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ONTOLOGY REPORT - ANNOTATIONS

Term:catalytic step 2 spliceosome
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Accession:GO:0071013 term browser browse the term
Definition:A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
Synonyms:narrow_synonym: mammalian spliceosomal complex C;   mammalian spliceosomal complex C1;   yeast spliceosomal complex A2-2


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catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G AABR07048397.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:246,755,907...246,757,455 JBrowse link
G AC126899.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr19:40,146,975...40,147,500 JBrowse link
G Alyref Aly/REF export factor part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000104
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11991638 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:193,381,000...193,388,881
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Cactin cactin, spliceosome C complex subunit part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Cdc40 cell division cycle 40 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000002 		RGD
GO_Central
Ensembl
InterPro		 PMID:11991638 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr20:44,273,080...44,325,605
Ensembl chr20:44,273,089...44,325,358 		JBrowse link
G Cdc5l cell division cycle 5-like part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
Ensembl chr 2:11,305,424...11,316,325 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein part_of ISO
IBA 		(PMID:11991638), (PMID:22961380)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 PMID:22961380 GO_REF:0000033 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228 		JBrowse link
G Cwc27 CWC27 spliceosome associated cyclophilin part_of ISO
IEA
IBA 		(PMID:11991638)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:35,764,674...35,975,908
Ensembl chr 2:35,764,686...35,975,872 		JBrowse link
G Ddx23 DEAD-box helicase 23 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949 		JBrowse link
G Ddx41 DEAD-box helicase 41 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr17:9,102,926...9,108,415
Ensembl chr17:9,103,010...9,108,415 		JBrowse link
G Ddx5 DEAD-box helicase 5 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dhx35 DEAH-box helicase 35 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:147,450,178...147,507,473
Ensembl chr 3:147,450,163...147,507,451 		JBrowse link
G Dhx38 DEAH-box helicase 38 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr19:37,512,893...37,530,135
Ensembl chr19:37,512,891...37,530,140 		JBrowse link
G Dhx8 DEAH-box helicase 8 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 part_of ISO
IBA
IEA 		(PMID:11991638), (PMID:22961380)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 PMID:22961380 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G ENSRNOG00000063333 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G ENSRNOG00000063783 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:167,764,388...167,766,354 JBrowse link
G ENSRNOG00000063892 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:26,757,597...26,758,813 JBrowse link
G ENSRNOG00000068896 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:58,714,468...58,715,548 JBrowse link
G ENSRNOG00000069815 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:30,933,948...30,935,941 JBrowse link
G Ess2 ess-2 splicing factor homolog part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr11:83,075,893...83,085,849
Ensembl chr11:83,075,925...83,084,846 		JBrowse link
G Frg1 FSHD region gene 1 part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr16:50,925,783...50,946,661
Ensembl chr16:50,925,803...50,946,661 		JBrowse link
G Frg1-ps1 FSHD region gene 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:30,269,021...30,269,933
Ensembl chr12:30,269,096...30,269,872 		JBrowse link
G Gpatch1 G patch domain containing 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 1:87,925,606...87,974,544
Ensembl chr 1:87,925,618...87,974,544 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa1-ps20 heterogeneous nuclear ribonucleoprotein A1, pseudogene 20 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:34,673,369...34,674,656
Ensembl chr 3:34,673,373...34,674,332 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:148,542,999...148,574,888
Ensembl chr 5:148,543,044...148,574,867 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Isy1 ISY1 splicing factor homolog part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like part_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:58,668,326...58,670,222
Ensembl chr 5:58,668,327...58,670,220 		JBrowse link
G LOC100911361 heterogeneous nuclear ribonucleoprotein A3-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:78,217,733...78,219,237
Ensembl chr10:78,217,761...78,218,895 		JBrowse link
G LOC108350566 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:118,679,416...118,680,923
Ensembl chr 3:118,679,472...118,680,908
Ensembl chr 3:118,679,472...118,680,908 		JBrowse link
G LOC108350623 small nuclear ribonucleoprotein F-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:155,116,497...155,116,945
Ensembl chr 3:155,116,174...155,116,769 		JBrowse link
G LOC108352309 small nuclear ribonucleoprotein F-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:33,533,614...33,533,927
Ensembl chr11:33,533,512...33,533,871 		JBrowse link
G LOC120096281 heterogeneous nuclear ribonucleoprotein A3-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:65,940,732...65,942,250
Ensembl chr13:65,941,100...65,942,227 		JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087 		JBrowse link
G LOC134479414 RING-type E3 ubiquitin-protein ligase PPIL2-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:105,755,446...105,757,206
Ensembl chr 6:100,024,246...100,025,811 		JBrowse link
G LOC134479418 pre-mRNA-splicing factor CWC22 homolog part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC134479419 pre-mRNA-splicing factor CWC22 homolog part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Magoh mago homolog, exon junction complex subunit part_of ISO
IEA
IBA 		(PMID:11991638)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Plrg1 pleiotropic regulator 1 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522 		JBrowse link
