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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of mitochondrial gene expression
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Accession:GO:0062125 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of mitochondrial gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).


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regulation of mitochondrial gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbfox2 RNA binding fox-1 homolog 2 IMP RGD PMID:34731606 RGD:329845875 NCBI chr 7:110,691,230...110,934,901
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
negative regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in ISO (PMID:22829778) RGD PMID:22829778 NCBI chr 4:79,381,963...79,390,786
Ensembl chr 4:78,051,059...78,059,905 		JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO
IEA		 (PMID:23283301)
GO_REF:0000107		 RGD
Ensembl		 PMID:23283301 GO_REF:0000107 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Sirt3 sirtuin 3 involved_in ISO (PMID:23283301) RGD PMID:23283301 NCBI chr 1:205,371,703...205,394,145
Ensembl chr 1:195,942,073...195,964,808 		JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21278163)		 UniProt
Ensembl
RGD		 PMID:21278163 GO_REF:0000024 GO_REF:0000107 NCBI chr10:65,617,547...65,622,042
Ensembl chr10:65,119,659...65,124,486 		JBrowse link
positive regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:22904065)		 UniProt
RGD		 PMID:22904065 GO_REF:0000024 NCBI chr10:56,198,534...56,203,185
Ensembl chr10:55,699,954...55,704,649 		JBrowse link
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (PMID:25738458) RGD PMID:25738458 NCBI chr 3:163,189,435...163,333,003
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Coa3 cytochrome C oxidase assembly factor 3 involved_in ISO
IEA		 (PMID:23260140)
GO_REF:0000107		 RGD
Ensembl		 PMID:23260140 GO_REF:0000107 NCBI chr10:86,720,454...86,721,435
Ensembl chr10:86,220,194...86,221,178 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:28869602) RGD PMID:28869602 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO
ISS		 (PMID:27667664)
GO_REF:0000024		 RGD
UniProt		 PMID:27667664 GO_REF:0000024 NCBI chr 9:72,659,961...72,681,986
Ensembl chr 9:65,168,228...65,188,174 		JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISO
ISS		 (PMID:27789713)
GO_REF:0000024		 RGD
UniProt		 PMID:27789713 GO_REF:0000024 NCBI chr 1:36,686,727...36,695,376
Ensembl chr 1:34,858,219...34,866,973 		JBrowse link
G LOC134479940 mitochondrial ribosome and complex I assembly factor AltMIEF1 involved_in ISO (PMID:30215512) RGD PMID:30215512 NCBI chr 7:113,668,645...113,672,790
Ensembl chr 7:111,786,726...111,792,148 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) RGD PMID:34774131 PMID:35017528 NCBI chr 3:76,140,465...76,271,367
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Mief1 mitochondrial elongation factor 1 involved_in ISO (PMID:30215512) RGD PMID:30215512 NCBI chr 7:113,666,918...113,679,550
Ensembl chr 7:111,786,709...111,802,220 		JBrowse link
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 involved_in ISO
IEA		 (PMID:24948607)
GO_REF:0000107		 RGD
Ensembl		 PMID:24948607 GO_REF:0000107 NCBI chr16:18,713,690...18,718,191
Ensembl chr16:18,681,826...18,684,212 		JBrowse link
G Ngrn neugrin, neurite outgrowth associated involved_in ISO
ISS		 (PMID:27667664)
GO_REF:0000024		 RGD
UniProt		 PMID:27667664 GO_REF:0000024 NCBI chr 1:143,622,494...143,628,609
Ensembl chr 1:134,213,456...134,219,339 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (PMID:24516400) RGD PMID:24516400 NCBI chr 5:134,749,024...134,773,630
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Rcc1l RCC1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:28,179,205...28,210,462
Ensembl chr12:22,543,734...22,574,036 		JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog involved_in ISO
IEA
IBA		 (PMID:25604853)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:25604853 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:43,265,207...43,299,748
Ensembl chr 1:40,859,829...40,894,314 		JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in ISO
IEA		 (PMID:27667664)
GO_REF:0000107		 RGD
Ensembl		 PMID:27667664 GO_REF:0000107 NCBI chr 4:148,108,857...148,118,246
Ensembl chr 4:146,558,562...146,562,794 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO
IEA
ISS		 (PMID:27667664)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27667664 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:41,875,217...41,884,702
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
IEA
IBA
ISS		 (PMID:27132592)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:27132592 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO
