Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:angiogenesis involved in wound healing
go back to main search page
Accession:GO:0060055 term browser browse the term
Definition:Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.


show annotations for term's descendants           Sort by:
angiogenesis involved in wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2450889 (PMID:15039218)
GO_REF:0000107		 RGD
Ensembl		 PMID:15039218 GO_REF:0000107 NCBI chr 5:60,731,601...60,778,456
Ensembl chr 5:55,935,615...55,982,461 		JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 acts_upstream_of_or_within ISO
IEA		 MGI:3608773 (PMID:18097059)
GO_REF:0000107		 RGD
Ensembl		 PMID:18097059 GO_REF:0000107 NCBI chr19:10,233,326...10,244,856
Ensembl chr19:10,227,340...10,236,833 		JBrowse link
G Dag1 dystroglycan 1 IEP RGD PMID:21192954 RGD:11541061 NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:108,890,929...108,952,325 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:9600079 RGD:2313680 NCBI chr 8:39,303,936...39,426,022
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Gpr4 G protein-coupled receptor 4 acts_upstream_of_or_within ISO (PMID:17145776) RGD PMID:17145776 NCBI chr 1:87,993,398...88,004,568
Ensembl chr 1:78,865,409...78,876,599 		JBrowse link
G Gpx1 glutathione peroxidase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2158814 (PMID:16373599)
GO_REF:0000107		 RGD
Ensembl		 PMID:16373599 GO_REF:0000107 NCBI chr 8:117,905,462...117,906,588
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Hpse heparanase involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:15793281)		 GO_Central
Ensembl
RGD		 PMID:15793281 GO_REF:0000033 GO_REF:0000107 NCBI chr14:9,200,971...9,241,377
Ensembl chr14:8,896,593...8,937,010 		JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:27545451 RGD:151893485 NCBI chr  X:6,022,621...6,022,723
Ensembl chr  X:3,428,904...3,429,006 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta acts_upstream_of_or_within ISO
IEA		 MGI:3795849 (PMID:25139353)
GO_REF:0000107		 RGD
Ensembl		 PMID:25139353 GO_REF:0000107 NCBI chr 8:108,474,017...108,579,140
Ensembl chr 8:99,594,644...99,699,663 		JBrowse link
G Prcp prolylcarboxypeptidase involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4123993 (PMID:23744584)		 GO_Central
Ensembl
RGD		 PMID:23744584 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:156,343,894...156,396,295
Ensembl chr 1:146,930,561...146,984,530 		JBrowse link
G Stard13 StAR-related lipid transfer domain containing 13 NOT|acts_upstream_of_or_within ISO MGI:4363733 (PMID:20208559) RGD PMID:20208559 NCBI chr12:5,401,878...5,797,937
Ensembl chr12:566,310...959,421 		JBrowse link
negative regulation of vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24226420)		 UniProt
Ensembl
RGD		 PMID:24226420 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:151,203,948...151,251,126
Ensembl chr 4:149,531,515...149,578,743 		JBrowse link
G Mir200b microRNA 200b acts_upstream_of ISO (PMID:22499991) RGD PMID:22499991 NCBI chr 5:171,931,495...171,931,589
Ensembl chr 5:166,649,272...166,649,366 		JBrowse link
G Mir34a microRNA 34a involved_in ISO (PMID:26493107) RGD PMID:26493107 NCBI chr 5:165,815,952...165,816,053
Ensembl chr 5:160,533,002...160,533,103 		JBrowse link
G Serpine1 serpin family E member 1 involved_in ISO
IEA
IBA		 UniProtKB:P22777 (PMID:9386191)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:9386191 GO_REF:0000033 GO_REF:0000107 NCBI chr12:25,237,977...25,248,356
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (PMID:28577991) RGD PMID:28577991 NCBI chr18:53,546,263...53,614,478
Ensembl chr18:51,348,302...51,416,440 		JBrowse link
G Tafa5 TAFA chemokine like family member 5 acts_upstream_of_or_within IDA
ISO		 PMID:29453251
(PMID:29453251)		 RGD PMID:29453251 PMID:29453251 RGD:42721986 NCBI chr 7:120,493,447...120,714,720
