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ONTOLOGY REPORT - ANNOTATIONS

Term:regulatory RNA binding
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Accession:GO:0061980 term browser browse the term
Definition:Binding to a small regulatory RNA, a short RNA (usually 50-200 nt long) that is either independently transcribed or processed from a longer RNA by an RNAse enzyme.


show annotations for term's descendants           Sort by:
miRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 enables ISO
IBA
IEA 		(PMID:15260970)
(PMID:22053081), (PMID:23185045)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:15260970 PMID:22053081 PMID:23185045 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables IEA
ISO
IBA 		GO_REF:0000104
RNAcentral:URS000034B6F5_9606|RNAcentral:URS00005416E3_9606 (PMID:15260970), (PMID:19966796), (PMID:31012336), (PMID:31507089)
(PMID:22503104), (PMID:23185045), (PMID:24101522)
GO_REF:0000033
GO_REF:0000107 		UniProt
RGD
GO_Central
Ensembl		 PMID:15260970 PMID:19966796 PMID:22503104 PMID:23185045 PMID:24101522 More... GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables ISO
IBA
IEA 		(PMID:15260970)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000107 		RGD
GO_Central
UniProt
Ensembl		 PMID:15260970 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 enables ISO
IBA
IEA 		(PMID:15260970)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000104 		RGD
GO_Central
Ensembl
UniProt		 PMID:15260970 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Ddx21 DExD-box helicase 21 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:28431233)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:28431233 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543 		JBrowse link
G Dicer1 dicer 1 ribonuclease III enables ISO (PMID:18604195) RGD PMID:18604195 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 NOT|enables ISO (PMID:18155131) RGD PMID:18155131 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:26595526)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:26595526 GO_REF:0000024 GO_REF:0000107 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 enables ISO (PMID:32060985) RGD PMID:32060985 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:17057366)
(PMID:20159450)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:17057366 PMID:20159450 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO
ISS 		(PMID:28431233)
GO_REF:0000024 		RGD
UniProt		 PMID:28431233 GO_REF:0000024 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISS
ISO 		GO_REF:0000024
(PMID:24356509) 		UniProt
RGD		 PMID:24356509 GO_REF:0000024 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Lin28a lin-28 homolog A enables ISO
IEA 		(PMID:18604195), (PMID:26045559), (PMID:28671666)
GO_REF:0000107 		RGD
Ensembl		 PMID:18604195 PMID:26045559 PMID:28671666 GO_REF:0000107 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Matr3 matrin 3 enables ISO
ISS 		(PMID:28431233)
GO_REF:0000024 		RGD
UniProt		 PMID:28431233 GO_REF:0000024 NCBI chr18:27,154,098...27,193,212
Ensembl chr18:27,163,714...27,193,166 		JBrowse link
G Matr3-ps2 matrin 3, pseudogene 2 enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr15:73,882,909...73,886,465 JBrowse link
G Mir361 microRNA 361 enables ISO (PMID:25057983) RGD PMID:25057983 NCBI chr  X:78,246,206...78,246,275
Ensembl chr  X:78,246,206...78,246,275 		JBrowse link
G Mir484 microRNA 484 enables ISO (PMID:25057983) RGD PMID:25057983 NCBI chr10:887,684...887,760
Ensembl chr10:887,684...887,760 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 enables ISO
IEA 		(PMID:20547861)
GO_REF:0000107 		RGD
Ensembl		 PMID:20547861 GO_REF:0000107 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:18710938), (PMID:19409607) RGD PMID:18710938 PMID:19409607 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Pum1 pumilio RNA-binding family member 1 enables ISO
IEA 		(PMID:28431233)
GO_REF:0000107 		RGD
Ensembl		 PMID:28431233 GO_REF:0000107 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 enables ISO
IEA 		(PMID:28431233)
