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ONTOLOGY REPORT - ANNOTATIONS


Term:retina development in camera-type eye
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Accession:GO:0060041 term browser browse the term
Definition:The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms:exact_synonym: retina development in camera-style eye
 related_synonym: retinal development
 alt_id: GO:0002073



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retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACHE acetylcholinesterase (Yt blood group) involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15579149) Ensembl
MGI
PMID:15579149 GO_REF:0000107 NCBI chr 7:92,915,065...92,922,079
Ensembl chr 7:106,311,944...106,318,184
JBrowse link
G ACTB actin beta ISO RGD PMID:22916200 RGD:9587758
G AHI1 Abelson helper integration site 1 acts_upstream_of_or_within ISO (PMID:20592197) MGI PMID:20592197 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) MGI PMID:31302159 NCBI chr2A:73,438,657...73,671,313
Ensembl chr2A:74,926,650...75,152,139
JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:10982921) MGI PMID:10982921 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709
JBrowse link
G ARSG arylsulfatase G acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:26975023) MGI
Ensembl
PMID:26975023 GO_REF:0000107 NCBI chr17:62,195,977...62,379,362
Ensembl chr17:67,588,347...67,768,454
JBrowse link
G BAX BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9699561) Ensembl
MGI
PMID:9699561 GO_REF:0000107 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
JBrowse link
G BBS1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31302159) MGI
Ensembl
PMID:31302159 GO_REF:0000107 NCBI chr11:61,868,257...61,892,473
Ensembl chr11:65,192,355...65,216,274
JBrowse link
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31302159), (PMID:36125046), (PMID:36700052) MGI
Ensembl
PMID:31302159 PMID:36125046 PMID:36700052 GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956
JBrowse link
G BMP4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12654290) Ensembl
MGI
PMID:12654290 GO_REF:0000107 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072
JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) MGI PMID:28057640 NCBI chr19:5,708,211...5,753,178
Ensembl chr19:6,629,287...6,674,699
JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr  X:41,504,804...41,533,501
Ensembl chr  X:49,356,994...49,385,678
JBrowse link
G CALB1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814
JBrowse link
G CEP290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) MGI PMID:21052544 PMID:31302159 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
G CFD complement factor D acts_upstream_of_or_within ISO (PMID:28057640) MGI PMID:28057640
G CFH complement factor H acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
ISO (PMID:17921253), (PMID:28057640)
(PMID:30705315)
(PMID:28057640)
MGI PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186
JBrowse link
G CLCN2 chloride voltage-gated channel 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 3:181,383,608...181,399,200
Ensembl chr 3:189,862,489...189,881,049
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15565184)
(PMID:21052544)
Ensembl
MGI
PMID:15565184 PMID:21052544 GO_REF:0000107 NCBI chr 8:5,587,875...5,606,883
Ensembl chr 8:1,658,694...1,700,754
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21124780) MGI PMID:21124780 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517
JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22447858), (PMID:25147295) Ensembl
MGI
PMID:22447858 PMID:25147295 GO_REF:0000107 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G CRX cone-rod homeobox acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr19:44,828,119...44,856,284 JBrowse link
G DCLK1 doublecortin like kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:16,988,340...17,342,911
Ensembl chr13:35,425,382...35,768,935
JBrowse link
G DCX doublecortin involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr  X:100,411,871...100,529,833
Ensembl chr  X:110,875,032...110,988,582
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G DRAM2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:37691820) MGI
Ensembl
PMID:37691820 GO_REF:0000107 NCBI chr 1:113,763,013...113,786,070
Ensembl chr 1:126,569,722...126,583,883
JBrowse link
G DRD4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chr11:640,401...646,775 JBrowse link
G DTNBP1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256
JBrowse link
G ELP6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27715390) MGI
Ensembl
PMID:27715390 GO_REF:0000107 NCBI chr 3:47,392,777...47,415,830
Ensembl chr 3:48,496,874...48,515,090
JBrowse link
G GDNF glial cell derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544)
(PMID:21124780)
Ensembl
MGI
PMID:21052544 PMID:21124780 GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNB1 G protein subunit beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 1:490,415...596,826
Ensembl chr 1:1,647,340...1,701,614