ISS		 (PMID:27667664)
GO_REF:0000024		 RGD
UniProt		 PMID:27667664 GO_REF:0000024 NCBI chr 3:33,447,101...33,457,712
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24385928)		 UniProt
RGD		 PMID:24385928 GO_REF:0000024 NCBI chr20:5,204,682...5,217,080
Ensembl chr20:5,202,837...5,214,164
Ensembl chr17:5,202,837...5,214,164 		JBrowse link
regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bckdk branched chain ketoacid dehydrogenase kinase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Kansl1 KAT8 regulatory NSL complex subunit 1 involved_in ISO
IEA		 (PMID:27768893)
GO_REF:0000107		 RGD
Ensembl		 PMID:27768893 GO_REF:0000107 NCBI chr10:89,737,637...89,868,620
Ensembl chr10:89,237,667...89,366,951 		JBrowse link
G Kansl3 KAT8 regulatory NSL complex subunit 3 involved_in ISO
IEA
ISS		 (PMID:27768893)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27768893 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:46,058,070...46,101,643
Ensembl chr 9:38,562,177...38,605,692 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO
IEA
ISS		 (PMID:27768893)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27768893 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:191,954,827...191,967,107
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:32183942) RGD PMID:32183942 NCBI chr 9:118,887,740...118,967,433
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G Mtres1 mitochondrial transcription rescue factor 1 involved_in ISO
IEA
IBA		 (PMID:31226201)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:31226201 GO_REF:0000033 GO_REF:0000107 NCBI chr20:48,604,479...48,622,364
Ensembl chr20:47,022,342...47,038,805 		JBrowse link
G Thap11 THAP domain containing 11 acts_upstream_of_or_within ISO MGI:3052237|MGI:3797582 (PMID:26876175) RGD PMID:26876175 NCBI chr19:50,656,839...50,658,656
Ensembl chr19:33,746,854...33,749,540 		JBrowse link
regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO
IEA		 (PMID:27497299)
GO_REF:0000107		 RGD
Ensembl		 PMID:27497299 GO_REF:0000107 NCBI chr 6:112,799,234...112,819,708
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:5438913 (PMID:22045337)		 GO_Central
Ensembl
RGD		 PMID:22045337 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:15,612,638...15,695,113
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO
IEA		 (PMID:23396448)
GO_REF:0000107		 RGD
Ensembl		 PMID:23396448 GO_REF:0000107 NCBI chr 1:204,361,176...204,373,917
Ensembl chr 1:194,931,531...194,944,277 		JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO
IEA		 (PMID:23396448)
GO_REF:0000107		 RGD
Ensembl		 PMID:23396448 GO_REF:0000107 NCBI chr 3:187,543,166...187,558,973
Ensembl chr 3:167,165,982...167,181,358 		JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27356879), (PMID:27497299) RGD PMID:27356879 PMID:27497299 NCBI chr11:50,960,187...51,062,366
Ensembl chr11:37,490,838...37,568,543 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO
IEA		 (PMID:29364879), (PMID:29452640)
GO_REF:0000107
(PMID:29323231), (PMID:29452640)		 RGD
Ensembl		 PMID:29323231 PMID:29364879 PMID:29452640 GO_REF:0000107 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Taco1 translational activator of cytochrome c oxidase I acts_upstream_of_or_within ISO
IEA		 MGI:5905291 (PMID:27319982)
GO_REF:0000107		 RGD
Ensembl		 PMID:27319982 GO_REF:0000107 NCBI chr10:91,502,395...91,510,299
Ensembl chr10:91,002,640...91,012,042 		JBrowse link
G Tsfm Ts translation elongation factor, mitochondrial involved_in ISS
ISO		 GO_REF:0000024
(PMID:27677415)		 UniProt
RGD		 PMID:27677415 GO_REF:0000024 NCBI chr 7:64,714,330...64,750,106
Ensembl chr 7:62,845,488...62,864,769 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        biosynthetic process 8654
          macromolecule biosynthetic process 7646
            gene expression 7208
              regulation of gene expression 5252
                regulation of mitochondrial gene expression 39
                  regulation of mitochondrial transcription + 10
                  regulation of mitochondrial translation + 28
Path 2
Term Annotations click to browse term
  biological_process 20558
    biological regulation 13833
      regulation of biological process 13394
        regulation of cellular process 13030
          regulation of metabolic process 6786
            regulation of macromolecule metabolic process 6240
              regulation of macromolecule biosynthetic process 5369
                regulation of gene expression 5252
                  regulation of mitochondrial gene expression 39
                    regulation of mitochondrial transcription + 10
                    regulation of mitochondrial translation + 28
paths to the root