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ONTOLOGY REPORT - ANNOTATIONS

Term:cardiac cell fate commitment
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Accession:GO:0060911 term browser browse the term
Definition:The commitment of cells to specific cardiac cell fates and their capacity to differentiate into cardiac cells. Cardiac cells are cells that comprise the organ which pumps blood through the circulatory system.
Synonyms:exact_synonym: cardiocyte cell fate commitment


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atrioventricular node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:3042511 (PMID:15109497)
GO_REF:0000107		 RGD
Ensembl		 PMID:15109497 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15289437)		 Ensembl
RGD		 PMID:15289437 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
cardiac cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19571884)
GO_REF:0000107
(PMID:19620969)		 RGD
Ensembl		 PMID:19571884 PMID:19620969 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA		 (PMID:19736317)
GO_REF:0000107		 RGD
Ensembl		 PMID:19736317 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO MGI:2154539 (PMID:9004034) RGD PMID:9004034 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO MGI:3655239 (PMID:17350578) RGD PMID:17350578 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:150,780,381...151,259,144 		JBrowse link
cardiac muscle cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA		 (PMID:19506109)
GO_REF:0000107		 RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3583755 (PMID:22711842) RGD PMID:22711842 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:3710254 (PMID:18467625)
GO_REF:0000107		 RGD
Ensembl		 PMID:18467625 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Wnt3a Wnt family member 3A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:20559569)
GO_REF:0000107
MGI:2143322 (PMID:21554246)		 RGD
Ensembl		 PMID:20559569 PMID:21554246 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:21654746) RGD PMID:21654746 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
endocardial cushion cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA		 (PMID:19506109)
GO_REF:0000107		 RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
regulation of cardiac cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA		 (PMID:17360443)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360443 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
sinoatrial node cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx18 T-box transcription factor 18 involved_in ISO
IEA		 (PMID:23242162)
GO_REF:0000107		 RGD
Ensembl		 PMID:23242162 GO_REF:0000107 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      cellular developmental process 4838
        cell fate commitment 295
          cardiac cell fate commitment 14
            His-Purkinje system cell fate commitment 0
            cardiac cell fate determination + 4
            cardiac cell fate specification + 3
            cardiac fibroblast cell fate commitment + 0
            cardiac glial cell fate commitment + 0
            cardiac muscle cell fate commitment + 8
            cardiac neuron fate commitment 0
            cardiac vascular smooth muscle cell fate commitment + 0
            cardioblast cell fate commitment + 0
            dorsal vessel aortic cell fate commitment 0
            dorsal vessel heart proper cell fate commitment 0
            endocardial cell fate commitment + 1
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            circulatory system development 1387
              heart development 750
                cardiocyte differentiation 211
                  cardiac cell fate commitment 14
                    His-Purkinje system cell fate commitment 0
                    cardiac cell fate determination + 4
                    cardiac cell fate specification + 3
                    cardiac fibroblast cell fate commitment + 0
                    cardiac glial cell fate commitment + 0
                    cardiac muscle cell fate commitment + 8
                    cardiac neuron fate commitment 0
                    cardiac vascular smooth muscle cell fate commitment + 0
                    cardioblast cell fate commitment + 0
                    dorsal vessel aortic cell fate commitment 0
                    dorsal vessel heart proper cell fate commitment 0
                    endocardial cell fate commitment + 1
paths to the root