JBrowse link
G GRM6 glutamate metabotropic receptor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 5:174,142,754...174,156,294
Ensembl chr 5:181,434,031...181,447,341
JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chr17:13,046,329...13,054,236
Ensembl chr17:13,211,784...13,219,609
JBrowse link
G HPCA hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chr 1:32,176,465...32,185,133
Ensembl chr 1:33,363,673...33,371,524
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922
JBrowse link
G IL4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
JBrowse link
G IMPDH1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 7:120,382,719...120,400,417
Ensembl chr 7:133,036,328...133,053,580
JBrowse link
G IMPDH2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 3:48,948,965...48,954,276
Ensembl chr 3:50,030,303...50,035,676
JBrowse link
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15345036) Ensembl
MGI
PMID:15345036 GO_REF:0000107 NCBI chr17:70,789,922...70,803,791
Ensembl chr17:76,356,142...76,370,117
JBrowse link
G LAMA1 laminin subunit alpha 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr18:7,159,568...7,335,363
Ensembl chr18:9,482,895...9,656,800
JBrowse link
G LAMB2 laminin subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19907020) Ensembl
MGI
PMID:19907020 GO_REF:0000107 NCBI chr 3:49,045,419...49,057,340
Ensembl chr 3:50,125,460...50,137,074
JBrowse link
G LAMC3 laminin subunit gamma 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19907020) Ensembl
MGI
PMID:19907020 GO_REF:0000107 NCBI chr 9:102,131,594...102,213,829
Ensembl chr 9:130,777,182...130,861,292
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chr22:14,077,463...14,929,250 JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19146846) Ensembl
MGI
PMID:19146846 GO_REF:0000107 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796
JBrowse link
G LIF LIF interleukin 6 family cytokine ISO RGD PMID:16643897 RGD:2326157 NCBI chr22:11,276,576...11,282,972
Ensembl chr22:29,078,862...29,095,608
JBrowse link
G LPCAT1 lysophosphatidylcholine acyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 Ensembl chr 5:1,503,853...1,544,741 JBrowse link
G MAX MYC associated factor X ISO RGD PMID:14603520 RGD:2316820 NCBI chr14:45,588,366...45,683,828
Ensembl chr14:64,535,120...64,562,671
JBrowse link
G MDM1 Mdm1 nuclear protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21052544) MGI
TreeGrafter
PMID:21052544 GO_REF:0000118 NCBI chr12:65,803,548...65,841,404
Ensembl chr12:68,588,541...68,626,326
JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr2A:89,977,226...90,109,970
Ensembl chr2A:113,056,852...113,162,052
JBrowse link
G MFRP membrane frizzled-related protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr11:114,179,998...114,187,716
Ensembl chr11:118,107,317...118,115,050
JBrowse link
G MFSD8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:27654426) MGI
Ensembl
PMID:27654426 GO_REF:0000107 NCBI chr 4:120,087,477...120,137,550
Ensembl chr 4:131,391,361...131,439,590
JBrowse link
G MUSK muscle associated receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chr 9:81,814,766...81,947,341
Ensembl chr 9:109,980,748...110,107,480
JBrowse link
G MYH10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:11283949), (PMID:9356462) MGI PMID:9356462 PMID:11283949 NCBI chr17:43,023,922...43,180,159
Ensembl chr17:47,761,322...47,911,192
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26607664) Ensembl
MGI
PMID:26607664 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9071226) Ensembl
MGI
PMID:9071226 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15728677) Ensembl
MGI
PMID:15728677 GO_REF:0000107 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090
JBrowse link
G NEUROD4 neuronal differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chr12:33,719,986...33,730,012 JBrowse link
G NFIA nuclear factor I A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31128945) Ensembl
MGI
PMID:31128945 GO_REF:0000107 NCBI chr 1:60,331,945...60,713,729
Ensembl chr 1:61,938,945...62,526,753
JBrowse link
G NFIB nuclear factor I B acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chr 9:13,923,516...14,376,264 JBrowse link
G NFIX nuclear factor I X acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chr19:12,557,020...12,660,316
Ensembl chr19:13,327,690...13,402,406
JBrowse link
G NOS3 nitric oxide synthase 3 ISO RGD PMID:16639026 RGD:7771562 NCBI chr 7:142,577,334...142,600,702
Ensembl chr 7:154,730,009...154,755,233
JBrowse link
G NPHP1 nephrocystin 1 involved_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr2A:91,520,612...91,602,187
Ensembl chr2A:111,625,267...111,706,205
JBrowse link
G NPHP4 nephrocystin 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 1:4,620,593...4,756,363
Ensembl chr 1:5,878,739...6,012,864
JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11997145)
(PMID:16702404)
Ensembl
MGI
PMID:11997145 PMID:16702404 GO_REF:0000107 NCBI chr 6:105,965,478...105,988,213
Ensembl chr 6:109,831,223...109,851,436
JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12407160)
(PMID:21052544)
Ensembl
MGI
PMID:12407160 PMID:21052544 GO_REF:0000107 NCBI chr15:50,759,707...50,767,703
Ensembl chr15:69,525,351...69,533,034
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 ISO RGD PMID:22714110 RGD:124713571 NCBI chr2B:43,584,835...43,593,118
Ensembl chr2B:160,826,091...160,837,162
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25542970) Ensembl
MGI
PMID:25542970 GO_REF:0000107 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678
JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chr 3:190,890,242...190,995,133
Ensembl chr 3:201,207,607...201,312,358
JBrowse link
G OPN4 opsin 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21124780) Ensembl
MGI
PMID:21124780 GO_REF:0000107 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G PAX4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chr 7:119,605,924...119,613,579
Ensembl chr 7:132,260,859...132,268,516
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19146846) RGD
MGI
Ensembl
PMID:19012751 PMID:19146846 GO_REF:0000107 RGD:2311636 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G PDE6A phosphodiesterase 6A acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 5:145,283,505...145,369,596
Ensembl chr 5:151,294,041...151,375,832
JBrowse link
G PDE6B phosphodiesterase 6B acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 Ensembl chr 4:646,516...701,680 JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883
JBrowse link
G PFDN5 prefoldin subunit 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21052544) MGI
Ensembl
PMID:21052544 GO_REF:0000107 NCBI chr12:35,454,680...35,458,667
Ensembl chr12:36,235,552...36,239,706
JBrowse link
G POU4F2 POU class 4 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9630743)
(PMID:8637595)
Ensembl
MGI
PMID:8637595 PMID:9630743 GO_REF:0000107 NCBI chr 4:138,969,157...138,972,730
Ensembl chr 4:150,626,392...150,629,961
JBrowse link
G PRPH2 peripherin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15964665)
(PMID:28053051)
(PMID:21052544)
Ensembl
MGI
PMID:15964665 PMID:21052544 PMID:28053051 GO_REF:0000107 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011
JBrowse link
G PTN pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:11562477) MGI PMID:11562477 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G RD3 RD3 regulator of GUCY2D involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
TreeGrafter
MGI
PMID:21052544 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:187,044,054...187,060,441
Ensembl chr 1:191,907,989...191,924,365
JBrowse link
G RET ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chr10:40,050,396...40,103,629
Ensembl chr10:43,249,468...43,284,331
JBrowse link
G RHO rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RNPEP arginyl aminopeptidase ISO RGD PMID:15500823 RGD:2325937 NCBI chr 1:177,579,349...177,602,865
Ensembl chr 1:181,880,404...181,903,906
JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:28053051) Ensembl
MGI
PMID:28053051 GO_REF:0000107 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (PMID:23652001) UniProt PMID:23652001 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
TreeGrafter
MGI
PMID:21052544 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G RPL24 ribosomal protein L24 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10049578), (PMID:9331275) Ensembl
MGI
PMID:9331275 PMID:10049578 GO_REF:0000107 NCBI chr 3:98,769,830...98,775,532
Ensembl chr 3:105,449,515...105,455,135
JBrowse link
G RRM1 ribonucleotide reductase catalytic subunit M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chr11:3,956,528...3,999,205
Ensembl chr11:4,068,119...4,110,474
JBrowse link
G SCAPER S-phase cyclin A associated protein in the ER acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:28794130) MGI
Ensembl
PMID:28794130 GO_REF:0000107 NCBI chr15:55,263,970...55,830,877
Ensembl chr15:74,855,612...75,377,042
JBrowse link
G SERPINF1 serpin family F member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chr17:1,745,597...1,761,399
Ensembl chr17:1,638,556...1,653,568
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080
JBrowse link
G SLC1A1 solute carrier family 1 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,323,124...4,420,193
Ensembl chr 9:4,511,491...4,608,337
JBrowse link
G SLC38A8 solute carrier family 38 member 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:37862028) MGI
Ensembl
PMID:37862028 GO_REF:0000107 NCBI chr16:64,676,787...64,709,083
Ensembl chr16:84,020,458...84,053,458
JBrowse link
G SLC4A5 solute carrier family 4 member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21705333) Ensembl
MGI
PMID:21705333 GO_REF:0000107 NCBI chr2A:74,288,481...74,428,014
Ensembl chr2A:75,798,510...75,888,448
JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20159594) Ensembl
MGI
PMID:20159594 GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810
JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20711468) Ensembl
MGI
PMID:20711468 GO_REF:0000107 NCBI chr11:63,120,913...63,132,831
