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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to radiation
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Accession:GO:0071478 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
Comment:Note that 'radiation' refers to electromagnetic radiation of any wavelength.
Synonyms:exact_synonym: cellular response to electromagnetic radiation stimulus;   cellular response to radiation stimulus



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cellular response to radiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 IDA microwave RGD PMID:21241601 RGD:10403031 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
JBrowse link
G Irs1 insulin receptor substrate 1 IEP RGD PMID:17427956 RGD:10045897 NCBI chr 9:83,552,964...83,605,797
Ensembl chr 9:83,548,944...83,606,122
JBrowse link
G Mtch2 mitochondrial carrier 2 acts_upstream_of_or_within ISO MGI:2449949|MGI:5566664 (PMID:26219591) RGD PMID:26219591 NCBI chr 3:76,830,549...76,850,189
Ensembl chr 3:76,830,413...76,850,189
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
cellular response to gamma radiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16213212), (PMID:9925639) RGD PMID:9925639 PMID:16213212 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO
IEA
(PMID:9925639)
GO_REF:0000107
RGD
Ensembl
PMID:9925639 GO_REF:0000107 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Bcl2l1 Bcl2-like 1 acts_upstream_of_or_within ISO (PMID:15231831) RGD PMID:15231831 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479
Ensembl chr 1:141,253,523...141,303,479
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A acts_upstream_of_or_within ISO (PMID:10710310) RGD PMID:10710310 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in ISO (PMID:19057511) RGD PMID:19057511 NCBI chr 5:109,100,763...109,114,448
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO
IEA
MGI:2386905 (PMID:10710310)
GO_REF:0000107
RGD
Ensembl
PMID:10710310 GO_REF:0000107 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO
IEA
(PMID:23542032)
GO_REF:0000107
RGD
Ensembl
PMID:23542032 GO_REF:0000107 NCBI chr 8:59,989,885...59,995,532
Ensembl chr 8:51,093,441...51,099,157
JBrowse link
G Cyba cytochrome b-245 alpha chain IEP RGD PMID:18640264 RGD:2317861 NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within ISO (PMID:17515607) RGD PMID:17515607 NCBI chr 1:146,906,150...146,930,462
Ensembl chr 1:146,906,154...146,930,462
JBrowse link
G Egr1 early growth response 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19057511)
Ensembl
RGD
PMID:19057511 GO_REF:0000107 NCBI chr18:26,737,078...26,740,877
Ensembl chr18:26,462,981...26,466,766
JBrowse link
G Elk1 ETS transcription factor ELK1 IDA RGD PMID:17949253 RGD:7488908 NCBI chr  X:1,138,826...1,155,713
Ensembl chr  X:1,139,756...1,155,713
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23637614) RGD PMID:23637614 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G H2ax H2A.X variant histone IDA RGD PMID:17552875 RGD:8693710 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239
JBrowse link
G Hras HRas proto-oncogene, GTPase involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615
JBrowse link
G Hsf1 heat shock transcription factor 1 involved_in ISO
IEA
(PMID:26359349)
GO_REF:0000107
RGD
Ensembl
PMID:26359349 GO_REF:0000107 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 IEP RGD PMID:20470193 RGD:11354917 NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO
IEA
(PMID:24217620)
GO_REF:0000107
RGD
Ensembl
PMID:24217620 GO_REF:0000107 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO
IEA
(PMID:11836244)
GO_REF:0000107
RGD
Ensembl
PMID:11836244 GO_REF:0000107 NCBI chr 3:57,130,539...57,289,943
Ensembl chr 3:57,130,551...57,289,626
JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO
IEA
(PMID:16213212)
GO_REF:0000107
RGD
Ensembl
PMID:16213212 GO_REF:0000107 NCBI chr 7:55,176,558...55,201,757
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Mir21 microRNA 21 involved_in ISO (PMID:19826040) RGD PMID:19826040 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
G Nox4 NADPH oxidase 4 IEP RGD PMID:18640264 RGD:2317861 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
