Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:copper ion homeostasis
go back to main search page
Accession:GO:0055070 term browser browse the term
Definition:Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
Synonyms:broad_synonym: copper homeostasis


show annotations for term's descendants           Sort by:
copper ion homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd1 copper metabolism domain containing 1 involved_in ISO
IBA
IEA		 (PMID:14685266)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107		 RGD
GO_Central
InterPro
Ensembl		 PMID:14685266 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr14:101,081,667...101,185,738
Ensembl chr14:96,880,463...96,984,501 		JBrowse link
G Cox10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 acts_upstream_of_or_within ISO
IEA		 (PMID:36301669)
GO_REF:0000107		 RGD
Ensembl		 PMID:36301669 GO_REF:0000107 NCBI chr10:49,130,209...49,242,009
Ensembl chr10:48,630,676...48,746,667 		JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr10:52,243,664...52,256,250
Ensembl chr10:51,744,656...51,757,237 		JBrowse link
intracellular copper ion homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in IDA PMID:18160489 UniProt PMID:18160489 RGD:42722002 NCBI chr 9:84,117,222...84,125,939
Ensembl chr 9:76,668,554...76,676,924 		JBrowse link
G Ankrd9 ankyrin repeat domain 9 involved_in ISO (PMID:24522796) RGD PMID:24522796 NCBI chr 6:135,827,355...135,830,002
Ensembl chr 6:129,998,486...130,008,923 		JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO MGI:2137246 (PMID:10526140) RGD PMID:10526140 NCBI chr 8:37,857,407...37,920,487
Ensembl chr 8:29,599,230...29,661,855 		JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2136847|MGI:88047 (PMID:10526140), (PMID:15447675)		 UniProt
RGD		 PMID:10526140 PMID:15447675 GO_REF:0000024 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Arf1 ARF GTPase 1 involved_in ISO (PMID:21034850) RGD PMID:21034850 NCBI chr10:44,497,543...44,513,994
Ensembl chr10:43,997,986...44,014,434 		JBrowse link
G Atox1 antioxidant 1 copper chaperone acts_upstream_of_or_within ISO
IEA		 MGI:2158341 (PMID:11391006)
GO_REF:0000107		 RGD
Ensembl		 PMID:11391006 GO_REF:0000107 NCBI chr10:40,065,525...40,080,627
Ensembl chr10:39,564,857...39,579,950 		JBrowse link
G Atp7a ATPase copper transporting alpha involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 GO_REF:0000024
(PMID:16397091), (PMID:28389643)
MGI:1856097|MGI:1856098|MGI:1856099|MGI:1856101|MGI:1856322|MGI:1856323|MGI:1856324|MGI:1856325|MGI:1856466|MGI:1858103|MGI:3588774|MGI:97171|MGI:97172 (PMID:10332039), (PMID:11311799), (PMID:16338116), (PMID:1779648), (PMID:187892), (PMID:27591), (PMID:3674914), (PMID:4858102), (PMID:564942), (PMID:571898), (PMID:573617), (PMID:573619), (PMID:6685755), (PMID:7197928), (PMID:7688531), (PMID:7873696), (PMID:8025644), (PMID:8096378), (PMID:8640230), (PMID:9321757), (PMID:9686356)
(PMID:25639447)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:27591 PMID:187892 PMID:564942 PMID:571898 PMID:573617 More... GO_REF:0000024 GO_REF:0000033 MGI:60964 MGI:61151 MGI:63873 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Atp7b ATPase copper transporting beta acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 MGI:1856220|MGI:2158253 (PMID:10441329), (PMID:11085952), (PMID:1588441), (PMID:2845190), (PMID:6863890), (PMID:8040371), (PMID:8257436), (PMID:9392450), (PMID:9484715)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:1588441 PMID:2845190 PMID:6863890 PMID:8040371 PMID:8257436 More... GO_REF:0000033 GO_REF:0000107 NCBI chr16:76,654,725...76,726,092
Ensembl chr16:69,951,778...70,023,636 		JBrowse link
G Ccdc22 coiled-coil domain containing 22 involved_in ISO
IEA		 (PMID:25355947)
GO_REF:0000107		 RGD
Ensembl		 PMID:25355947 GO_REF:0000107 NCBI chr  X:17,570,184...17,582,130
Ensembl chr  X:14,898,296...14,910,244 		JBrowse link
G Cox19 cytochrome c oxidase assembly factor COX19 involved_in ISO (PMID:23345593) RGD PMID:23345593 NCBI chr12:20,417,389...20,426,868
Ensembl chr12:15,303,551...15,313,014 		JBrowse link
G Cp ceruloplasmin involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:14623105)
(PMID:36261001)		 UniProt
RGD		 PMID:14623105 PMID:36261001 GO_REF:0000024 NCBI chr 2:104,368,336...104,427,119
Ensembl chr 2:102,439,624...102,498,075 		JBrowse link
G Prnd prion like protein doppel involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
(PMID:12482851)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:12482851 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:139,666,383...139,671,647
Ensembl chr 3:119,213,429...119,218,745 		JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO MGI:2176228|MGI:2182095|MGI:2386742|MGI:5758867 (PMID:25683716), (PMID:28647369), (PMID:28973536) RGD PMID:25683716 PMID:28647369 PMID:28973536 NCBI chr10:52,243,664...52,256,250
Ensembl chr10:51,744,656...51,757,237 		JBrowse link
G Sco2 synthesis of cytochrome C oxidase 2 involved_in IEA GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104
G Slc30a10 solute carrier family 30, member 10 NOT|involved_in ISO (PMID:25319704) RGD PMID:25319704 NCBI chr13:99,529,664...99,584,442
Ensembl chr13:96,998,143...97,009,103 		JBrowse link
G Slc31a1 solute carrier family 31 member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1333844 (PMID:24167251)
GO_REF:0000107		 RGD
Ensembl		 PMID:24167251 GO_REF:0000107 NCBI chr 5:80,830,574...80,859,810
Ensembl chr 5:75,814,743...75,844,228 		JBrowse link
G Slc31a2 solute carrier family 31 member 2 acts_upstream_of_or_within ISO
IEA		 MGI:1333843 (PMID:24167251)
GO_REF:0000107		 RGD
Ensembl		 PMID:24167251 GO_REF:0000107 NCBI chr 5:80,753,589...80,764,126
Ensembl chr 5:75,738,024...75,748,542 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    homeostatic process 2032
      chemical homeostasis 1241
        inorganic ion homeostasis 605
          copper ion homeostasis 19
            intracellular copper ion homeostasis 17
Path 2
Term Annotations click to browse term
  biological_process 20567
    homeostatic process 2032
      chemical homeostasis 1241
        monoatomic ion homeostasis 687
          monoatomic cation homeostasis 673
            copper ion homeostasis 19
              intracellular copper ion homeostasis 17
paths to the root