ONTOLOGY REPORT - ANNOTATIONS
Term: pigment cell differentiation
Accession: GO:0050931
browse the term
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte.
Comment: Note that the chromatophore mentioned here is distinct from the pigment bearing structure found in certain photosynthetic bacteria and cyanobacteria. It is also different from the plant chromoplast, which is also sometimes called a chromatophore.
Synonyms: exact_synonym: chromatophore differentiation; pigmented cell differentiation
alt_id: GO:0043357; GO:0043358
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Cd63
Cd63 molecule
involved_in
ISO
(PMID:21962903)
RGD
PMID:21962903
NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
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Ankrd27
ankyrin repeat domain 27
involved_in
ISO
(PMID:21187829)
RGD
PMID:21187829
NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
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Ap1g1
adaptor related protein complex 1 subunit gamma 1
involved_in
ISO
(PMID:22511774)
RGD
PMID:22511774
NCBI chr19:54,654,101...54,740,586
Ensembl chr19:37,744,633...37,829,167
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Ap1m1
adaptor related protein complex 1 subunit mu 1
involved_in
ISO IEA
(PMID:19841138) GO_REF:0000107
RGD Ensembl
PMID:19841138
GO_REF:0000107
NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,584,730...17,602,403
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Ap3d1
adaptor related protein complex 3 subunit delta 1
involved_in
ISO
(PMID:22511774)
RGD
PMID:22511774
NCBI chr 7:9,620,909...9,656,350
Ensembl chr 7:8,970,291...9,005,643
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Bloc1s3
biogenesis of lysosomal organelles complex-1, subunit 3
involved_in
ISO
(PMID:17182842)
RGD
PMID:17182842
NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
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Bloc1s5
biogenesis of lysosomal organelles complex 1 subunit 5
involved_in
ISO
(PMID:17182842)
RGD
PMID:17182842
NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
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Bloc1s6
biogenesis of lysosomal organelles complex 1 subunit 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:17182842)
UniProt RGD
PMID:17182842
GO_REF:0000024
NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
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Cd63
Cd63 molecule
involved_in
ISO IEA ISS
(PMID:21962903) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:21962903
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
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Rab32
RAB32, member RAS oncogene family
involved_in
ISO
(PMID:22511774)
RGD
PMID:22511774
NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
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Rab38
RAB38, member RAS oncogene family
involved_in
ISO
(PMID:22511774)
RGD
PMID:22511774
NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
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Sod2
superoxide dismutase 2
acts_upstream_of_or_within
ISO
MGI:1857344 (PMID:15205258)
RGD
PMID:15205258
NCBI chr 1:50,043,323...50,050,168
Ensembl chr 1:47,636,528...47,645,189
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Adamts20
ADAM metallopeptidase with thrombospondin type 1 motif, 20
acts_upstream_of
ISO
MGI:1916320|MGI:3766915 (PMID:18454205)
RGD
PMID:18454205
NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
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Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
acts_upstream_of
ISO
MGI:2660628 (PMID:18454205)
RGD
PMID:18454205
NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158305 (PMID:16427619) MGI:104554|MGI:2156165|MGI:2158305 (PMID:11709185), (PMID:12086670), (PMID:8758925)
Ensembl RGD
PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Bloc1s6
biogenesis of lysosomal organelles complex 1 subunit 6
acts_upstream_of_or_within
ISO
MGI:1856982 (PMID:2379821)
RGD
PMID:2379821
NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
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Cited1
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
involved_in
ISO IBA ISS
(PMID:8901575) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:8901575
GO_REF:0000024 GO_REF:0000033
NCBI chr X:71,390,328...71,395,023
Ensembl chr X:67,350,373...67,355,162
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Cited1l1
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:204,760,742...204,761,351
Ensembl chr 1:204,760,188...204,761,398
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Edn3
endothelin 3
acts_upstream_of_or_within
ISO
(PMID:9012511)
RGD
PMID:9012511
NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093
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Ednrb
endothelin receptor type B
acts_upstream_of_or_within
IDA ISO
MGI:1856148 (PMID:2379821), (PMID:9012511)
RGD
PMID:2379821 PMID:9012511 PMID:11709437
RGD:628459
NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO ISS
(PMID:28964717) GO_REF:0000024
RGD UniProt
PMID:28964717
GO_REF:0000024
NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715
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ENSRNOG00000066743
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr 1:204,760,188...204,761,398
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Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:3720956 (PMID:18397875)
RGD
PMID:18397875
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
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Hps1
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
acts_upstream_of_or_within
ISO
MGI:1856712 (PMID:11836498)
RGD
PMID:11836498
NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
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Hps4
HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
acts_upstream_of_or_within
ISO
MGI:1856931 (PMID:11836498)
RGD
PMID:11836498
NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
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Kit
KIT proto-oncogene receptor tyrosine kinase
involved_in
ISO
(PMID:15768389)
RGD
PMID:15768389
NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
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Lrmda
leucine rich melanocyte differentiation associated
involved_in
ISO IBA
(PMID:23395477) GO_REF:0000033
RGD GO_Central
PMID:23395477
GO_REF:0000033
NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749
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Mef2c
myocyte enhancer factor 2C
involved_in
ISS ISO
GO_REF:0000024 (PMID:21610032)
UniProt RGD
PMID:21610032
GO_REF:0000024
NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880
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Mitf
melanocyte inducing transcription factor
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821) GO_REF:0000033
Ensembl RGD GO_Central
PMID:2379821 PMID:12086670
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145
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Mlph
melanophilin
acts_upstream_of_or_within
ISO
MGI:1856674 (PMID:11504925), (PMID:2379821)
RGD
PMID:2379821 PMID:11504925
NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
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Mreg
melanoregulin
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1856847 (PMID:2379821), (PMID:7828830)
GO_Central RGD
PMID:2379821 PMID:7828830
GO_REF:0000033
NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
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Myo5a
myosin VA
acts_upstream_of_or_within
ISO
MGI:1856004 (PMID:1996138), (PMID:2379821), (PMID:7828830)
RGD
PMID:1996138 PMID:2379821 PMID:7828830
NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
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Oca2
OCA2 melanosomal transmembrane protein
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1856114 (PMID:2379821) GO_REF:0000033
RGD GO_Central
PMID:2379821
GO_REF:0000033
NCBI chr 1:116,252,026...116,581,838
Ensembl chr 1:107,116,278...107,446,074
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Olr59
olfactory receptor 59
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:27226631)
Ensembl UniProt RGD
PMID:27226631
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179
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Rab27a
RAB27A, member RAS oncogene family
acts_upstream_of_or_within
ISO
MGI:1856656 (PMID:2379821)
RGD
PMID:2379821
MGI:52947
NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
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Sox10
SRY-box transcription factor 10
acts_upstream_of_or_within
ISO
MGI:3701358 (PMID:16790476)
RGD
PMID:16790476
NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544
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Tyrp1
tyrosinase-related protein 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1855962 (PMID:2379821)
GO_Central RGD
PMID:2379821
GO_REF:0000033
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Adamtsl4
ADAMTS-like 4
acts_upstream_of_or_within
ISO
(PMID:26405179)
RGD
PMID:26405179
NCBI chr 2:183,235,634...183,247,091
Ensembl chr 2:183,235,646...183,246,848
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Cd63
Cd63 molecule
involved_in
ISO ISS
(PMID:21962903) GO_REF:0000024
RGD UniProt
PMID:21962903
GO_REF:0000024
NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
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Adamts20
ADAM metallopeptidase with thrombospondin type 1 motif, 20
acts_upstream_of_or_within
ISO
MGI:1916320|MGI:3766915 (PMID:18454205)
RGD
PMID:18454205
NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
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Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
acts_upstream_of_or_within
ISO
MGI:2660628 (PMID:18454205)
RGD
PMID:18454205
NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158305 (PMID:16427619)
Ensembl RGD
PMID:16427619
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Kitlg
KIT ligand
acts_upstream_of_or_within
ISO
(PMID:16427619)
RGD
PMID:16427619
NCBI chr 7:36,782,621...36,863,796
Ensembl chr 7:34,896,053...34,977,214
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Zeb2
zinc finger E-box binding homeobox 2
involved_in
ISO
(PMID:24769727)
RGD
PMID:24769727
NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157
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Bloc1s5
biogenesis of lysosomal organelles complex 1 subunit 5
involved_in
ISO
(PMID:17182842)
RGD
PMID:17182842
NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251
G
Bloc1s6
biogenesis of lysosomal organelles complex 1 subunit 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:17182842)
UniProt RGD
PMID:17182842
GO_REF:0000024
NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308
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Gna11
G protein subunit alpha 11
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2682213 (PMID:15322542)
Ensembl RGD
PMID:15322542
GO_REF:0000107
NCBI chr 7:8,814,285...8,828,628
Ensembl chr 7:8,162,750...8,179,812
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Gnaq
G protein subunit alpha q
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2681766 (PMID:15322542)
Ensembl RGD
PMID:15322542
GO_REF:0000107
NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672
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