JBrowse link
G Rad51 RAD51 recombinase IEP RGD PMID:9885240 RGD:9831175 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rnf4 ring finger protein 4 IMP RGD PMID:22661230 RGD:9480235 NCBI chr14:80,625,864...80,647,138
Ensembl chr14:76,401,299...76,422,566
JBrowse link
G Rpl13a ribosomal protein L13A IEP RGD PMID:10483362 RGD:11036101 NCBI chr 1:95,609,374...95,612,557
Ensembl chr 1:95,609,370...95,620,463
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Tlk2 tousled-like kinase 2 involved_in ISO (PMID:12660173) RGD PMID:12660173 NCBI chr10:90,154,449...90,248,562
Ensembl chr10:90,156,813...90,248,561
JBrowse link
G Tmem109 transmembrane protein 109 acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(PMID:23542032)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000002
RGD
Ensembl
GO_Central
InterPro
PMID:23542032 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:207,519,628...207,530,245
Ensembl chr 1:207,519,624...207,530,215
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:16213212)
GO_REF:0000107
(PMID:10710310)
RGD
Ensembl
PMID:10710310 PMID:16213212 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA
(PMID:18045533)
GO_REF:0000107
RGD
Ensembl
PMID:18045533 GO_REF:0000107 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Tspyl5 TSPY-like 5 involved_in ISO (PMID:20079711) RGD PMID:20079711 NCBI chr 7:64,881,504...64,885,512
Ensembl chr 7:64,884,225...64,885,457
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:21639834) RGD PMID:21639834 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:26359349) RGD PMID:26359349 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in ISO
IEA
(PMID:26359349)
GO_REF:0000107
RGD
Ensembl
PMID:26359349 GO_REF:0000107 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO
IEA
ISS
(PMID:18280240)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18280240 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA
MGI:2180033 (PMID:15980864)
GO_REF:0000107
RGD
Ensembl
PMID:15980864 GO_REF:0000107 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 acts_upstream_of_or_within ISO
IEA
MGI:2158456 (PMID:17202487)
GO_REF:0000107
RGD
Ensembl
PMID:17202487 GO_REF:0000107 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:82,883,547...82,933,817
JBrowse link
G Slc24a2 solute carrier family 24 member 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:101,497,916...101,741,840
Ensembl chr 5:101,502,278...101,739,337
JBrowse link
G Slc24a4 solute carrier family 24 member 4 involved_in ISO
IEA
(PMID:28650316)
GO_REF:0000107
RGD
Ensembl
PMID:28650316 GO_REF:0000107 NCBI chr 6:121,279,590...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
cellular response to ionizing radiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase IMP RGD PMID:28007901 RGD:12879399 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in ISO
IEA
(PMID:14636569)
GO_REF:0000107
RGD
Ensembl
PMID:14636569 GO_REF:0000107 NCBI chr 6:24,369,021...24,788,416
Ensembl chr 6:24,369,022...24,833,951
JBrowse link
G Bard1 BRCA1 associated RING domain 1 involved_in ISO
IEA
(PMID:14636569)
GO_REF:0000107
RGD
Ensembl
PMID:14636569 GO_REF:0000107 NCBI chr 9:80,069,960...80,144,167
Ensembl chr 9:72,623,155...72,694,265
JBrowse link
G Bbc3 Bcl-2 binding component 3 acts_upstream_of_or_within ISO MGI:1096393|MGI:98834 (PMID:16286009) RGD PMID:16286009 NCBI chr 1:86,141,450...86,150,666
Ensembl chr 1:77,014,543...77,022,509
JBrowse link
G Blm BLM RecQ like helicase involved_in ISO
IEA
(PMID:23509288)
GO_REF:0000107
RGD
Ensembl
PMID:23509288 GO_REF:0000107 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in ISO (PMID:14636569) RGD PMID:14636569 NCBI chr10:86,917,693...86,978,012
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated involved_in ISO (PMID:14636569) RGD PMID:14636569 NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in ISO (PMID:14636569) RGD PMID:14636569 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A involved_in ISO (PMID:20160708) RGD PMID:20160708 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Clock clock circadian regulator involved_in IEA
ISO
GO_REF:0000107
(PMID:21659603)
Ensembl
RGD
PMID:21659603 GO_REF:0000107 NCBI chr14:32,262,747...32,346,872
