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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex organization
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Accession:GO:0070193 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synaptonemal complex. A synaptonemal complex is a proteinaceous scaffold formed between homologous chromosomes during meiosis.
Synonyms:exact_synonym: synaptonemal complex organisation
 never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe


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synaptonemal complex organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syce1 synaptonemal complex central element protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (PMID:12556476), (PMID:17488778) RGD PMID:12556476 PMID:17488778 NCBI chr10:36,749,365...36,764,335
Ensembl chr10:36,248,438...36,264,665 		JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:109542 (PMID:22164254)		 GO_Central
RGD		 PMID:22164254 GO_REF:0000033 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (PMID:22164254) RGD PMID:22164254 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 acts_upstream_of_or_within ISO
IEA		 MGI:5438526 (PMID:22863743)
GO_REF:0000107		 RGD
Ensembl		 PMID:22863743 GO_REF:0000107 NCBI chr 5:144,064,949...144,110,422
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18678708)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18678708 GO_REF:0000024 GO_REF:0000107 NCBI chr20:3,680,607...3,693,329
Ensembl chr20:3,675,938...3,688,657 		JBrowse link
G C14h1orf146 similar to human chromosome 1 open reading frame 146 involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000002
(PMID:30949703)		 GO_Central
InterPro
RGD		 PMID:30949703 GO_REF:0000002 GO_REF:0000033 NCBI chr14:2,375,311...2,395,331
Ensembl chr14:2,231,451...2,270,782 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO MGI:3606747 (PMID:11702780), (PMID:12815066) RGD PMID:11702780 PMID:12815066 NCBI chr 1:144,709,278...144,817,388
Ensembl chr 1:135,300,461...135,409,760 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO MGI:3718790 (PMID:17599069) RGD PMID:17599069 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21478856)		 UniProt
Ensembl
RGD		 PMID:21478856 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:185,803,572...185,841,449
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (PMID:27760146) RGD PMID:27760146 NCBI chr 5:14,071,609...14,120,435
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO
IEA		 (PMID:26742488)
GO_REF:0000107		 RGD
Ensembl		 PMID:26742488 GO_REF:0000107 NCBI chr10:88,128,939...88,147,833
Ensembl chr10:87,628,875...87,646,752 		JBrowse link
G Mlh3 mutL homolog 3 acts_upstream_of_or_within ISO
IEA		 MGI:2384218 (PMID:16260499)
GO_REF:0000107		 RGD
Ensembl		 PMID:16260499 GO_REF:0000107 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO
IEA		 MGI:1349669|MGI:1929645 (PMID:22711701), (PMID:24589552)
GO_REF:0000107		 RGD
Ensembl		 PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr 3:160,620,500...160,648,716
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO
IEA		 MGI:1349669|MGI:3652039 (PMID:22711701), (PMID:24589552)
GO_REF:0000107		 RGD
Ensembl		 PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Shoc1 shortage in chiasmata 1 involved_in ISO
IEA		 (PMID:35485979)
GO_REF:0000107		 RGD
Ensembl		 PMID:35485979 GO_REF:0000107 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 involved_in ISO (PMID:33508233) RGD PMID:33508233 NCBI chr 6:97,314,829...97,351,069
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Spo11 SPO11 initiator of meiotic double strand breaks acts_upstream_of_or_within ISO
IEA		 MGI:1929645|MGI:2178805|MGI:3652039 (PMID:24589552), (PMID:27760146)
GO_REF:0000107		 RGD
Ensembl		 PMID:24589552 PMID:27760146 GO_REF:0000107 NCBI chr 3:182,173,615...182,189,273
Ensembl chr 3:161,757,519...161,770,925 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:40,173,713...40,195,959
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:21637789)		 GO_Central
Ensembl
InterPro
RGD		 PMID:21637789 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:122,336,427...122,362,608
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
(PMID:15937223), (PMID:15944401)
GO_REF:0000002
MGI:105931|MGI:109542|MGI:3580000 (PMID:22164254)		 UniProt
RGD
InterPro		 PMID:15937223 PMID:15944401 PMID:22164254 GO_REF:0000002 GO_REF:0000024 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in		 ISO MGI:1913904 (PMID:22164254)
(PMID:10678170)		 RGD PMID:10678170 PMID:22164254 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (PMID:23791195) RGD PMID:23791195 NCBI chr 7:11,683,505...11,689,491
Ensembl chr 7:11,032,898...11,039,869 		JBrowse link
G Terb2 telomere repeat binding bouquet formation protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:6362934|MGI:6362936 (PMID:30718482)
GO_REF:0000107		 RGD
Ensembl		 PMID:30718482 GO_REF:0000107 NCBI chr 3:129,591,933...129,610,293
Ensembl chr 3:109,138,343...109,156,683 		JBrowse link
G Tex11 testis expressed 11 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3526163 (PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:109542|MGI:3811722 (PMID:22164254)		 GO_Central
RGD		 PMID:22164254 GO_REF:0000033 NCBI chr 8:59,804,662...59,809,595
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3526165 (PMID:18283110)		 GO_Central
RGD		 PMID:18283110 GO_REF:0000033 NCBI chr16:65,302,049...65,362,065
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20711356)		 UniProt
Ensembl
RGD		 PMID:20711356 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:31,185,700...31,230,638
Ensembl chr 1:29,357,130...29,402,074 		JBrowse link
synaptonemal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa2 heat shock protein family A (Hsp70) member 2 acts_upstream_of_or_within ISO
IEA		 MGI:2447605 (PMID:9409676)
GO_REF:0000107		 RGD
Ensembl		 PMID:9409676 GO_REF:0000107 NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Plk1 polo-like kinase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:22854038)
GO_REF:0000107		 RGD
Ensembl		 PMID:22854038 GO_REF:0000107 NCBI chr 1:186,147,658...186,157,637
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      cellular component organization or biogenesis 7104
        cellular component organization 6817
          organelle organization 3713
            chromosome organization 530
              synaptonemal complex organization 29
                synaptonemal complex assembly + 26
                synaptonemal complex disassembly 2
paths to the root