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ONTOLOGY REPORT - ANNOTATIONS

Term:cardiac pacemaker cell differentiation
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Accession:GO:0060920 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a pacemaker cell. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.
Synonyms:broad_synonym: pacemaker cell differentiation


show annotations for term's descendants           Sort by:
cardiac pacemaker cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6358100 (PMID:29666184) 		Ensembl
RGD		 PMID:29666184 GO_REF:0000107 NCBI chr 4:177,240,692...177,246,548
Ensembl chr 4:177,239,908...177,246,531 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19166829) 		Ensembl
RGD		 PMID:19166829 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
atrioventricular node cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in IEA
ISO 		GO_REF:0000107
(PMID:17998461) 		Ensembl
RGD		 PMID:17998461 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,742,875...9,786,861 		JBrowse link
G Maml1 mastermind-like transcriptional coactivator 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21266778) 		Ensembl
RGD		 PMID:21266778 GO_REF:0000107 NCBI chr10:35,089,715...35,124,100
Ensembl chr10:35,089,715...35,124,100 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3042511 (PMID:19546853) 		Ensembl
RGD		 PMID:19546853 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458
Ensembl chr10:16,848,582...16,851,452 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15289437) 		Ensembl
RGD		 PMID:15289437 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:42,348,485...42,395,359 		JBrowse link
atrioventricular node cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6358100 (PMID:29666184) 		Ensembl
RGD		 PMID:29666184 GO_REF:0000107 NCBI chr 4:177,240,692...177,246,548
Ensembl chr 4:177,239,908...177,246,531 		JBrowse link
atrioventricular node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3042511 (PMID:15109497) 		Ensembl
RGD		 PMID:15109497 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458
Ensembl chr10:16,848,582...16,851,452 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15289437) 		Ensembl
RGD		 PMID:15289437 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:42,348,485...42,395,359 		JBrowse link
sinoatrial node cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:26193633) 		Ensembl
RGD		 PMID:26193633 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:49,813,618...49,823,442 		JBrowse link
G Popdc1 popeye domain cAMP effector 1 acts_upstream_of_or_within ISO MGI:2385915 (PMID:22354168) RGD PMID:22354168 NCBI chr20:50,401,611...50,442,653
Ensembl chr20:50,401,733...50,442,645 		JBrowse link
G Popdc2 popeye domain cAMP effector 2 acts_upstream_of_or_within ISO MGI:3773727 (PMID:22354168) RGD PMID:22354168 NCBI chr11:75,850,068...75,897,094
Ensembl chr11:75,880,274...75,896,269 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21640717) 		Ensembl
RGD		 PMID:21640717 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO
IEA 		(PMID:23242162)
GO_REF:0000107 		RGD
Ensembl		 PMID:23242162 GO_REF:0000107 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:97,531,960...97,559,965 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:22130515)
GO_REF:0000107
MGI:3710254 (PMID:19096026) 		RGD
Ensembl		 PMID:19096026 PMID:22130515 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
sinoatrial node cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:18297060)
GO_REF:0000107 		RGD
Ensembl		 PMID:18297060 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:143,147,671...143,149,189 		JBrowse link
sinoatrial node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx18 T-box transcription factor 18 involved_in ISO
IEA 		(PMID:23242162)
GO_REF:0000107 		RGD
Ensembl		 PMID:23242162 GO_REF:0000107 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:97,531,960...97,559,965 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      cellular developmental process 4933
        cell differentiation 4932
          cardiocyte differentiation 214
            cardiac muscle cell differentiation 173
              cardiac pacemaker cell differentiation 12
                atrioventricular node cell differentiation + 5
                cardiac pacemaker cell development + 10
                cardiac pacemaker cell fate commitment + 3
                sinoatrial node cell differentiation + 7
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        multicellular organism development 5415
          system development 4702
            circulatory system development 1403
              heart development 752
                cardiac muscle tissue development 297
                  cardiac muscle cell differentiation 173
                    cardiac pacemaker cell differentiation 12
                      atrioventricular node cell differentiation + 5
                      cardiac pacemaker cell development + 10
                      cardiac pacemaker cell fate commitment + 3
                      sinoatrial node cell differentiation + 7
paths to the root