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ONTOLOGY REPORT - ANNOTATIONS


Term:inner ear receptor cell stereocilium organization
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Accession:GO:0060122 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of inner ear receptor cells.
Synonyms:exact_synonym: inner ear hair cell receptor stereocilium organization;   inner ear receptor stereocilium organisation
 related_synonym: inner ear receptor stereocilium organization and biogenesis



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inner ear receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3527179 (PMID:17567809) RGD PMID:17567809 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:21071598) RGD PMID:21071598 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA
MGI:2154548 (PMID:18339676)
GO_REF:0000107
RGD
Ensembl
PMID:18339676 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO
IEA
MGI:3574034|MGI:4829945 (PMID:21246654)
GO_REF:0000107
RGD
Ensembl
PMID:21246654 GO_REF:0000107 NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451
JBrowse link
G Clic5 chloride intracellular channel 5 involved_in ISO (PMID:24285636) RGD PMID:24285636 NCBI chr 9:16,710,980...16,813,502
Ensembl chr 9:16,710,980...16,813,427
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO
IEA
MGI:1915838 (PMID:18606138)
GO_REF:0000107
RGD
Ensembl
PMID:18606138 GO_REF:0000107 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO
IEA
MGI:3846573 (PMID:21303848)
GO_REF:0000107
RGD
Ensembl
PMID:21303848 GO_REF:0000107 NCBI chr 2:121,927,266...122,056,700
Ensembl chr 2:121,927,942...122,056,707
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
(PMID:20137774)
GO_Central
Ensembl
RGD
PMID:20137774 GO_REF:0000033 GO_REF:0000107 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO
IEA
MGI:6281113|MGI:6281114 (PMID:30380417)
GO_REF:0000107
RGD
Ensembl
PMID:30380417 GO_REF:0000107 NCBI chr18:33,984,689...33,998,094
Ensembl chr18:33,984,689...33,998,094
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA
MGI:104876|MGI:1341800 (PMID:21300049)
GO_REF:0000107
RGD
Ensembl
PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO MGI:104853|MGI:1341800 (PMID:21300049) RGD PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:104853|MGI:104876 (PMID:21300049) RGD PMID:21300049 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:93,095,498...93,100,312
JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO
IEA
MGI:3817268 (PMID:25605782)
GO_REF:0000107
RGD
Ensembl
PMID:25605782 GO_REF:0000107 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:111,619,145...111,635,129
Ensembl chr 7:109,738,622...109,754,416
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1932522|MGI:2135272|MGI:3710185 (PMID:18066062) RGD PMID:18066062 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2386464 (PMID:18066062) RGD PMID:18066062 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191
JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:54,737,670...54,752,388
Ensembl chr18:52,539,917...52,554,461
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA
MGI:4887578 (PMID:21045211)
GO_REF:0000107
RGD
Ensembl
PMID:21045211 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA
MGI:2155422 (PMID:18339676)
GO_REF:0000107
RGD
Ensembl
PMID:18339676 GO_REF:0000107 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Otog otogelin acts_upstream_of_or_within ISO
IEA
(PMID:31776257)
GO_REF:0000107
RGD
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr 1:96,746,336...96,815,416
Ensembl chr 1:96,746,336...96,815,415
JBrowse link
G Otogl otogelin-like acts_upstream_of_or_within ISO
IEA
(PMID:31776257)
GO_REF:0000107
RGD
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr 7:43,065,800...43,211,400
Ensembl chr 7:43,067,644...43,223,592
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA
MGI:1856394 (PMID:18339676)
GO_REF:0000107
RGD
Ensembl
PMID:18339676 GO_REF:0000107 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:5056373 (PMID:21515572) RGD PMID:21515572 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO
IEA
MGI:2135272 (PMID:23760952)
GO_REF:0000107
RGD
Ensembl
PMID:23760952 GO_REF:0000107 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:153,154,896...153,173,580
JBrowse link
G Strc stereocilin acts_upstream_of_or_within ISO
IEA
(PMID:31776257)
GO_REF:0000107
RGD
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO
IEA
MGI:3836913 (PMID:25605782)
GO_REF:0000107
RGD
Ensembl
PMID:25605782 GO_REF:0000107 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO
IEA
(PMID:10575115)
GO_REF:0000107
RGD
Ensembl
PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS
ISO
GO_REF:0000024
(PMID:32127020)
UniProt
RGD
PMID:32127020 GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA
MGI:5140723 (PMID:25605782)
GO_REF:0000107
RGD
Ensembl
PMID:25605782 GO_REF:0000107 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3757683 (PMID:18339676)
GO_REF:0000033
RGD
GO_Central
PMID:18339676 GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO
IEA
MGI:1856575 (PMID:18339676)
GO_REF:0000107
RGD
Ensembl
PMID:18339676 GO_REF:0000107 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA
MGI:1349164|MGI:1857642|MGI:98715 (PMID:18066062), (PMID:18606138), (PMID:23760952)
GO_REF:0000107
RGD
Ensembl
PMID:18066062 PMID:18606138 PMID:23760952 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
G Whrn whirlin involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:12124769), (PMID:17326148)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12124769 PMID:17326148 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO
IEA
(PMID:35175278)
GO_REF:0000107
RGD
Ensembl
PMID:35175278 GO_REF:0000107 NCBI chr 7:8,061,634...8,081,142
Ensembl chr 7:8,061,953...8,081,142
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA
MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (PMID:11138008), (PMID:11322776), (PMID:12121736), (PMID:15537665), (PMID:17050716), (PMID:23217710), (PMID:7610888), (PMID:8790740), (PMID:9039475)
GO_REF:0000107
RGD
Ensembl
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:16,710,980...16,813,502
Ensembl chr 9:16,710,980...16,813,427
JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO
IEA
MGI:3850171 (PMID:19414487), (PMID:19423712)
GO_REF:0000107
RGD
Ensembl
PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Clrn2 clarin 2 involved_in ISO
IEA
(PMID:33496845)
GO_REF:0000107
RGD
Ensembl
PMID:33496845 GO_REF:0000107 NCBI chr14:65,656,029...65,666,325
Ensembl chr14:65,656,550...65,666,193
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA
(PMID:35235570)
GO_REF:0000107
RGD
Ensembl
PMID:35235570 GO_REF:0000107 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO
IEA
MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417)
GO_REF:0000107
RGD
Ensembl
PMID:30380417 GO_REF:0000107 NCBI chr18:33,984,689...33,998,094
Ensembl chr18:33,984,689...33,998,094
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO
IEA
MGI:3055797|MGI:3718054 (PMID:15905332), (PMID:17876667), (PMID:23217710)
GO_REF:0000107
RGD
Ensembl
PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr20:6,632,324...6,642,534
Ensembl chr20:6,632,362...6,642,532
JBrowse link
G Myo3a myosin IIIA involved_in ISO MGI:2448580 (PMID:26754646) RGD PMID:26754646 NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB involved_in ISO MGI:2183924 (PMID:26754646) RGD PMID:26754646 NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA
MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736), (PMID:17050716)
GO_REF:0000107
RGD
Ensembl
PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,403,189...100,420,290
Ensembl chr10:100,403,069...100,420,598
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA
MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (PMID:10978835), (PMID:11124469), (PMID:15537665), (PMID:16887306), (PMID:23217710)
GO_REF:0000107
RGD
Ensembl
PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 GO_REF:0000107 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
MGI:4433578 (PMID:24334608)
GO_Central
Ensembl
RGD
PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Pls1 plastin 1 involved_in ISO
IEA
(PMID:25124451)
GO_REF:0000107
RGD
Ensembl
PMID:25124451 GO_REF:0000107 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) RGD PMID:27269051 NCBI chr17:40,323,748...40,547,482
Ensembl chr17:40,323,867...40,548,092
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
MGI:1857872 (PMID:10464373), (PMID:10466888)
UniProt
Ensembl
RGD
PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007)
GO_REF:0000107
(PMID:21165971)
RGD
Ensembl
PMID:18849963 PMID:21165971 PMID:30801007 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134
JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO
IEA
MGI:2153816 (PMID:30801007)
GO_REF:0000107
RGD
Ensembl
PMID:30801007 GO_REF:0000107 NCBI chr 8:42,707,962...42,779,726
Ensembl chr 8:42,707,962...42,779,707
JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
MGI:2685697 (PMID:30380417)
GO_Central
Ensembl
RGD
PMID:30380417 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:8,076,164...8,083,642
Ensembl chr 3:8,075,137...8,083,642
JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:110,506,248...110,562,474
JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000107
MGI:4432119 (PMID:27117407)
GO_Central
Ensembl
RGD
PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
stereocilium maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clrn2 clarin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5792002|MGI:6458758 (PMID:31448880)
(PMID:33496845)
GO_REF:0000107
RGD
Ensembl
PMID:31448880 PMID:33496845 GO_REF:0000107 NCBI chr14:65,656,029...65,666,325
Ensembl chr14:65,656,550...65,666,193
JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within ISO
IEA
MGI:6455516 (PMID:31628468)
GO_REF:0000107
RGD
Ensembl
PMID:31628468 GO_REF:0000107 NCBI chr 4:104,614,665...104,653,122
Ensembl chr 4:104,614,676...104,653,053
JBrowse link
G Pjvk pejvakin acts_upstream_of_or_within ISO
IEA
MGI:5014098|MGI:5925280 (PMID:28209736)
GO_REF:0000107
RGD
Ensembl
PMID:28209736 GO_REF:0000107 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045
JBrowse link
G Tprn taperin involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
MGI:5897817 (PMID:27693694), (PMID:30159668), (PMID:37952086)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:27693694 PMID:30159668 PMID:37952086 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:8,076,164...8,083,642
Ensembl chr 3:8,075,137...8,083,642
JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in ISO
IEA
(PMID:25124451)
GO_REF:0000107
RGD
Ensembl
PMID:25124451 GO_REF:0000107 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        inner ear development 259
          inner ear receptor cell differentiation 95
            inner ear receptor cell development 71
              inner ear receptor cell stereocilium organization 52
                auditory receptor cell stereocilium organization 26
                stereocilium maintenance 4
                vestibular receptor cell stereocilium organization 1
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            nervous system development 2881
              neurogenesis 2127
                generation of neurons 1821
                  neuron differentiation 1741
                    mechanoreceptor differentiation 103
                      inner ear receptor cell differentiation 95
                        inner ear receptor cell development 71
                          inner ear receptor cell stereocilium organization 52
                            auditory receptor cell stereocilium organization 26
                            stereocilium maintenance 4
                            vestibular receptor cell stereocilium organization 1
paths to the root