 (PMID:20212317)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:20212317 GO_REF:0000024 GO_REF:0000107 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Senp6 SUMO specific peptidase 6 involved_in ISO
IBA		 (PMID:20212317)
GO_REF:0000033		 RGD
GO_Central		 PMID:20212317 GO_REF:0000033 NCBI chr 8:80,988,675...81,071,606
Ensembl chr 8:80,989,052...81,067,170 		JBrowse link
G Trappc12 trafficking protein particle complex subunit 12 involved_in ISO (PMID:25918224) RGD PMID:25918224 NCBI chr 6:45,321,496...45,386,967
Ensembl chr 6:45,321,497...45,386,952 		JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:8641287)		 GO_Central
RGD		 PMID:8641287 GO_REF:0000033 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
IEA
ISS		 (PMID:21921199)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21921199 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971 		JBrowse link
G Tbp TATA box binding protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
G Ubtfl2 upstream binding transcription factor like 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:16,073,983...16,075,170
Ensembl chr 8:16,073,983...16,075,170 		JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dr1 down-regulator of transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638 		JBrowse link
G ENSRNOG00000064241 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9841876)		 Ensembl
RGD		 PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IBA		 (PMID:7958899), (PMID:8626665)
GO_REF:0000033		 RGD
GO_Central		 PMID:7958899 PMID:8626665 GO_REF:0000033 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(PMID:3029109), (PMID:8413225), (PMID:9841876)		 Ensembl
GO_Central
UniProt
RGD		 PMID:3029109 PMID:8413225 PMID:9841876 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO
IBA		 (PMID:27007846)
GO_REF:0000033		 RGD
GO_Central		 PMID:27007846 GO_REF:0000033 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
MGI:3606185 (PMID:28893950)		 RGD PMID:27007846 PMID:28893950 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:27007846 GO_REF:0000002 GO_REF:0000033 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf11l1 TATA-box binding protein associated factor 11 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO
IBA		 (PMID:27007846)
GO_REF:0000033		 RGD
GO_Central		 PMID:27007846 GO_REF:0000033 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:27007846 GO_REF:0000033 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO
IBA		 (PMID:27007846)
GO_REF:0000033		 RGD
GO_Central		 PMID:27007846 GO_REF:0000033 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023 		JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:27007846 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:27007846), (PMID:9841876) RGD PMID:9841876 PMID:27007846 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 BDP1 general transcription factor IIIB subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:31,378,407...31,470,140
Ensembl chr 2:31,378,924...31,470,119 		JBrowse link
telomere-telomerase complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmbox1 homeobox containing 1 involved_in ISO (PMID:23685356) RGD PMID:23685356 NCBI chr15:39,067,805...39,200,633
Ensembl chr15:39,067,804...39,200,323 		JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1 general transcription factor IIIB subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278 		JBrowse link
G Brf2 BRF2 general transcription factor 3B subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (PMID:18319258) RGD PMID:18319258 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20537
    cellular process 19526
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          protein-containing complex organization 1813
            protein-DNA complex organization 188
              nucleosome organization + 101
              protein-DNA complex assembly + 167
              protein-DNA complex disassembly + 21
              protein-DNA complex remodeling + 1
paths to the root