Ensembl chr11:66,429,435...66,441,327
JBrowse link
G TENT2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr 5:35,622,645...35,696,451
Ensembl chr 5:35,893,841...35,966,932
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354
JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24791901) MGI
Ensembl
PMID:24791901 GO_REF:0000107 NCBI chr14:56,216,214...56,513,718
Ensembl chr14:75,058,897...75,356,494
JBrowse link
G TUB TUB bipartite transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr11:8,135,981...8,223,414
Ensembl chr11:7,882,680...7,969,434
JBrowse link
G TULP1 TUB like protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160
JBrowse link
G UCHL3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr13:56,776,436...56,832,539
Ensembl chr13:75,549,647...75,878,673
JBrowse link
G USH2A usherin ISO RGD PMID:12160733 RGD:634438 NCBI chr 1:191,193,130...191,994,664
Ensembl chr 1:196,048,086...196,850,216
JBrowse link
G VAX2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10595508) Ensembl
MGI
PMID:10595508 GO_REF:0000107 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr20:21,260,871...21,347,430
Ensembl chr20:21,222,138...21,308,561
JBrowse link
G ZNF513 zinc finger protein 513 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,381,102...27,384,980
Ensembl chr2A:27,469,512...27,473,068
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARHL2 BarH like homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14998930) Ensembl
MGI
PMID:14998930 GO_REF:0000107 NCBI chr 1:93,373,317...93,378,667
Ensembl chr 1:92,121,017...92,126,036
JBrowse link
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G FOXN4 forkhead box N4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15363391) Ensembl
MGI
PMID:15363391 GO_REF:0000107 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025
JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of
IEA
ISO
(PMID:15976303) Ensembl
MGI
PMID:15976303 GO_REF:0000107 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:16038893) Ensembl
MGI
PMID:16038893 GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245
JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NEUROD4 neuronal differentiation 4 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chr12:33,719,986...33,730,012 JBrowse link
G PTF1A pancreas associated transcription factor 1a acts_upstream_of_or_within
involved_in
ISO (PMID:17301087)
(PMID:17075007)
MGI
UniProt
PMID:17075007 PMID:17301087 NCBI chr10:23,356,165...23,359,579 JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (PMID:23652001) UniProt PMID:23652001 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) MGI PMID:18973577 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20300562) Ensembl
MGI
PMID:20300562 GO_REF:0000107 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21646512) Ensembl
MGI
PMID:21646512 GO_REF:0000107 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18582859) Ensembl
MGI
PMID:18582859 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:36125046) MGI
Ensembl
PMID:36125046 GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23580486)
(PMID:29518352)
Ensembl
MGI
PMID:23580486 PMID:29518352 GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26607664) Ensembl
MGI
PMID:26607664 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9071226) Ensembl
MGI
PMID:9071226 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19754878) Ensembl
MGI
PMID:19754878 GO_REF:0000107 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G PROX1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763
JBrowse link
G RBP4 retinol binding protein 4 involved_in ISO (PMID:10469643) BHF-UCL PMID:10469643 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15976303) Ensembl
MGI
PMID:15976303 GO_REF:0000107 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16038893) Ensembl
MGI
PMID:16038893 GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
G POU4F2 POU class 4 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:138,969,157...138,972,730
Ensembl chr 4:150,626,392...150,629,961
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983
JBrowse link
G ATOH7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:21441919) MGI PMID:21441919 NCBI chr10:64,714,546...64,716,341 JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chr12:87,107,900...87,229,514
Ensembl chr12:90,427,560...90,495,320
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 3:10,260,556...10,643,346
Ensembl chr 3:10,611,619...10,738,006
JBrowse link
G ATP2B3 ATPase plasma membrane Ca2+ transporting 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chr  X:143,068,171...143,133,479
Ensembl chr  X:152,955,109...153,019,445
JBrowse link
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 1:179,231,712...179,348,759
Ensembl chr 1:183,580,773...183,639,882
JBrowse link
G BSG basigin (Ok blood group) involved_in ISO (PMID:10967074), (PMID:11273674), (PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 Ensembl chr19:539,815...551,456 JBrowse link
G CASP2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chr 7:135,283,072...135,307,855