GO_REF:0000107 		RGD
Ensembl		 PMID:28431233 GO_REF:0000107 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Pvt1 Pvt1 oncogene enables ISO (PMID:28258379) RGD PMID:28258379 NCBI chr 7:93,656,528...93,879,938 JBrowse link
G Qki QKI, KH domain containing RNA binding enables ISS
ISO 		GO_REF:0000024
(PMID:31792053) 		UniProt
RGD		 PMID:31792053 GO_REF:0000024 NCBI chr 1:52,935,357...53,047,338
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Rbm10 RNA binding motif protein 10 enables ISO
ISS
IEA 		(PMID:28431233)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:28431233 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:1,540,399...1,572,571
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbm14 RNA binding motif protein 14 enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Rbm4 RNA binding motif protein 4 enables ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 enables ISO
IEA 		(PMID:25697406)
GO_REF:0000107 		RGD
Ensembl		 PMID:25697406 GO_REF:0000107 NCBI chr13:75,707,098...75,779,114
Ensembl chr13:73,173,946...73,238,839 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 enables ISO (PMID:30294880) RGD PMID:30294880 NCBI chr10:103,193,909...103,197,322
Ensembl chr10:103,193,537...103,197,787 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO
IEA 		(PMID:18710938)
GO_REF:0000107 		RGD
Ensembl		 PMID:18710938 GO_REF:0000107 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Sox4 SRY-box transcription factor 4 enables ISO (PMID:26802803) RGD PMID:26802803 NCBI chr17:35,667,809...35,672,515
Ensembl chr17:35,667,537...35,673,665 		JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 enables ISO
IBA
IEA 		(PMID:28431233)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:28431233 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:13,451,191...13,458,918
Ensembl chr 3:13,451,202...13,493,355 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:135,527,710...135,532,826
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
G Trim71 tripartite motif containing 71 enables ISS
ISO 		GO_REF:0000024
(PMID:28431233)
(PMID:22735451) 		UniProt
RGD		 PMID:22735451 PMID:28431233 GO_REF:0000024 NCBI chr 8:123,076,499...123,129,016
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Tut4 terminal uridylyl transferase 4 enables ISO (PMID:28671666) RGD PMID:28671666 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 enables ISO
IEA 		(PMID:28671666)
GO_REF:0000107 		RGD
Ensembl		 PMID:28671666 GO_REF:0000107 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
G Ybx1 Y box binding protein 1 enables ISO
ISS 		(PMID:27559612)
GO_REF:0000024 		RGD
UniProt		 PMID:27559612 GO_REF:0000024 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 enables ISO
IEA 		(PMID:28431233)
GO_REF:0000107 		RGD
Ensembl		 PMID:28431233 GO_REF:0000107 NCBI chr 7:973,415...977,742
Ensembl chr 7:972,855...979,349 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:22055188)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:22055188 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zc3h7a zinc finger CCCH type containing 7 A enables ISO
IBA
IEA 		(PMID:28431233)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107 		RGD
GO_Central
InterPro
Ensembl		 PMID:28431233 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr10:4,473,177...4,512,668
Ensembl chr10:4,473,203...4,512,665 		JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B enables ISO
IBA
IEA 		(PMID:28431233)
GO_REF:0000033
GO_REF:0000002 		RGD
GO_Central
InterPro		 PMID:28431233 GO_REF:0000002 GO_REF:0000033 NCBI chr 7:113,262,142...113,310,399
Ensembl chr 7:113,262,165...113,310,399 		JBrowse link
G Zfp346 zinc finger protein 346 enables ISO
IEA 		(PMID:28431233)
GO_REF:0000107 		RGD
Ensembl		 PMID:28431233 GO_REF:0000107 NCBI chr17:9,493,787...9,523,681
Ensembl chr17:9,493,803...9,523,635 		JBrowse link
miRNA inhibitor activity via base-pairing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oip5-as1 OIP5 antisense RNA 1 enables ISO (PMID:33184237) RGD PMID:33184237 NCBI chr 3:106,578,309...106,591,845 JBrowse link
