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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic vesicle lumen
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Accession:GO:0060205 term browser browse the term
Definition:The volume enclosed by a cytoplasmic vesicle.
Synonyms:related_synonym: cytoplasmic membrane-bounded vesicle lumen;   cytoplasmic membrane-enclosed vesicle lumen

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show annotations for term's descendants           Sort by:
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883 		JBrowse link
G Faslg Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624771:9,031,978...9,038,760
Ensembl chrNW_004624771:9,032,016...9,038,825 		JBrowse link
G Serpini1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:45,698,714...45,791,744
Ensembl chrNW_004624730:45,739,911...45,795,570 		JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624760:2,016,066...2,030,240
Ensembl chrNW_004624760:2,015,474...2,029,939 		JBrowse link
G Penk proenkephalin located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624886:3,595,485...3,613,117
Ensembl chrNW_004624886:3,595,450...3,613,593 		JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 is_active_in ISO PMID:9792613 SynGO PMID:9792613 RGD:2312463 NCBI chrNW_004624770:11,359,606...11,375,833
Ensembl chrNW_004624770:11,358,286...11,375,813 		JBrowse link
G Cck cholecystokinin is_active_in ISO PMID:6084830 SynGO PMID:6084830 RGD:405650225 NCBI chrNW_004624730:77,310,080...77,314,258
Ensembl chrNW_004624730:77,309,633...77,314,384 		JBrowse link
G Crh corticotropin releasing hormone is_active_in ISO PMID:19003957 SynGO PMID:19003957 RGD:405650366 NCBI chrNW_004624744:25,194,458...25,196,658
Ensembl chrNW_004624744:25,194,495...25,196,488 		JBrowse link
G Ghrl ghrelin and obestatin prepropeptide located_in
is_active_in		 IEA
ISO		 (PMID:12597862) Ensembl
SynGO		 PMID:12597862 GO_REF:0000107 NCBI chrNW_004624731:5,257,813...5,262,878
Ensembl chrNW_004624731:5,257,830...5,262,473 		JBrowse link
G Hcrt hypocretin neuropeptide precursor is_active_in ISO PMID:9419374 SynGO PMID:9419374 RGD:1298943 NCBI chrNW_004624795:1,744,782...1,747,360
Ensembl chrNW_004624795:1,744,648...1,746,633 		JBrowse link
G Igf1 insulin like growth factor 1 is_active_in ISO (PMID:28683263) SynGO PMID:28683263 NCBI chrNW_004624750:5,881,065...5,954,799
Ensembl chrNW_004624750:5,881,091...5,952,300 		JBrowse link
G Pdyn prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chrNW_004624741:3,239,101...3,253,507
Ensembl chrNW_004624741:3,237,942...3,253,503 		JBrowse link
G Penk proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chrNW_004624886:3,595,485...3,613,117
Ensembl chrNW_004624886:3,595,450...3,613,593 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A located_in ISO (PMID:22366033) UniProt PMID:22366033 NCBI chrNW_004624811:4,639,926...4,902,749
Ensembl chrNW_004624811:4,640,090...4,901,510 		JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in ISO (PMID:7961964) UniProt PMID:7961964 NCBI chrNW_004624760:2,016,066...2,030,240
Ensembl chrNW_004624760:2,015,474...2,029,939 		JBrowse link
G Serpini1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:45,698,714...45,791,744
Ensembl chrNW_004624730:45,739,911...45,795,570 		JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chrNW_004624886:3,595,485...3,613,117
Ensembl chrNW_004624886:3,595,450...3,613,593 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      cytoplasm 10505
        cytoplasmic vesicle 1786
          cytoplasmic vesicle lumen 13
            COPI-coated vesicle lumen 0
            COPII-coated vesicle lumen 0
            Golgi-associated vesicle lumen 0
            aleurone grain lumen 0
            clathrin-sculpted acetylcholine transport vesicle lumen 0
            clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
            clathrin-sculpted glutamate transport vesicle lumen 0
            clathrin-sculpted monoamine transport vesicle lumen 0
            cytolytic granule lumen 0
            esterosome lumen 0
            melanosome lumen 0
            phagolysosome vesicle lumen 0
            plasma membrane-derived thylakoid lumen 0
            secretory granule lumen + 11
            spine apparatus lumen 0
            synaptic vesicle lumen 1
            transport vesicle lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      organelle 13116
        intracellular organelle 12714
          intracellular membrane-bounded organelle 11497
            intracellular vesicle 1794
              cytoplasmic vesicle 1786
                cytoplasmic vesicle lumen 13
                  COPI-coated vesicle lumen 0
                  COPII-coated vesicle lumen 0
                  Golgi-associated vesicle lumen 0
                  aleurone grain lumen 0
                  clathrin-sculpted acetylcholine transport vesicle lumen 0
                  clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
                  clathrin-sculpted glutamate transport vesicle lumen 0
                  clathrin-sculpted monoamine transport vesicle lumen 0
                  cytolytic granule lumen 0
                  esterosome lumen 0
                  melanosome lumen 0
                  phagolysosome vesicle lumen 0
                  plasma membrane-derived thylakoid lumen 0
                  secretory granule lumen + 11
                  spine apparatus lumen 0
                  synaptic vesicle lumen 1
                  transport vesicle lumen + 0
paths to the root