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Ect2 epithelial cell transforming 2 involved_in ISO
IEA
(PMID:21373644)
GO_REF:0000107
RGD
Ensembl
PMID:21373644 GO_REF:0000107 NCBI chr 2:109,975,813...110,037,911
Ensembl chr 2:109,975,813...110,037,911
JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in ISO
IEA
(PMID:8168075)
GO_REF:0000107
RGD
Ensembl
PMID:8168075 GO_REF:0000107 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799
JBrowse link
G Fbxo4 F-box protein 4 acts_upstream_of_or_within ISO
IEA
(PMID:21911473)
GO_REF:0000107
RGD
Ensembl
PMID:21911473 GO_REF:0000107 NCBI chr 2:54,902,394...54,915,388
Ensembl chr 2:53,174,798...53,187,792
JBrowse link
G Fignl1 fidgetin-like 1 involved_in ISO
ISS
(PMID:23754376)
GO_REF:0000024
RGD
UniProt
PMID:23754376 GO_REF:0000024 NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455
JBrowse link
G Gadd45a growth arrest and DNA-damage-inducible, alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:20160708)
Ensembl
RGD
PMID:20160708 GO_REF:0000107 NCBI chr 4:97,484,497...97,486,799
Ensembl chr 4:96,154,789...96,157,115
JBrowse link
G Grb2 growth factor receptor bound protein 2 involved_in ISO
IEA
(PMID:20160708)
GO_REF:0000107
RGD
Ensembl
PMID:20160708 GO_REF:0000107 NCBI chr10:100,881,404...100,949,193
Ensembl chr10:100,869,718...100,949,309
JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in ISO
IEA
(PMID:21659603)
GO_REF:0000107
RGD
Ensembl
PMID:21659603 GO_REF:0000107 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO
IEA
(PMID:20687897)
GO_REF:0000107
RGD
Ensembl
PMID:20687897 GO_REF:0000107 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ints7 integrator complex subunit 7 involved_in ISO (PMID:21659603) RGD PMID:21659603 NCBI chr13:103,155,123...103,207,953
Ensembl chr13:103,155,090...103,208,592
JBrowse link
G Itgb1 integrin subunit beta 1 IEP RGD PMID:19714308 RGD:2312872 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO
IEA
(PMID:17916808)
GO_REF:0000107
RGD
Ensembl
PMID:17916808 GO_REF:0000107 NCBI chr 3:45,046,295...45,170,532
Ensembl chr 3:45,048,044...45,121,671
JBrowse link
G Kdm4d lysine demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) RGD PMID:24550317 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G Lig4 DNA ligase 4 involved_in ISO UniProtKB:G5EGA3 (PMID:29463814) RGD PMID:29463814 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in ISO
IEA
(PMID:20160708)
GO_REF:0000107
RGD
Ensembl
PMID:20160708 GO_REF:0000107 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mfn2 mitofusin 2 IEP RGD PMID:26415228 RGD:13204741 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase IEP RGD PMID:9780001 RGD:2316946 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
G Mir21 microRNA 21 involved_in ISO (PMID:22836756) RGD PMID:22836756 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IEP RGD PMID:27681750 RGD:13781886 NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100
JBrowse link
G Net1 neuroepithelial cell transforming 1 involved_in ISO (PMID:21373644) RGD PMID:21373644 NCBI chr17:66,341,251...66,370,445
Ensembl chr17:66,340,728...66,370,441
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in ISO
IEA
(PMID:21659603)
GO_REF:0000107
RGD
Ensembl
PMID:21659603 GO_REF:0000107 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IEA
(PMID:14636569), (PMID:23509288), (PMID:23754376)
GO_REF:0000107
RGD
Ensembl
PMID:14636569 PMID:23509288 PMID:23754376 GO_REF:0000107 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO
IEA
(PMID:23754376)
GO_REF:0000107
RGD
Ensembl
PMID:23754376 GO_REF:0000107 NCBI chr 4:159,759,454...159,772,473
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in ISO
IBA
(PMID:21659603)
GO_REF:0000033
RGD
GO_Central
PMID:21659603 GO_REF:0000033 NCBI chr 1:210,917,970...210,983,038
Ensembl chr 1:201,487,136...201,553,608
JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISO
IEA
(PMID:21659603)
GO_REF:0000002
RGD
InterPro
PMID:21659603 GO_REF:0000002 NCBI chr 4:161,634,047...161,639,437
Ensembl chr 4:161,634,048...161,639,371
JBrowse link
G Rhob ras homolog family member B involved_in ISO
IEA
ISS
