ONTOLOGY REPORT - ANNOTATIONS |
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Term: | extracellular matrix binding |
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Accession: | GO:0050840
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browse the term
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Definition: | Binding to a component of the extracellular matrix. |
Synonyms: | exact_synonym: | extracellular matrix constituent binding |
| related_synonym: | adhesive extracellular matrix constituent |
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Adamts15 |
ADAM metallopeptidase with thrombospondin type 1 motif, 15 |
enables |
ISO |
(PMID:24220035) |
RGD |
PMID:24220035 |
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NCBI chr 8:37,566,064...37,589,446
Ensembl chr 8:29,307,865...29,331,249
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Adamts5 |
ADAM metallopeptidase with thrombospondin type 1 motif, 5 |
enables |
ISO |
(PMID:24220035) |
RGD |
PMID:24220035 |
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NCBI chr11:38,486,945...38,533,516
Ensembl chr11:25,000,637...25,047,205
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Adgrg1 |
adhesion G protein-coupled receptor G1 |
enables |
IEA ISO ISS |
GO_REF:0000107 (PMID:18509043) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:18509043 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr19:10,009,983...10,047,138
Ensembl chr19:10,003,975...10,041,108
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Bgn |
biglycan |
enables |
IEA ISO |
GO_REF:0000107 (PMID:18757743) |
Ensembl RGD |
PMID:18757743 |
GO_REF:0000107 |
NCBI chr X:156,348,633...156,360,797
Ensembl chr X:151,197,273...151,209,461
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Ccn1 |
cellular communication network factor 1 |
enables |
ISO |
(PMID:18757743) |
RGD |
PMID:18757743 |
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NCBI chr 2:237,222,730...237,225,689
Ensembl chr 2:234,562,408...234,565,484
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Cd248 |
CD248 molecule |
enables |
IBA ISO |
GO_REF:0000033 (PMID:22740442) |
GO_Central RGD |
PMID:22740442 |
GO_REF:0000033 |
NCBI chr 1:211,803,052...211,805,616
Ensembl chr 1:202,373,676...202,376,240
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Clec14a |
C-type lectin domain containing 14A |
enables |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 6:81,616,414...81,619,556
Ensembl chr 6:75,881,473...75,884,612
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Dcn |
decorin |
enables |
IEA ISO |
GO_REF:0000107 (PMID:18757743) |
Ensembl RGD |
PMID:18757743 |
GO_REF:0000107 |
NCBI chr 7:34,167,973...34,208,004
Ensembl chr 7:32,281,252...32,321,270
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Dmp1 |
dentin matrix acidic phosphoprotein 1 |
enables |
IEA ISO IBA |
GO_REF:0000107 (PMID:18757743) GO_REF:0000033 |
Ensembl RGD GO_Central |
PMID:18757743 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr14:5,833,111...5,867,154
Ensembl chr14:5,528,431...5,539,323
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Eln |
elastin |
enables |
IEA ISO |
GO_REF:0000107 (PMID:18757743) |
Ensembl RGD |
PMID:18757743 |
GO_REF:0000107 |
NCBI chr12:27,604,983...27,648,413
Ensembl chr12:21,968,544...22,011,928
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Fbln2 |
fibulin 2 |
enables |
IBA ISO |
GO_REF:0000033 (PMID:18757743) |
GO_Central RGD |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr 4:123,704,289...123,763,857
Ensembl chr 4:123,704,373...123,763,948
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Itga2b |
integrin subunit alpha 2b |
enables |
ISO |
(PMID:15031111) |
RGD |
PMID:15031111 |
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NCBI chr10:87,908,697...87,926,225
Ensembl chr10:87,408,536...87,426,168
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Itgav |
integrin subunit alpha V |
enables |
ISO |
(PMID:22505472) |
RGD |
PMID:22505472 |
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NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639
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Itgb3 |
integrin subunit beta 3 |
enables |
ISO IEA |
(PMID:22505472) GO_REF:0000107 |
RGD Ensembl |
PMID:22505472 |
GO_REF:0000107 |
NCBI chr10:90,009,927...90,067,787
Ensembl chr10:89,509,989...89,564,679
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Nid1 |
nidogen 1 |
enables |
ISO |
(PMID:18757743) |
RGD |
PMID:18757743 |
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NCBI chr17:93,069,013...93,142,416
Ensembl chr17:86,085,077...86,158,267
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Olfml2a |
olfactomedin-like 2A |
enables |
ISO |
(PMID:15836428) |
RGD |
PMID:15836428 |
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NCBI chr 3:22,688,590...22,717,917