Ensembl chr 7:147,773,749...147,792,958
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:20589906 RGD:405650605 NCBI chr14:55,832,570...55,835,984
Ensembl chr14:74,676,316...74,679,766
JBrowse link
G GPM6A glycoprotein M6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:167,826,285...168,194,244
Ensembl chr 4:180,059,938...180,428,459
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15716406) Ensembl
MGI
PMID:15716406 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G OPTN optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chr10:13,104,335...13,142,725
Ensembl chr10:13,077,345...13,115,773
JBrowse link
G PER1 period circadian regulator 1 ISO RGD PMID:20589906 RGD:405650605 NCBI chr17:43,502,080...43,518,098
Ensembl chr17:48,234,360...48,250,391
JBrowse link
G PER2 period circadian regulator 2 ISO RGD PMID:20589906 RGD:405650605 NCBI chr2B:125,477,021...125,521,577
Ensembl chr2B:244,328,122...244,371,040
JBrowse link
G PSEN1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876
JBrowse link
G RAB11FIP4 RAB11 family interacting protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:25,265,176...25,411,124
Ensembl chr17:26,006,251...26,146,947
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:2631392 RGD:9585660 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G SLC17A6 solute carrier family 17 member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chr11:22,350,537...22,392,009
Ensembl chr11:22,258,011...22,301,944
JBrowse link
G SLC17A7 solute carrier family 17 member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chr19:46,443,076...46,455,195
Ensembl chr19:55,365,811...55,377,438
JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chr12:97,935,177...98,001,240
Ensembl chr12:101,342,113...101,405,844
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
G SMARCD3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (PMID:9217007) BHF-UCL PMID:9217007 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLX1 distal-less homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,382,156...59,387,100
Ensembl chr2B:176,839,721...176,843,909
JBrowse link
G DLX2 distal-less homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,396,841...59,400,297
Ensembl chr2B:176,853,913...176,857,079
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145
JBrowse link
G TGIF2 TGFB induced factor homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18926818) Ensembl
MGI
PMID:18926818 GO_REF:0000107 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15316081), (PMID:16885194) Ensembl
MGI
PMID:15316081 PMID:16885194 GO_REF:0000107 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G DSCAM DS cell adhesion molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18216855) Ensembl
MGI
PMID:18216855 GO_REF:0000107 NCBI chr21:26,366,295...27,192,617
Ensembl chr21:39,699,077...40,524,164
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,871,584...19,881,817
Ensembl chr15:38,121,574...38,129,471
JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in ISO (PMID:17075007) UniProt PMID:17075007 NCBI chr10:23,356,165...23,359,579 JBrowse link
G SIX3 SIX homeobox 3 involved_in ISO (PMID:20890044) UniProt PMID:20890044 NCBI chr2A:45,038,634...45,072,867 JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF4 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23932931) Ensembl
MGI
PMID:23932931 GO_REF:0000107 NCBI chr18:30,495,149...30,818,358
Ensembl chr18:34,068,123...34,374,372
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL6 ARF like GTPase 6 acts_upstream_of_or_within ISO (PMID:22139371)
(PMID:20333246)
MGI PMID:20333246 PMID:22139371 NCBI chr 3:94,832,577...94,870,531
Ensembl chr 3:101,519,718...101,556,419
JBrowse link
G CALB1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814
JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17234588) Ensembl
MGI
PMID:17234588 GO_REF:0000107 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G FAT3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chr11:87,242,937...87,921,955 JBrowse link
G FJX1 four-jointed box kinase 1 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chr11:35,588,579...35,592,107 JBrowse link
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chr22:14,077,463...14,929,250 JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MEGF11 multiple EGF like domains 11 involved_in ISO (PMID:22407321) UniProt PMID:22407321 NCBI chr15:44,836,750...45,208,674
Ensembl chr15:63,116,564...63,204,508
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:29654250) Ensembl
MGI
PMID:29654250 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G PROM1 prominin 1 involved_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in ISO (PMID:17075007) UniProt PMID:17075007 NCBI chr10:23,356,165...23,359,579 JBrowse link
G PTPRM protein tyrosine phosphatase receptor type M involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:5,879,556...6,706,824
Ensembl chr18:8,206,677...9,030,286
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22605914) Ensembl