(PMID:21373644)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21373644 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:37,083,030...37,085,204
Ensembl chr 6:31,363,548...31,366,108
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Sirt1 sirtuin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:17612497)
Ensembl
RGD
PMID:17612497 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:2181667|MGI:98834 (PMID:16286009) RGD PMID:16286009 NCBI chr11:99,686,934...99,690,349
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in ISO (PMID:23509288), (PMID:23754376) RGD PMID:23509288 PMID:23754376 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600
JBrowse link
G Swi5 SWI5 homologous recombination repair protein involved_in ISS
ISO
GO_REF:0000024
(PMID:23754376)
UniProt
RGD
PMID:23754376 GO_REF:0000024 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805
JBrowse link
G Tank TRAF family member-associated NFKB activator involved_in ISO
IEA
(PMID:25861989)
GO_REF:0000107
RGD
Ensembl
PMID:25861989 GO_REF:0000107 NCBI chr 3:46,114,230...46,190,270
Ensembl chr 3:46,114,274...46,190,264
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IEP
IEA
ISO
GO_REF:0000107
MGI:3513111 (PMID:17916808)
Ensembl
RGD
PMID:17916808 PMID:25600523 GO_REF:0000107, RGD:11073671 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnf tumor necrosis factor involved_in ISO
IEA
(PMID:22836756)
GO_REF:0000107
RGD
Ensembl
PMID:22836756 GO_REF:0000107 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tnks1bp1 tankyrase 1 binding protein 1 involved_in ISO
IEA
IBA
(PMID:25749521)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:25749521 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:70,135,335...70,160,071
Ensembl chr 3:70,137,837...70,160,038
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:20160708)
GO_REF:0000107
(PMID:16213212)
MGI:1096393|MGI:2181667 (PMID:16286009)
RGD
Ensembl
PMID:16213212 PMID:16286009 PMID:20160708 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA
(PMID:17234588)
GO_REF:0000107
RGD
Ensembl
PMID:17234588 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Gpr52 G protein-coupled receptor 52 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:72,800,265...72,804,989
Ensembl chr13:72,800,127...72,806,180
JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEP RGD PMID:17475674 RGD:9068879 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 IEP RGD PMID:24202060 RGD:12910722 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in IBA
ISO
GO_REF:0000033
(PMID:31607531)
GO_Central
RGD
PMID:31607531 GO_REF:0000033 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
(PMID:21052544)
GO_Central
Ensembl
RGD
PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO
IEA
(PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO
IEA
MGI:2386674 (PMID:10725384)
GO_REF:0000107
RGD
Ensembl
PMID:10725384 GO_REF:0000107 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:19896109)
GO_REF:0000107
(PMID:19861548)
MGI:4421441 (PMID:19966281), (PMID:21052544)
RGD
Ensembl
PMID:19861548 PMID:19896109 PMID:19966281 PMID:21052544 GO_REF:0000107 NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in ISO
ISS
(PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:19424603 GO_REF:0000024 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO
IEA
(PMID:9925639)
GO_REF:0000107
RGD
Ensembl
PMID:9925639 GO_REF:0000107 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Aurkb aurora kinase B involved_in ISO
IEA
ISS
(PMID:20959462)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20959462 GO_REF:0000024 GO_REF:0000107 NCBI chr10:53,744,290...53,750,831
Ensembl chr10:53,745,142...53,750,837
JBrowse link
G Bak1 BCL2-antagonist/killer 1 involved_in ISO
IEA
(PMID:15901672)
GO_REF:0000107
RGD
Ensembl
PMID:15901672 GO_REF:0000107 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA
MGI:98834 (PMID:14963330)
GO_REF:0000107
RGD
Ensembl
PMID:14963330 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO (PMID:23629966) RGD PMID:23629966 NCBI chr 3:105,499,534...105,520,159
Ensembl chr 3:105,499,538...105,520,145
JBrowse link
G Casp9 caspase 9 involved_in ISO
IEA
(PMID:15657060)
GO_REF:0000107
RGD
Ensembl
PMID:15657060 GO_REF:0000107 Ensembl chr 5:154,109,046...154,126,626 JBrowse link