Ensembl chr 3:22,688,598...22,717,909
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Olfml2b |
olfactomedin-like 2B |
enables |
ISO |
(PMID:15836428) |
RGD |
PMID:15836428 |
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NCBI chr13:85,402,151...85,439,342
Ensembl chr13:82,869,433...82,906,607
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Sdc1 |
syndecan 1 |
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TAS |
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RGD |
PMID:12135485 |
RGD:625750 |
NCBI chr 6:37,282,041...37,304,503
Ensembl chr 6:31,562,739...31,585,264
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Smoc1 |
SPARC related modular calcium binding 1 |
enables |
IBA ISO |
GO_REF:0000033 (PMID:18757743) |
GO_Central RGD |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr 6:106,432,592...106,593,956
Ensembl chr 6:100,701,346...100,862,699
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Smoc2 |
SPARC related modular calcium binding 2 |
enables |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:63,935,627...64,064,952
Ensembl chr 1:55,262,530...55,391,693
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Sparc |
secreted protein acidic and cysteine rich |
enables |
ISO IBA |
(PMID:18757743) GO_REF:0000033 |
RGD GO_Central |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr10:40,017,065...40,038,816
Ensembl chr10:39,516,406...39,538,396
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Sparcl1 |
SPARC like 1 |
enables |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr14:5,937,484...5,968,532
Ensembl chr14:5,632,569...5,663,865
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Spock2 |
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 |
enables |
ISO IBA |
(PMID:18757743) GO_REF:0000033 |
RGD GO_Central |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr20:28,580,262...28,607,198
Ensembl chr20:28,033,475...28,064,272
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Spock3 |
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 |
enables |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr16:26,382,895...26,815,943
Ensembl chr16:26,383,383...26,815,205
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Spp1 |
secreted phosphoprotein 1 |
enables |
IBA ISO |
GO_REF:0000033 (PMID:18757743) |
GO_Central RGD |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr14:5,613,569...5,620,695
Ensembl chr14:5,308,885...5,315,162
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Ssc5d |
scavenger receptor cysteine rich family member with 5 domains |
enables |
IBA ISO |
GO_REF:0000033 (PMID:21217009) |
GO_Central RGD |
PMID:21217009 |
GO_REF:0000033 |
NCBI chr 1:77,920,781...77,939,284
Ensembl chr 1:68,891,949...68,909,743
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Tgfbi |
transforming growth factor, beta induced |
enables |
ISO |
(PMID:18757743) |
RGD |
PMID:18757743 |
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NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240
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Thbs1 |
thrombospondin 1 |
enables |
ISO |
(PMID:18757743) |
RGD |
PMID:18757743 |
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NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:105,056,292...105,071,440
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Thsd1 |
thrombospondin type 1 domain containing 1 |
enables |
ISO |
(PMID:27895300) |
RGD |
PMID:27895300 |
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NCBI chr16:69,771,408...69,804,844
Ensembl chr16:69,771,408...69,801,504
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Vtn |
vitronectin |
enables |
IBA ISO |
GO_REF:0000033 (PMID:18757743) |
GO_Central RGD |
PMID:18757743 |
GO_REF:0000033 |
NCBI chr10:63,892,782...63,895,862
Ensembl chr10:63,394,719...63,397,810
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Zan |
zonadhesin |
enables |
ISO |
(PMID:7592795) |
RGD |
PMID:7592795 |
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NCBI chr12:19,215,018...19,322,789
Ensembl chr12:19,215,102...19,271,240
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Anxa2 |
annexin A2 |
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IPI |
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RGD |
PMID:23525114 |
RGD:12911212 |
NCBI chr 8:78,986,252...79,022,638
Ensembl chr 8:70,105,253...70,141,658
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Ambp |
alpha-1-microglobulin/bikunin precursor |
enables |
ISO ISS |
(PMID:22096585) GO_REF:0000024 |
RGD UniProt |
PMID:22096585 |
GO_REF:0000024 |
NCBI chr 5:81,583,621...81,593,938
Ensembl chr 5:76,568,094...76,578,331
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Chadl |
chondroadherin-like |
enables |
ISO |
(PMID:25451920) |
RGD |