MGI
PMID:22605914 GO_REF:0000107 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RS1 retinoschisin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11983912)
(PMID:15326152)
Ensembl
MGI
PMID:11983912 PMID:15326152 GO_REF:0000107 NCBI chr  X:11,259,222...11,282,289
Ensembl chr  X:18,624,687...18,657,315
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952
JBrowse link
G SLC1A1 solute carrier family 1 member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19766171) Ensembl
MGI
PMID:19766171 GO_REF:0000107 NCBI chr 9:4,323,124...4,420,193
Ensembl chr 9:4,511,491...4,608,337
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,376,157...50,406,740
Ensembl chr 6:51,635,899...51,664,691
JBrowse link
G TSPAN12 tetraspanin 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:112,790,606...112,861,730
Ensembl chr 7:125,478,472...125,549,091
JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17234588), (PMID:25147295) Ensembl
MGI
PMID:17234588 PMID:25147295 GO_REF:0000107 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:32265257) Ensembl
MGI
PMID:32265257 GO_REF:0000107 NCBI chr 3:98,325,379...98,418,344
Ensembl chr 3:105,005,553...105,097,902
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MAN2A1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (PMID:20144606) MGI PMID:20144606 NCBI chr 5:105,034,104...105,219,011
Ensembl chr 5:110,841,349...111,025,187
JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27008858) Ensembl
ARUK-UCL
PMID:27008858 GO_REF:0000107 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15716406) Ensembl
MGI
PMID:15716406 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15728677) Ensembl
MGI
PMID:15728677 GO_REF:0000107 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507
JBrowse link
G PROM1 prominin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PTF1A pancreas associated transcription factor 1a acts_upstream_of_or_within ISO (PMID:17301087) MGI PMID:17301087 NCBI chr10:23,356,165...23,359,579 JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20300562) Ensembl
MGI
PMID:20300562 GO_REF:0000107 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10725384) MGI
Ensembl
PMID:10725384 GO_REF:0000107 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:16651659) MGI PMID:16651659 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662
JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:16854970), (PMID:8630490) MGI PMID:8630490 PMID:16854970 NCBI chr14:54,797,734...54,821,081 JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B involved_in ISO (PMID:19903896) BHF-UCL PMID:19903896 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063
JBrowse link
G ACVRL1 activin A receptor like type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:36,839,869...36,856,351
Ensembl chr12:37,615,888...37,631,691
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19005183) Ensembl
MGI
PMID:19005183 GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824
JBrowse link
G FZD4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25083995), (PMID:25414188)
(PMID:23217714)
Ensembl
MGI
PMID:23217714 PMID:25083995 PMID:25414188 GO_REF:0000107 NCBI chr11:81,973,680...82,007,733
Ensembl chr11:85,611,989...85,616,065
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21212189) Ensembl
MGI
PMID:21212189 GO_REF:0000107 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chr22:14,077,463...14,929,250 JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:22272305)
(PMID:25083995)
MGI PMID:22272305 PMID:25083995 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23217714)
(PMID:15716406), (PMID:18978344), (PMID:28575130), (PMID:29654250)
(PMID:25083995), (PMID:25414188)
(PMID:15716406), (PMID:29715368)
Ensembl
MGI
PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G NRP1 neuropilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25414188) Ensembl
MGI
PMID:25414188 GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648
JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097
JBrowse link
G PDGFRB platelet derived growth factor receptor beta involved_in ISO (PMID:11239463)
(PMID:14624252)
UniProt PMID:11239463 PMID:14624252 NCBI chr 5:145,538,330...145,580,312
Ensembl chr 5:151,543,891...151,585,530
JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20300562) Ensembl
MGI
PMID:20300562 GO_REF:0000107 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:29715368) Ensembl
MGI
PMID:29715368 GO_REF:0000107 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link
G VSTM4 V-set and transmembrane domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31698979) Ensembl
MGI
PMID:31698979 GO_REF:0000107 NCBI chr10:45,128,625...45,240,558 JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF15 Rho guanine nucleotide exchange factor 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22535667) Ensembl
MGI
PMID:22535667 GO_REF:0000107 NCBI chr17:43,336,764...43,349,787
Ensembl chr17:48,070,223...48,082,499
JBrowse link
G CLIC4 chloride intracellular channel 4 acts_upstream_of_or_within ISO (PMID:19197003) MGI PMID:19197003 NCBI chr 1:23,947,030...24,042,139