G Casp9_v1 caspase-9-carboxyl-terminal divergent involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Cops9 COP9 signalosome subunit 9 involved_in ISO (PMID:26456823) RGD PMID:26456823 NCBI chr 9:93,209,843...93,214,774
Ensembl chr 9:93,209,843...93,213,317
JBrowse link
G Crebbp CREB binding protein involved_in ISO
ISS
(PMID:24939902)
GO_REF:0000024
RGD
UniProt
PMID:24939902 GO_REF:0000024 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr16:83,086,688...83,124,503
Ensembl chr16:76,384,546...76,422,330
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 3:97,640,923...97,667,617
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within ISO (PMID:17515607) RGD PMID:17515607 NCBI chr 1:146,906,150...146,930,462
Ensembl chr 1:146,906,154...146,930,462
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
IEA
ISS
(PMID:27940037)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27940037 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (PMID:12176355) RGD PMID:12176355 NCBI chr 3:105,356,261...105,441,630
Ensembl chr 3:105,356,261...105,441,630
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12176355)
UniProt
Ensembl
RGD
PMID:12176355 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:24939902) RGD PMID:24939902 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO UniProtKB:Q15554 (PMID:17055345), (PMID:32034146) RGD PMID:17055345 PMID:32034146 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 2:170,149,706...170,311,536
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO
IEA
(PMID:18026119)
GO_REF:0000107
RGD
Ensembl
PMID:18026119 GO_REF:0000107 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO
IEA
(PMID:24217620)
GO_REF:0000107
RGD
Ensembl
PMID:24217620 GO_REF:0000107 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Mapk13 mitogen activated protein kinase 13 involved_in ISO
IEA
(PMID:9218798)
GO_REF:0000107
RGD
Ensembl
PMID:9218798 GO_REF:0000107 NCBI chr20:6,835,277...6,845,500
Ensembl chr20:6,835,320...6,844,222
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IMP RGD PMID:8875991 RGD:2304246 NCBI chr10:34,670,750...34,711,972
Ensembl chr10:34,169,675...34,210,178
JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO
IEA
(PMID:28297716)
GO_REF:0000107
RGD
Ensembl
PMID:28297716 GO_REF:0000107 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G N4bp1 Nedd4 binding protein 1 involved_in ISO
IEA
(PMID:17592138)
GO_REF:0000107
RGD
Ensembl
PMID:17592138 GO_REF:0000107 NCBI chr19:20,222,811...20,273,570
Ensembl chr19:20,222,776...20,273,570
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:17996703)
GO_REF:0000107
RGD
Ensembl
PMID:17996703 GO_REF:0000107 NCBI chr 8:82,264,751...82,349,642
Ensembl chr 8:73,383,695...73,468,951
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 acts_upstream_of_or_within ISO MGI:97583 (PMID:17242187) RGD PMID:17242187 NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO
IEA
(PMID:20959462)
GO_REF:0000107
RGD
Ensembl
PMID:20959462 GO_REF:0000107 NCBI chr 5:166,820,150...166,831,949
Ensembl chr 5:166,820,161...166,831,949
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
IEA
(PMID:24289924)
GO_REF:0000107
RGD
Ensembl
PMID:24289924 GO_REF:0000107 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO MGI:5293435 (PMID:21715333) RGD PMID:21715333 NCBI chr15:40,022,873...40,034,014
Ensembl chr15:40,023,002...40,034,014
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IEP
IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24939902)
Ensembl
UniProt
RGD
PMID:24939902 PMID:8905661 GO_REF:0000024 GO_REF:0000107, RGD:10448977 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within ISO MGI:103296|MGI:2149414 (PMID:17242187) RGD PMID:17242187 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24939902)
UniProt
Ensembl
RGD
PMID:24939902 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Polk DNA polymerase kappa involved_in ISO
IEA
(PMID:28297716)
GO_REF:0000107
RGD
Ensembl
PMID:28297716 GO_REF:0000107 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IEP RGD PMID:9811446 RGD:9999409 NCBI chr 1:105,136,521...105,139,596
Ensembl chr 1:96,000,058...96,003,171
JBrowse link
G Prkcd protein kinase C, delta involved_in ISO
IEA
