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ONTOLOGY REPORT - ANNOTATIONS

Term:pharyngeal system development
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Accession:GO:0060037 term browser browse the term
Definition:The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the structure it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.


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pharyngeal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO MGI:2386570|MGI:2651395 (PMID:17078885) RGD PMID:17078885 NCBI chr 3:63,387,378...63,506,980 JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO UniProtKB:P23359 (PMID:10079236) RGD PMID:10079236 NCBI chr 8:76,517,164...76,639,925 JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P49003 (PMID:10079236) RGD PMID:10079236 NCBI chr 3:182,059,318...182,135,273 JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158947 (PMID:12950083)		 Ensembl
RGD		 PMID:12950083 GO_REF:0000107 NCBI chr 5:155,361,031...155,462,723 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780|MGI:98493|MGI:99604 (PMID:21364285) RGD PMID:21364285 NCBI chr 5:4,863,501...5,101,483 JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:102780|MGI:109344|MGI:98493 (PMID:21364285) RGD PMID:21364285 NCBI chr 1:244,584,477...244,590,578 JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (PMID:37041148)
(PMID:24650709), (PMID:37041148)		 RGD PMID:24650709 PMID:37041148 NCBI chr 4:102,933,487...102,937,655 JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (PMID:18955134) RGD PMID:18955134 NCBI chr17:68,643,760...68,666,000 JBrowse link
G Hoxa2 homeobox A2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25889273)		 Ensembl
RGD		 PMID:25889273 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970 JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q02248 (PMID:17519333)		 Ensembl
RGD		 PMID:17519333 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442 JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:97351 (PMID:11390666)		 Ensembl
RGD		 PMID:11390666 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458 JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within
involved_in		 ISO MGI:97350 (PMID:11390666)
(PMID:9486544), (PMID:9545560), (PMID:9621431)		 RGD PMID:9486544 PMID:9545560 PMID:9621431 PMID:11390666 NCBI chr15:50,852,965...50,857,060 JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:44,473,851...44,476,443 JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) RGD PMID:19666519 NCBI chr13:106,163,103...106,358,979 JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379), (PMID:8981943) RGD PMID:8681379 PMID:8981943 NCBI chr17:1,548,449...1,613,461 JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in ISO (PMID:21177346) RGD PMID:21177346 NCBI chr11:33,648,471...33,656,587 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO MGI:109344|MGI:98493|MGI:99604 (PMID:21364285)
(PMID:16530750)		 RGD PMID:16530750 PMID:21364285 NCBI chr 6:97,482,617...97,487,853 JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:16530750) RGD PMID:16530750 NCBI chr 6:91,802,328...91,816,002 JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:21177346)
MGI:102780|MGI:109344|MGI:3046793|MGI:99604 (PMID:16141220), (PMID:21364285)
(PMID:14585638)		 UniProt
RGD		 PMID:14585638 PMID:16141220 PMID:21177346 PMID:21364285 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) RGD PMID:15459098 NCBI chr10:71,177,082...71,186,275 JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2386570|MGI:2388050 (PMID:17078885)		 Ensembl
RGD		 PMID:17078885 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371 JBrowse link
pharyngeal arch artery morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf4 adhesion G protein-coupled receptor F4 acts_upstream_of_or_within ISO MGI:2182928 (PMID:28806758) RGD PMID:28806758 NCBI chr 9:25,769,265...25,800,438 JBrowse link
G Adgrf5 adhesion G protein-coupled receptor F5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1925499 (PMID:28806758)		 Ensembl
RGD		 PMID:28806758 GO_REF:0000107 NCBI chr 9:17,517,596...17,624,107 JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15070745)		 Ensembl
RGD		 PMID:15070745 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (PMID:15073157) RGD PMID:15073157 NCBI chr16:9,740,751...9,786,861 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in
NOT|involved_in		 ISO (PMID:12441304)
(PMID:19409885)		 RGD PMID:12441304 PMID:19409885 NCBI chr 9:68,685,942...68,801,353 JBrowse link
G Edn1 endothelin 1 involved_in ISO MGI:1857637|MGI:3773698|MGI:4867385 (PMID:23933587) RGD PMID:23933587 NCBI chr17:22,660,799...22,666,687 JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:1857473|MGI:1857637|MGI:2687362|MGI:3773698|MGI:4867385 (PMID:23933587), (PMID:31219639)		 Ensembl
RGD		 PMID:23933587 PMID:31219639 GO_REF:0000107 NCBI chr19:47,137,360...47,207,961 JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) RGD PMID:17286298 NCBI chr 1:165,631,462...165,650,430 JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20122914)		 Ensembl
RGD		 PMID:20122914 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176 JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32203821)
GO_REF:0000107		 RGD
Ensembl		 PMID:32203821 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614 JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:17218603)		 Ensembl
RGD		 PMID:17218603 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501 JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:3605892 (PMID:23319608) RGD PMID:23319608 NCBI chr 8:28,438,370...28,535,071 JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (PMID:11390347) RGD PMID:11390347 NCBI chr13:98,160,075...98,261,771 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    multicellular organismal process 8969
      multicellular organism development 5329
        system development 4611
          pharyngeal system development 34
            pharyngeal arch artery morphogenesis 13
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        multicellular organism development 5329
          embryo development 1369
            embryo development ending in birth or egg hatching 896
              chordate embryonic development 879
                pharyngeal system development 34
                  pharyngeal arch artery morphogenesis 13
paths to the root