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ONTOLOGY REPORT - ANNOTATIONS

Term:pattern specification involved in kidney development
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Accession:GO:0061004 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within the kidney to which cells respond and eventually are instructed to differentiate.
Synonyms:exact_synonym: kidney pattern specification
 related_synonym: kidney pattern formation;   pattern formation involved in kidney development


show annotations for term's descendants           Sort by:
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:15634693)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:15634693 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:31,436,802...31,439,222
Ensembl chr 2:31,436,813...31,439,399 		JBrowse link
pattern specification involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15634693) 		Ensembl
RGD		 PMID:15634693 GO_REF:0000107 NCBI chr 2:31,436,802...31,439,222
Ensembl chr 2:31,436,813...31,439,399 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:18835385)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:18835385 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:38,093,011...38,100,021 		JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:12435636) 		UniProt
RGD		 PMID:12435636 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pax8 paired box 8 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12435636) 		UniProt
Ensembl
RGD		 PMID:12435636 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:27,584,002...27,640,631 		JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17875669) 		Ensembl
RGD		 PMID:17875669 GO_REF:0000107 NCBI chr 1:33,123,122...33,128,951
Ensembl chr 1:33,123,122...33,128,951 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:32,489,512...32,494,930
Ensembl chr 1:32,489,512...32,494,930 		JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17875669) 		Ensembl
RGD		 PMID:17875669 GO_REF:0000107 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:31,384,833...31,388,238 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:16790474)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:38,093,011...38,100,021 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17875669) 		Ensembl
RGD		 PMID:17875669 GO_REF:0000107 NCBI chr 1:33,123,122...33,128,951
Ensembl chr 1:33,123,122...33,128,951 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:32,489,512...32,494,930
Ensembl chr 1:32,489,512...32,494,930 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17875669) 		Ensembl
RGD		 PMID:17875669 GO_REF:0000107 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:31,384,833...31,388,238 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:16790474)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:38,093,011...38,100,021 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    multicellular organismal process 9018
      pattern specification process 507
        pattern specification involved in kidney development 8
          anterior/posterior pattern specification involved in kidney development + 1
          kidney field specification + 2
          pattern specification involved in mesonephros development + 1
          pattern specification involved in metanephros development + 4
          pattern specification involved in pronephros development + 2
          proximal/distal pattern formation involved in nephron development + 5
          renal capsule specification + 1
          specification of nephron tubule identity + 5
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        multicellular organism development 5415
          system development 4702
            renal system development 423
              kidney development 410
                pattern specification involved in kidney development 8
                  anterior/posterior pattern specification involved in kidney development + 1
                  kidney field specification + 2
                  pattern specification involved in mesonephros development + 1
                  pattern specification involved in metanephros development + 4
                  pattern specification involved in pronephros development + 2
                  proximal/distal pattern formation involved in nephron development + 5
                  renal capsule specification + 1
                  specification of nephron tubule identity + 5
paths to the root