ISS
(PMID:17303575)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17303575 GO_REF:0000024 GO_REF:0000107 NCBI chr16:5,769,217...5,799,380
Ensembl chr16:5,769,215...5,799,352
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:17925408 RGD:10044023 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K involved_in ISO (PMID:16849327) RGD PMID:16849327 NCBI chr 1:16,738,896...17,236,687
Ensembl chr 1:16,850,576...17,103,605
JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:22118460) RGD PMID:22118460 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:112,990,835...113,001,051
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19358743)
UniProt
Ensembl
RGD
PMID:19358743 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:83,630,037...83,748,690
Ensembl chr 9:83,630,063...83,748,689
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISO (PMID:21659603) RGD PMID:21659603 NCBI chr 4:161,634,047...161,639,437
Ensembl chr 4:161,634,048...161,639,371
JBrowse link
G Rnf168 ring finger protein 168 acts_upstream_of_or_within ISO (PMID:24217620) RGD PMID:24217620 NCBI chr11:81,991,352...82,013,306
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO
IEA
(PMID:18026119)
GO_REF:0000107
RGD
Ensembl
PMID:18026119 GO_REF:0000107 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA
ISO
GO_REF:0000107
(PMID:27906959)
Ensembl
RGD
PMID:27906959 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140
JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in ISO
IEA
(PMID:17303575)
GO_REF:0000107
RGD
Ensembl
PMID:17303575 GO_REF:0000107 NCBI chr 1:159,892,946...159,896,789
Ensembl chr 1:159,892,859...159,896,794
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr  X:70,680,901...70,756,535
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:19,237,638...19,248,151
Ensembl chr16:19,238,487...19,248,087
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:16213212), (PMID:23629966)
GO_REF:0000107
(PMID:23629966)
MGI:99702 (PMID:14963330)
RGD
Ensembl
PMID:14963330 PMID:16213212 PMID:23629966 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 acts_upstream_of_or_within ISO
IEA
(PMID:11557757)
GO_REF:0000107
RGD
Ensembl
PMID:11557757 GO_REF:0000107 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA
(PMID:20511593)
GO_REF:0000107
RGD
Ensembl
PMID:20511593 GO_REF:0000107 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in ISO
IEA
(PMID:15735003)
GO_REF:0000107
RGD
Ensembl
PMID:15735003 GO_REF:0000107 NCBI chr12:41,267,534...41,270,053
Ensembl chr12:41,267,549...41,270,042
JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 8:49,325,766...49,386,229
Ensembl chr 8:49,325,867...49,386,229
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO
IEA
(PMID:18026119)
GO_REF:0000107
RGD
Ensembl
PMID:18026119 GO_REF:0000107 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO
IEA
(PMID:24657165)
GO_REF:0000107
RGD
Ensembl
PMID:24657165 GO_REF:0000107 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 involved_in ISO (PMID:19800881) RGD PMID:19800881 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Gdf1 growth differentiation factor 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,097,314...19,112,519
JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20876573)
UniProt
Ensembl
RGD
PMID:20876573 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:147,686,913...147,803,808
Ensembl chr 2:147,722,086...147,803,792
JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in ISO (PMID:31380578) RGD PMID:31380578 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:31380578)
Ensembl
UniProt
RGD
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in ISO
IEA
ISS
(PMID:31380578)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:31380578)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn5 opsin 5 involved_in ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISS
ISO
GO_REF:0000024
(PMID:23220213)
UniProt
RGD
PMID:23220213 GO_REF:0000024 NCBI chr 2:164,727,803...164,740,168
Ensembl chr 2:164,727,779...164,740,221
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31380578)
UniProt
Ensembl
RGD
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A involved_in ISO (PMID:25329316) RGD PMID:25329316 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Crip1 cysteine rich protein 1 involved_in ISO