Ensembl chr 1:24,975,260...25,017,904
JBrowse link
G FZD4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19837032) Ensembl
TreeGrafter
MGI
PMID:19837032 GO_REF:0000107 GO_REF:0000118 NCBI chr11:81,973,680...82,007,733
Ensembl chr11:85,611,989...85,616,065
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:19837032)
(PMID:18263894)
(PMID:11956231)
RGD
MGI
PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 RGD:40902996 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19837032)
(PMID:18978344)
Ensembl
MGI
PMID:18978344 PMID:19837032 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648
JBrowse link
G RHOJ ras homolog family member J involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22535667) Ensembl
MGI
PMID:22535667 GO_REF:0000107 NCBI chr14:43,783,185...43,872,000
Ensembl chr14:62,039,418...62,126,908
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16249514) Ensembl
MGI
PMID:16249514 GO_REF:0000107 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) MGI PMID:24467707 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245
JBrowse link
G IRX5 iroquois homeobox 5 acts_upstream_of_or_within ISO (PMID:18322081) MGI PMID:18322081 NCBI chr16:35,164,884...35,168,189
Ensembl chr16:54,272,412...54,275,124
JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745
JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:28199486) Ensembl
MGI
PMID:28199486 GO_REF:0000107 NCBI chr 6:103,899,410...103,923,389
Ensembl chr 6:107,773,229...107,796,815
JBrowse link
G VSX1 visual system homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18322081)
(PMID:14745032)
(PMID:15043821)
Ensembl
MGI
PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 NCBI chr20:25,011,149...25,025,545
Ensembl chr20:25,361,216...25,372,705
JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:8630490) MGI PMID:8630490 NCBI chr14:54,797,734...54,821,081 JBrowse link
G ZHX2 zinc fingers and homeoboxes 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:119,473,607...119,668,790
Ensembl chr 8:122,401,567...122,404,080
JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL4A1 collagen type IV alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:91,282,617...91,440,187
Ensembl chr13:110,407,009...110,562,529
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824
JBrowse link
G FZD4 frizzled class receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:81,973,680...82,007,733
Ensembl chr11:85,611,989...85,616,065
JBrowse link
G LAMA1 laminin subunit alpha 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr18:7,159,568...7,335,363
Ensembl chr18:9,482,895...9,656,800
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18978344), (PMID:22394677), (PMID:28575130) Ensembl
MGI
PMID:18978344 PMID:22394677 PMID:28575130 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16249514) Ensembl
MGI
PMID:16249514 GO_REF:0000107 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855
JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (PMID:20203194) MGI PMID:20203194 NCBI chr14:82,188,126...82,190,220 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17065522), (PMID:21052544) Ensembl
MGI
PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr 5:64,673,392...65,116,259
Ensembl chr 5:69,724,767...70,158,761
JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21052544) Ensembl
MGI
PMID:21052544 GO_REF:0000107 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654
JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G THRB thyroid hormone receptor beta involved_in
acts_upstream_of
IEA
ISO
(PMID:20203194) Ensembl
MGI
PMID:20203194 GO_REF:0000107 NCBI chr 3:24,024,025...24,401,024
Ensembl chr 3:24,346,824...24,564,960
JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901
JBrowse link
G USH1C USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:17,548,501...17,598,923
Ensembl chr11:17,233,854...17,284,256
JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:36125046) MGI
Ensembl
PMID:36125046 GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19815523) Ensembl
MGI
PMID:19815523 GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19815523) Ensembl
MGI
PMID:19815523 GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:16452096) Ensembl
MGI
PMID:16452096 GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:23844226), (PMID:25991857) MGI PMID:23844226 PMID:25991857 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
G CLDN19 claudin 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:42,032,999...42,040,006
Ensembl chr 1:43,408,876...43,417,448
JBrowse link
G CLDN3 claudin 3 involved_in ISO (PMID:27593915) ARUK-UCL PMID:27593915 Ensembl chr 7:80,924,731...80,925,393 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18582859) Ensembl
MGI
PMID:18582859 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
G MED1 mediator complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118
JBrowse link
G MFSD2A MFSD2 lysolipid transporter A, lysophospholipid involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27008858) Ensembl