Ensembl chr 7:118,613,889...118,834,353 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO
IEA		 (PMID:22499991)
GO_REF:0000107		 RGD
Ensembl		 PMID:22499991 GO_REF:0000107 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
positive regulation of vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcr4 C-X-C motif chemokine receptor 4 IMP RGD PMID:24955809 RGD:11352686 NCBI chr13:42,630,383...42,634,288
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (PMID:18579532) RGD PMID:18579532 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:30052311 RGD:155663378 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Mir451a microRNA 451a involved_in ISO (PMID:25006399) RGD PMID:25006399 NCBI chr10:63,459,569...63,459,640
Ensembl chr10:62,961,520...62,961,591 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 involved_in ISO
IEA		 (PMID:16774925)
GO_REF:0000107		 RGD
Ensembl		 PMID:16774925 GO_REF:0000107 NCBI chr 1:63,935,627...64,064,952
Ensembl chr 1:55,262,530...55,391,693 		JBrowse link
G Vegfb vascular endothelial growth factor B involved_in ISO (PMID:16109918) RGD PMID:16109918 NCBI chr 1:213,601,570...213,607,254
Ensembl chr 1:204,172,225...204,177,944 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO
IEA		 (PMID:25656649)
GO_REF:0000107		 RGD
Ensembl		 PMID:25656649 GO_REF:0000107 NCBI chr14:84,604,623...84,609,707
Ensembl chr14:80,390,643...80,395,693 		JBrowse link
vascular wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipor2 adiponectin receptor 2 involved_in ISO
IEA		 (PMID:24742672)
GO_REF:0000107		 RGD
Ensembl		 PMID:24742672 GO_REF:0000107 NCBI chr 4:154,195,440...154,261,141
Ensembl chr 4:152,524,623...152,559,355 		JBrowse link
G Cd34 CD34 molecule involved_in ISO (PMID:20354148) RGD PMID:20354148 NCBI chr13:109,008,786...109,029,317
Ensembl chr13:106,480,043...106,499,832 		JBrowse link
G Gata2 GATA binding protein 2 involved_in ISO
IEA		 (PMID:22499991)
GO_REF:0000107		 RGD
Ensembl		 PMID:22499991 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Hpse heparanase involved_in IEA
ISO		 GO_REF:0000107
(PMID:15793281)		 Ensembl
RGD		 PMID:15793281 GO_REF:0000107 NCBI chr14:9,200,971...9,241,377
Ensembl chr14:8,896,593...8,937,010 		JBrowse link
G Kdr kinase insert domain receptor involved_in IEA
ISO		 GO_REF:0000107
(PMID:22499991), (PMID:23688497)		 Ensembl
RGD		 PMID:22499991 PMID:23688497 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Mcam melanoma cell adhesion molecule involved_in ISO
IEA		 (PMID:20354148)
GO_REF:0000107		 RGD
Ensembl		 PMID:20354148 GO_REF:0000107 NCBI chr 8:53,376,225...53,384,407
Ensembl chr 8:44,479,376...44,487,571 		JBrowse link
G Ndnf neuron-derived neurotrophic factor involved_in ISO (PMID:24706764) RGD PMID:24706764 NCBI chr 4:96,274,147...96,311,624
Ensembl chr 4:94,944,360...94,981,873 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:3522129 (PMID:32394795)		 Ensembl
RGD		 PMID:32394795 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in IEA
ISO		 GO_REF:0000107
(PMID:23688497)		 Ensembl
RGD		 PMID:23688497 GO_REF:0000107 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure formation involved in morphogenesis 1381
        angiogenesis 643
          angiogenesis involved in wound healing 33
            vascular wound healing + 23
Path 2
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure development 6646
        multicellular organism development 5353
          system development 4635
            circulatory system development 1387
              vasculature development 905
                blood vessel development 863
                  blood vessel morphogenesis 746
                    angiogenesis 643
                      angiogenesis involved in wound healing 33
                        vascular wound healing + 23
paths to the root