G Pnn pinin, desmosome associated protein part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889 		JBrowse link
G Ppie peptidylprolyl isomerase E part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354 		JBrowse link
G Ppil2 peptidylprolyl isomerase like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:97,401,944...97,424,581
Ensembl chr11:83,897,764...83,922,144 		JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886 		JBrowse link
G Ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 2:35,337,301...35,360,661
Ensembl chr 2:35,335,962...35,360,460 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 part_of ISO
IEA
IBA 		(PMID:11991638)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Raly RALY heterogeneous nuclear ribonucleoprotein part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 3:143,306,039...143,370,542
Ensembl chr 3:143,306,300...143,370,539 		JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Rbm44 RNA binding motif protein 44 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:91,731,153...91,756,783
Ensembl chr 9:91,731,115...91,756,772 		JBrowse link
G Rbm8a RNA binding motif protein 8A part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959 		JBrowse link
G Rbmx RNA binding motif protein, X-linked part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rbmxl1 Rbmx like 1 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr14:83,254,971...83,275,720
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245 		JBrowse link
G Slu7 SLU7 homolog, splicing factor part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IBA 		(PMID:11991638)
GO_REF:0000033 		RGD
GO_Central		 PMID:11991638 GO_REF:0000033 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634 		JBrowse link
G Snrpn-ps4 small nuclear ribonucleoprotein polypeptide N, pseudogene 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:93,649,679...93,650,898
Ensembl chr 5:93,650,062...93,650,771 		JBrowse link
G Snrpnl2 small nuclear ribonucleoprotein polypeptide N like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:73,193,647...73,194,285
Ensembl chr15:73,193,647...73,195,245 		JBrowse link
G Snw1 SNW domain containing 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Tfip11 tuftelin interacting protein 11 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr12:44,299,619...44,311,851
Ensembl chr12:44,299,622...44,311,855 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr20:9,742,904...9,753,840
Ensembl chr20:9,742,905...9,753,832 		JBrowse link
G Wdr83 WD repeat domain 83 part_of ISO
IEA
IBA 		(PMID:11991638)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr19:23,076,948...23,082,569
Ensembl chr19:23,077,010...23,082,563 		JBrowse link
G Xab2 XPA binding protein 2 part_of ISO
IEA 		(PMID:11991638)
GO_REF:0000107 		RGD
Ensembl		 PMID:11991638 GO_REF:0000107 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 part_of ISO
IBA
IEA 		(PMID:11991638)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11991638 GO_REF:0000033 GO_REF:0000107 NCBI chr12:32,869,170...32,892,707
Ensembl chr12:32,869,310...32,891,325 		JBrowse link
U2-type catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius intron-binding spliceosomal factor part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 2:193,381,000...193,388,881
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Bud31 BUD31 homolog part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509 		JBrowse link
G Cdc40 cell division cycle 40 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr20:44,273,080...44,325,605
Ensembl chr20:44,273,089...44,325,358 		JBrowse link
G Cdc5l cell division cycle 5-like part_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28076346) 		UniProt
Ensembl
RGD		 PMID:28076346 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:28076346) 		UniProt
GO_Central
RGD		 PMID:28076346 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISO
ISS 		(PMID:28076346)
GO_REF:0000024 		RGD
UniProt		 PMID:28076346 GO_REF:0000024 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
Ensembl chr 2:11,305,424...11,316,325 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228 		JBrowse link
G Dhx8 DEAH-box helicase 8 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO
IEA
IBA 		(PMID:28076346)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28076346 GO_REF:0000033 GO_REF:0000107 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079 		JBrowse link
G Plrg1 pleiotropic regulator 1 part_of ISO
IEA
ISS 		(PMID:28076346)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28076346 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522 		JBrowse link
G Ppie peptidylprolyl isomerase E part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO
IEA
IBA 		(PMID:28076346)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28076346 GO_REF:0000033 GO_REF:0000107 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO
IEA
ISS 		(PMID:28076346)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28076346 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO
IEA 		(PMID:28076346)
GO_REF:0000107 		RGD
Ensembl		 PMID:28076346 GO_REF:0000107 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snw1 SNW domain containing 1 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor part_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28076346) 		UniProt
Ensembl
RGD		 PMID:28076346 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414 		JBrowse link
G Xab2 XPA binding protein 2 part_of ISS
IBA
IEA
ISO 		GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:28076346) 		UniProt
GO_Central
Ensembl
RGD		 PMID:28076346 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    protein-containing complex 6834
      catalytic complex 1961
        catalytic step 2 spliceosome 112
          U12-type catalytic step 2 spliceosome 0
          U2-type catalytic step 2 spliceosome 30
Path 2
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      organelle 14207
        membrane-bounded organelle 12758
          intracellular membrane-bounded organelle 12185
            nucleus 7685
              nuclear protein-containing complex 1347
                spliceosomal complex 236
                  catalytic step 2 spliceosome 112
                    U12-type catalytic step 2 spliceosome 0
                    U2-type catalytic step 2 spliceosome 30
paths to the root