ARUK-UCL
PMID:27008858 GO_REF:0000107 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9071226) Ensembl
MGI
PMID:9071226 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G PAX2 paired box 2 involved_in ISO (PMID:8951055) DFLAT PMID:8951055 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028
JBrowse link
G SLC38A8 solute carrier family 38 member 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:37862028) MGI
Ensembl
PMID:37862028 GO_REF:0000107 NCBI chr16:64,676,787...64,709,083
Ensembl chr16:84,020,458...84,053,458
JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20159594) Ensembl
MGI
PMID:20159594 GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810
JBrowse link
G TMEM135 transmembrane protein 135 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:33064130) Ensembl
MGI
PMID:33064130 GO_REF:0000107 NCBI chr11:82,089,010...82,360,744
Ensembl chr11:85,696,632...85,966,778
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr2A:73,438,657...73,671,313
Ensembl chr2A:74,926,650...75,152,139
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15173597) Ensembl
MGI
PMID:15173597 GO_REF:0000107 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chr20:59,385,608...59,392,078 JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17712420) Ensembl
MGI
PMID:17712420 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11694879) Ensembl
TreeGrafter
MGI
PMID:11694879 GO_REF:0000107 GO_REF:0000118 NCBI chr14:4,858,105...4,891,207
Ensembl chr14:22,982,367...22,998,187
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10516311) Ensembl
MGI
PMID:10516311 GO_REF:0000107 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678
JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G RPGRIP1L RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174
JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:166,914,164...166,952,937
Ensembl chr 3:174,980,176...175,007,421
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr15:9,492,500...9,653,644
Ensembl chr15:28,530,878...28,690,947
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:36125046) MGI
Ensembl
PMID:36125046 GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956
JBrowse link
G CNTF ciliary neurotrophic factor involved_in
acts_upstream_of
IEA
ISO
(PMID:15207851) Ensembl
MGI
PMID:15207851 GO_REF:0000107 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19815523) Ensembl
MGI
PMID:19815523 GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19815523) Ensembl
MGI
PMID:19815523 GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G NDP norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9071226) Ensembl
MGI
PMID:9071226 GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067
JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G RORB RAR related orphan receptor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25296752) Ensembl
MGI
PMID:25296752 GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of
acts_upstream_of_or_within
ISO (PMID:19490914) MGI PMID:19490914
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chr17:66,028,737...66,034,122 JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15207851) Ensembl
MGI
PMID:15207851 GO_REF:0000107 NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26607664) Ensembl
MGI
PMID:26607664 GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G RHO rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:32960171) Ensembl
MGI
PMID:32960171 GO_REF:0000107 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19380
    developmental process 6649
      anatomical structure development 6235
        retina development in camera-type eye 223
          negative regulation of retina development in camera-type eye + 0
          neural retina development + 103
          positive regulation of retina development in camera-type eye + 0
          regulation of retina development in camera-type eye + 1
          retina morphogenesis in camera-type eye + 83
          retina vasculature development in camera-type eye + 22
          retinal pigment epithelium development 11
Path 2
Term Annotations click to browse term
  biological_process 19380
    developmental process 6649
      anatomical structure development 6235
        multicellular organism development 5009
          system development 4352
            sensory system development 476
              visual system development 470
                eye development 468
                  camera-type eye development 423
                    retina development in camera-type eye 223
                      negative regulation of retina development in camera-type eye + 0
                      neural retina development + 103
                      positive regulation of retina development in camera-type eye + 0
                      regulation of retina development in camera-type eye + 1
                      retina morphogenesis in camera-type eye + 83
                      retina vasculature development in camera-type eye + 22
                      retinal pigment epithelium development 11
paths to the root