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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic vesicle lumen
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Accession:GO:0060205 term browser browse the term
Definition:The volume enclosed by a cytoplasmic vesicle.
Synonyms:related_synonym: cytoplasmic membrane-bounded vesicle lumen;   cytoplasmic membrane-enclosed vesicle lumen


show annotations for term's descendants           Sort by:
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase located_in IEA UniProt GO_REF:0000044 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,497...47,072,245 		JBrowse link
G FASLG Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chr 9:115,068,314...115,075,147
Ensembl chr 9:115,068,090...115,076,464 		JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:106,559,326...106,636,930
Ensembl chr13:106,559,736...106,658,110 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRSS57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chr 2:77,649,741...77,657,627
Ensembl chr 2:77,650,879...77,655,712 		JBrowse link
G PRTN3 proteinase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:77,520,314...77,526,303
Ensembl chr 2:77,520,314...77,523,563 		JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA UniProt GO_REF:0000044 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,175...273,225,552 		JBrowse link
G PENK proenkephalin located_in IEA UniProt GO_REF:0000044 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876 		JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCYAP1 adenylate cyclase activating polypeptide 1 is_active_in ISO PMID:9792613 SynGO PMID:9792613 RGD:2312463 NCBI chr 6:105,414,628...105,422,294
Ensembl chr 6:105,414,631...105,422,294 		JBrowse link
G CCK cholecystokinin is_active_in ISO PMID:6084830 SynGO PMID:6084830 RGD:405650225 NCBI chr13:25,940,674...25,945,879
Ensembl chr13:25,937,645...25,945,793 		JBrowse link
G CRH corticotropin releasing hormone is_active_in ISO PMID:19003957 SynGO PMID:19003957 RGD:405650366 NCBI chr 4:68,481,696...68,486,122
Ensembl chr 4:68,484,053...68,486,121 		JBrowse link
G GHRL ghrelin and obestatin prepropeptide is_active_in
located_in		 ISO
IEA		 (PMID:12597862) SynGO
Ensembl		 PMID:12597862 GO_REF:0000107 NCBI chr13:66,442,106...66,453,576
Ensembl chr13:66,445,992...66,452,917 		JBrowse link
G HCRT hypocretin neuropeptide precursor is_active_in ISO PMID:9419374 SynGO PMID:9419374 RGD:1298943 NCBI chr12:20,588,597...20,589,991
Ensembl chr12:20,588,027...20,589,988 		JBrowse link
G IGF1 insulin like growth factor 1 is_active_in ISO (PMID:28683263) SynGO PMID:28683263 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033 		JBrowse link
G PDYN prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr17:33,505,075...33,521,534
Ensembl chr17:33,505,079...33,521,532 		JBrowse link
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876 		JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:230,069,339...230,331,343
Ensembl chr 1:230,069,368...230,331,200 		JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,175...273,225,552 		JBrowse link
G GRP gastrin releasing peptide located_in ISS UniProt GO_REF:0000024 NCBI chr 1:161,708,815...161,721,986
Ensembl chr 1:161,708,812...161,721,782 		JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:106,559,326...106,636,930
Ensembl chr13:106,559,736...106,658,110 		JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18691
    cellular anatomical structure 18472
      cytoplasm 10703
        cytoplasmic vesicle 1896
          cytoplasmic vesicle lumen 16
            COPI-coated vesicle lumen 0
            COPII-coated vesicle lumen 0
            Golgi-associated vesicle lumen 0
            aleurone grain lumen 0
            clathrin-sculpted acetylcholine transport vesicle lumen 0
            clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
            clathrin-sculpted glutamate transport vesicle lumen 0
            clathrin-sculpted monoamine transport vesicle lumen 0
            cytolytic granule lumen 0
            esterosome lumen 0
            melanosome lumen 0
            phagolysosome vesicle lumen 0
            plasma membrane-derived thylakoid lumen 0
            secretory granule lumen + 14
            spine apparatus lumen 0
            synaptic vesicle lumen 1
            transport vesicle lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 18691
    cellular anatomical structure 18472
      organelle 12493
        intracellular organelle 12082
          intracellular membrane-bounded organelle 10939
            intracellular vesicle 1905
              cytoplasmic vesicle 1896
                cytoplasmic vesicle lumen 16
                  COPI-coated vesicle lumen 0
                  COPII-coated vesicle lumen 0
                  Golgi-associated vesicle lumen 0
                  aleurone grain lumen 0
                  clathrin-sculpted acetylcholine transport vesicle lumen 0
                  clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
                  clathrin-sculpted glutamate transport vesicle lumen 0
                  clathrin-sculpted monoamine transport vesicle lumen 0
                  cytolytic granule lumen 0
                  esterosome lumen 0
                  melanosome lumen 0
                  phagolysosome vesicle lumen 0
                  plasma membrane-derived thylakoid lumen 0
                  secretory granule lumen + 14
                  spine apparatus lumen 0
                  synaptic vesicle lumen 1
                  transport vesicle lumen + 0
paths to the root