G Pvt1 Pvt1 oncogene enables ISO (PMID:28258379) RGD PMID:28258379 NCBI chr 7:93,656,528...93,879,938 JBrowse link
G Xist X inactive specific transcript enables ISO (PMID:29053187) RGD PMID:29053187 NCBI chr  X:68,474,987...68,492,500 JBrowse link
piRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 enables ISO
IEA 		(PMID:24787618)
GO_REF:0000107 		RGD
Ensembl		 PMID:24787618 GO_REF:0000107 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA 		RNAcentral:URS00000B9152_9606 (PMID:37332045)
GO_REF:0000107 		RGD
Ensembl		 PMID:37332045 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Mov10l1 Mov10 like RNA helicase 1 enables ISO (PMID:25762440) RGD PMID:25762440 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 enables ISO
IEA
IBA 		(PMID:28552346)
GO_REF:0000107
(PMID:16751776), (PMID:16766680), (PMID:16938833), (PMID:23328397), (PMID:24787618), (PMID:25582079), (PMID:28254886), (PMID:28552346)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16751776 PMID:16766680 PMID:16938833 PMID:23328397 PMID:24787618 More... GO_REF:0000033 GO_REF:0000107 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 enables ISO
IBA 		(PMID:21193640)
(PMID:16751777), (PMID:17446352), (PMID:18381894), (PMID:18404146), (PMID:18922463)
GO_REF:0000033 		RGD
GO_Central		 PMID:16751777 PMID:17446352 PMID:18381894 PMID:18404146 PMID:18922463 More... GO_REF:0000033 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 enables ISS
ISO
IBA 		GO_REF:0000024
(PMID:18922463)
GO_REF:0000033
(PMID:25038252) 		UniProt
RGD
GO_Central		 PMID:18922463 PMID:25038252 GO_REF:0000024 GO_REF:0000033 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761 		JBrowse link
G Tex19.1 testis expressed 19.1 enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:106,420,245...106,422,452
Ensembl chr10:106,420,139...106,422,425 		JBrowse link
G Tex19.2 testis expressed gene 19.2 enables ISO
IEA 		(PMID:28254886)
GO_REF:0000107 		RGD
Ensembl		 PMID:28254886 GO_REF:0000107 NCBI chr10:106,379,757...106,382,344
Ensembl chr10:106,379,757...106,382,344 		JBrowse link
siRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 contributes_to
enables 		ISO
IEA
ISS 		(PMID:15973356), (PMID:19701182)
GO_REF:0000107
GO_REF:0000024
GO_REF:0000104
(PMID:17495927) 		RGD
Ensembl
UniProt		 PMID:15973356 PMID:17495927 PMID:19701182 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Arb2a ARB2 cotranscriptional regulator A contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO
IEA 		(PMID:23361462)
GO_REF:0000107 		RGD
Ensembl		 PMID:23361462 GO_REF:0000107 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Dicer1 dicer 1 ribonuclease III enables ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17057366) 		UniProt
Ensembl
RGD		 PMID:17057366 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 enables ISO
IEA 		(PMID:15342650)
GO_REF:0000107 		RGD
Ensembl		 PMID:15342650 GO_REF:0000107 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mecp2 methyl CpG binding protein 2 enables ISO
IEA 		(PMID:15342650)
GO_REF:0000107 		RGD
Ensembl		 PMID:15342650 GO_REF:0000107 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex enables ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000002
GO_REF:0000107
GO_REF:0000033
GO_REF:0000104
(PMID:15973356) 		UniProt
InterPro
Ensembl
GO_Central
RGD		 PMID:15973356 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:135,527,710...135,532,826
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
G Tlr7 toll-like receptor 7 enables ISO
IEA 		(PMID:15723075)
GO_REF:0000107 		RGD
Ensembl		 PMID:15723075 GO_REF:0000107 NCBI chr  X:27,027,380...27,054,309
Ensembl chr  X:27,027,425...27,054,754 		JBrowse link
G Tlr9 toll-like receptor 9 enables ISO
IEA 		(PMID:15723075)
GO_REF:0000107 		RGD
Ensembl		 PMID:15723075 GO_REF:0000107 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21102
    binding 18100
      nucleic acid binding 3928
        RNA binding 1645
          regulatory RNA binding 58
            miRNA binding + 43
            piRNA binding 8
            siRNA binding 11
paths to the root