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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of regulatory ncRNA processing
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Accession:GO:0070920 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of regulatory non-coding RNA processing.
Synonyms:exact_synonym: regulation of gene silencing by RNA, production of guide RNA;   regulation of gene silencing by RNA, production of small RNA
 narrow_synonym: regulation of production of small RNA involved in gene silencing by RNA



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regulation of regulatory ncRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:61,575,447...61,594,393 JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:135,527,710...135,532,826 JBrowse link
negative regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1a HNF1 homeobox A IMP RGD PMID:23674172 RGD:150540303 NCBI chr12:47,299,171...47,333,457 JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1890508 (PMID:21522133)
Ensembl
RGD
PMID:21522133 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300 JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 involved_in ISO (PMID:28431233) RGD PMID:28431233 NCBI chr 7:973,415...977,742 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033|MGI:98834 (PMID:21522133) RGD PMID:21522133 NCBI chr 5:139,912,395...139,945,532 JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
IBA
ISS
(PMID:23063121)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23063121 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:130,605,540...130,610,134 JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:21247876) RGD PMID:21247876 NCBI chr 5:146,227,119...146,244,122 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769 JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO UniProtKB:P40763 (PMID:31507089) RGD PMID:31507089 NCBI chr 4:5,889,999...5,894,575 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769 JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:156,932,481...156,995,981 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA
(PMID:31507089)
GO_REF:0000107
RGD
Ensembl
PMID:31507089 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513 JBrowse link
positive regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ripk1 receptor interacting serine/threonine kinase 1 acts_upstream_of ISO (PMID:26020802) RGD PMID:26020802 NCBI chr17:31,044,983...31,077,167 JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgcr8 DGCR8 microprocessor complex subunit involved_in ISO (PMID:15574589), (PMID:32926445) RGD PMID:15574589 PMID:32926445 NCBI chr11:96,208,959...96,241,560 JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:32926445)
UniProt
RGD
PMID:32926445 GO_REF:0000024 NCBI chr 1:256,513,418...256,554,549 JBrowse link
positive regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA
(PMID:18548003)
GO_REF:0000107
RGD
Ensembl
PMID:18548003 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145 JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:90,324,312...90,340,627 JBrowse link
regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000002
MGI:2135565|MGI:5645258 (PMID:27159388)
InterPro
RGD
PMID:27159388 GO_REF:0000002 NCBI chr 7:135,527,710...135,532,826 JBrowse link
regulation of siRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:135,527,710...135,532,826 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      regulation of cellular process 13013
        regulation of metabolic process 6834
          regulation of primary metabolic process 5693
            regulation of regulatory ncRNA processing 17
              regulation of miRNA processing + 16
              regulation of siRNA processing + 1
Path 2
Term Annotations click to browse term
  biological_process 20534
    biological regulation 13821
      regulation of biological process 13375
        regulation of cellular process 13013
          regulation of metabolic process 6834
            regulation of biosynthetic process 5630
              regulation of macromolecule biosynthetic process 5425
                regulation of gene expression 5308
                  negative regulation of gene expression 1390
                    regulatory ncRNA-mediated gene silencing 337
                      regulation of gene silencing by regulatory ncRNA 36
                        regulation of regulatory ncRNA processing 17
                          regulation of miRNA processing + 16
                          regulation of siRNA processing + 1
paths to the root