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ONTOLOGY REPORT - ANNOTATIONS


Term:3'-UTR-mediated mRNA destabilization
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Accession:GO:0061158 term browser browse the term
Definition:An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.



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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:26489465)
GO_REF:0000024
RGD
UniProt
PMID:26489465 GO_REF:0000024 NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,615,479...9,633,786
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO
ISS
(PMID:16126846), (PMID:28275056)
GO_REF:0000024
RGD
UniProt
PMID:16126846 PMID:28275056 GO_REF:0000024 NCBI chr 9:1,949,557...1,959,400
Ensembl chr 9:1,862,899...1,872,451
JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:194,982,014...195,003,513
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in ISO
IBA
(PMID:29180010)
GO_REF:0000033
(PMID:27616329)
RGD
GO_Central
PMID:27616329 PMID:29180010 GO_REF:0000033 NCBI chr 5:172,087,524...172,095,566
Ensembl chr 5:166,804,837...166,813,155
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,481,893...18,494,440
Ensembl chr17:18,275,688...18,288,102
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:26000482) RGD PMID:26000482 NCBI chr13:75,707,098...75,779,114
Ensembl chr13:73,173,946...73,238,839
JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:164,330,452...164,348,435
Ensembl chr 5:159,051,799...159,062,055
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:123,076,499...123,129,016
Ensembl chr 8:114,199,187...114,250,807
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr16:19,110,531...19,131,327
Ensembl chr16:19,076,322...19,096,568
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:19909337)
(PMID:19322177), (PMID:23185455), (PMID:26000482), (PMID:26134560)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D involved_in ISO (PMID:26134560) RGD PMID:26134560 NCBI chr 1:2,313,110...2,348,820
Ensembl chr 1:2,314,324...2,348,819
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
IEA
(PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
GO_REF:0000024
GO_REF:0000104
(PMID:17288565), (PMID:22701344), (PMID:27193233)
RGD
UniProt
PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... GO_REF:0000024 GO_REF:0000104 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
(PMID:20622884), (PMID:22701344), (PMID:24700863), (PMID:24733888), (PMID:27102483)
UniProt
RGD
PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... GO_REF:0000024 NCBI chr 6:104,663,396...104,669,815
Ensembl chr 6:98,930,718...98,935,748
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:25106868)
(PMID:20622884), (PMID:22701344)
RGD PMID:20622884 PMID:22701344 PMID:25106868 NCBI chr 6:16,242,622...16,246,662
Ensembl chr 6:10,490,032...10,494,064
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    biological regulation 13822
      regulation of biological quality 3449
        regulation of RNA stability 267
          regulation of mRNA stability 251
            mRNA destabilization 176
              3'-UTR-mediated mRNA destabilization 17
Path 2
Term Annotations click to browse term
  biological_process 20536
    biological regulation 13822
      regulation of biological process 13376
        regulation of cellular process 13014
          regulation of metabolic process 6834
            regulation of biosynthetic process 5630
              regulation of macromolecule biosynthetic process 5425
                regulation of gene expression 5308
                  negative regulation of gene expression 1390
                    mRNA catabolic process 340
                      regulation of mRNA catabolic process 266
                        regulation of mRNA stability 251
                          mRNA destabilization 176
                            3'-UTR-mediated mRNA destabilization 17
paths to the root