ISS
(PMID:20415737) RGD PMID:20415737 PMID:20415737 RGD:8553326 NCBI chr 6:132,226,746...132,234,620
Ensembl chr 6:132,226,746...132,234,620
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21699545)
UniProt
Ensembl
RGD
PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
ISS
IEA
(PMID:21699545)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:21699545) RGD PMID:21699545 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647
JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:35857590)
(PMID:32289254)
UniProt
Ensembl
RGD
PMID:32289254 PMID:35857590 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:57,130,539...57,289,943
Ensembl chr 3:57,130,551...57,289,626
JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO
IEA
(PMID:35857590)
GO_REF:0000107
RGD
Ensembl
PMID:35857590 GO_REF:0000107 NCBI chr 7:120,218,471...120,225,488
Ensembl chr 7:120,218,478...120,225,395
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
(PMID:35857590)
Ensembl
RGD
PMID:35857590 GO_REF:0000107 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO
IEA
(PMID:22355679)
GO_REF:0000107
RGD
Ensembl
PMID:22355679 GO_REF:0000107 NCBI chr10:46,167,158...46,170,176
Ensembl chr10:46,167,217...46,170,155
JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISO
ISS
IEA
(PMID:20876573)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:20876573 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:147,686,913...147,803,808
Ensembl chr 2:147,722,086...147,803,792
JBrowse link
G Nlrp1a NLR family, pyrin domain containing 1A involved_in ISO (PMID:30096351) RGD PMID:30096351 NCBI chr10:55,778,560...55,833,639
Ensembl chr10:55,778,560...55,825,180
JBrowse link
G Rpl13a ribosomal protein L13A IEP RGD PMID:10483362 RGD:11036101 NCBI chr 1:95,609,374...95,612,557
Ensembl chr 1:95,609,370...95,620,463
JBrowse link
G Rpl35 ribosomal protein L35 IEP RGD PMID:10483362 RGD:11036101 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:25329316) RGD PMID:25329316 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within ISO
IEA
MGI:98834 (PMID:24014029)
GO_REF:0000107
RGD
Ensembl
PMID:24014029 GO_REF:0000107 NCBI chr 8:36,494,289...36,510,653
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:14558917 RGD:2317408 NCBI chr 7:55,176,558...55,201,757
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within ISO (PMID:21159655) RGD PMID:21159655 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568
JBrowse link
G Polh DNA polymerase eta acts_upstream_of_or_within ISO
IEA
MGI:1347081|MGI:3614412 (PMID:17114294)
GO_REF:0000107
RGD
Ensembl
PMID:17114294 GO_REF:0000107 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Poli DNA polymerase iota acts_upstream_of_or_within ISO MGI:1891457|MGI:3055735 (PMID:17114294) RGD PMID:17114294 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA
MGI:108090 (PMID:24014029)
GO_REF:0000107
RGD
Ensembl
PMID:24014029 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
cellular response to X-ray term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Ccnd2 cyclin D2 acts_upstream_of_or_within ISO MGI:2180642 (PMID:23714078) RGD PMID:23714078 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495
JBrowse link
G Dbn1 drebrin 1 IEP RGD PMID:23578130 RGD:10398817 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984
JBrowse link
G Dnm2 dynamin 2 IEP RGD PMID:15994918 RGD:9685147 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:17090718 RGD:11041722 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
JBrowse link
G Kat5 lysine acetyltransferase 5 IEP RGD PMID:15985650 RGD:2316135 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Lcn2 lipocalin 2 IEP RGD PMID:23331620 RGD:126790570 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA
(PMID:17468178)
GO_REF:0000107
RGD
Ensembl
PMID:17468178 GO_REF:0000107 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
JBrowse link
G Prap1 proline-rich acidic protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:32629119)
UniProt
Ensembl
RGD
PMID:32629119 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:194,883,078...194,886,874
Ensembl chr 1:194,883,078...194,886,872
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19778523)
Ensembl
RGD
PMID:19778523 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO
IEA
(PMID:19778523)
GO_REF:0000107
RGD
Ensembl
PMID:19778523 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 IEP RGD PMID:21915754 RGD:9586753 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 IDA RGD PMID:11966321 RGD:727219 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 IDA RGD PMID:11175667 RGD:2317102 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnb5 G protein subunit beta 5 acts_upstream_of_or_within ISO
IEA
(PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 NCBI chr 8:76,076,120...76,105,069
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Rgs9 regulator of G-protein signaling 9 acts_upstream_of_or_within ISO
IEA
(PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS
(PMID:1730053)
GO_REF:0000024
RGD
UniProt
PMID:1730053 GO_REF:0000024 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA
MGI:3052754 (PMID:23993650)
GO_REF:0000107
RGD
Ensembl
PMID:23993650 GO_REF:0000107 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (PMID:18768681) RGD PMID:18768681 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO
IEA
(PMID:22043319)
GO_REF:0000107
RGD
Ensembl
PMID:22043319 GO_REF:0000107 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
regulation of cellular response to X-ray term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA
(PMID:19735555)
GO_REF:0000107
RGD
Ensembl
PMID:19735555 GO_REF:0000107 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) RGD PMID:12080348 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645
JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO
IEA
MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178)
GO_REF:0000107
RGD
Ensembl
PMID:15365173 PMID:15365178 GO_REF:0000107 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000002
GO_REF:0000107
(PMID:15946941)
UniProt
InterPro
Ensembl
RGD
PMID:15946941 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 involved_in ISO
IEA
(PMID:20855601)
GO_REF:0000107
RGD
Ensembl
PMID:20855601 GO_REF:0000107 NCBI chr 3:147,282,461...147,295,870
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:117,287,481...117,326,688
Ensembl chr  X:117,287,484...117,326,688
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:14751237), (PMID:22334663) RGD PMID:14751237 PMID:22334663 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO
IEA
(PMID:14751237), (PMID:22334663)
GO_REF:0000107
RGD
Ensembl
PMID:14751237 PMID:22334663 GO_REF:0000107 NCBI chr 3:97,640,923...97,667,617
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:88,099,308...88,135,966
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G H2ac25 H2A clustered histone 25 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO
IEA
(PMID:20855601)
GO_REF:0000107
RGD
Ensembl
PMID:20855601 GO_REF:0000107 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO
IEA
(PMID:18292087)
GO_REF:0000107
RGD
Ensembl
PMID:18292087 GO_REF:0000107 NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) RGD PMID:22431748 NCBI chr19:23,313,563...23,320,702
Ensembl chr19:23,314,797...23,320,695
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) RGD PMID:22431748 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA
(PMID:20670893)
GO_REF:0000107
RGD
Ensembl
PMID:20670893 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in ISO
IEA
(PMID:8077226)
GO_REF:0000107
(PMID:22431748)
RGD
Ensembl
PMID:8077226 PMID:22431748 GO_REF:0000107 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    response to stimulus 11082
      response to abiotic stimulus 1619
        response to radiation 540
          cellular response to radiation 201
            cellular response to ionizing radiation + 88
            cellular response to light stimulus + 125
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular response to stimulus 8977
        cellular response to environmental stimulus 458
          cellular response to abiotic stimulus 458
            cellular response to radiation 201
              cellular response to ionizing radiation + 88
              cellular response to light stimulus + 125
paths to the root