PMID:25451920 |
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NCBI chr 7:115,085,447...115,097,565
Ensembl chr 7:113,210,748...113,217,272
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Tnxb |
tenascin XB |
enables |
ISO |
(PMID:16278880) |
RGD |
PMID:16278880 |
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Ache |
acetylcholinesterase |
enables |
ISO IEA |
(PMID:12524166) PR:P02469 (PMID:15474030) GO_REF:0000107 |
RGD Ensembl |
PMID:12524166 PMID:15474030 |
GO_REF:0000107 |
NCBI chr12:25,042,882...25,050,608
Ensembl chr12:19,407,360...19,413,651
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Adam9 |
ADAM metallopeptidase domain 9 |
enables |
ISO |
(PMID:15361064) |
RGD |
PMID:15361064 |
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NCBI chr16:73,725,186...73,804,284
Ensembl chr16:67,022,655...67,100,917
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Adgrg6 |
adhesion G protein-coupled receptor G6 |
enables |
IBA ISO |
GO_REF:0000033 (PMID:25695270) |
GO_Central RGD |
PMID:25695270 |
GO_REF:0000033 |
NCBI chr 1:8,812,889...8,954,239
Ensembl chr 1:8,812,904...8,954,123
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Agrn |
agrin |
enables |
IEA |
GO_REF:0000002 |
InterPro |
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GO_REF:0000002 |
NCBI chr 5:172,031,528...172,064,429
Ensembl chr 5:166,749,310...166,786,003
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Bcam |
basal cell adhesion molecule (Lutheran blood group) |
enables |
ISO IEA |
(PMID:16236823) GO_REF:0000107 |
RGD Ensembl |
PMID:16236823 |
GO_REF:0000107 |
NCBI chr 1:79,415,016...79,429,403
Ensembl chr 1:79,415,017...79,429,403
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C20h6orf15 |
similar to human chromosome 6 open reading frame 15 |
enables |
ISO |
(PMID:18757743) |
RGD |
PMID:18757743 |
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NCBI chr20:3,172,330...3,173,886
Ensembl chr20:3,172,330...3,173,886
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Ctss |
cathepsin S |
enables |
ISO IEA |
(PMID:22952693) GO_REF:0000107 |
RGD Ensembl |
PMID:22952693 |
GO_REF:0000107 |
NCBI chr 2:185,775,316...185,803,440
Ensembl chr 2:183,086,437...183,114,483
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Dag1 |
dystroglycan 1 |
enables |
IDA ISO IBA |
(PMID:19155270) GO_REF:0000033 |
RGD GO_Central |
PMID:19155270 PMID:8996823 |
GO_REF:0000033, RGD:11541070 |
NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:108,890,929...108,952,325
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Fkrp |
fukutin related protein |
enables |
ISO |
(PMID:21224063) |
RGD |
PMID:21224063 |
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NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992
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Gpc1 |
glypican 1 |
enables |
ISS ISO IEA |
GO_REF:0000024 (PMID:20100867) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:20100867 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 9:100,843,645...100,871,458
Ensembl chr 9:93,396,234...93,424,047
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Itga2 |
integrin subunit alpha 2 |
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IMP |
binding by rat pheochromocytoma cells |
RGD |
PMID:10082128 |
RGD:2307408 |
NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481
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Itga3 |
integrin subunit alpha 3 |
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IMP IDA |
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RGD |
PMID:2223092 PMID:1835909 |
RGD:2325828, RGD:2325829 |
NCBI chr10:80,486,998...80,522,548
Ensembl chr10:79,990,161...80,022,118
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Itga6 |
integrin subunit alpha 6 |
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IPI |
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RGD |
PMID:16608848 |
RGD:1600017 |
NCBI chr 3:77,012,168...77,097,076
Ensembl chr 3:56,617,268...56,689,428
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Itga7 |
integrin subunit alpha 7 |
contributes_to |
IDA ISO |
(PMID:1839357), (PMID:9004048) |
RGD |
PMID:1839357 PMID:9004048 PMID:1315319 PMID:16282198 |
RGD:70774, RGD:1600026 |
NCBI chr 7:1,944,447...1,973,347
Ensembl chr 7:1,359,940...1,388,450
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Itga9 |
integrin subunit alpha 9 |
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IDA |
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RGD |
PMID:8020590 |
RGD:2317878 |
NCBI chr 8:118,307,424...118,615,527
Ensembl chr 8:118,307,381...118,613,754
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Itgb1 |
integrin subunit beta 1 |
contributes_to enables |
IMP ISO IEA IDA |
(PMID:1839357) GO_REF:0000107 |
RGD Ensembl |
PMID:1839357 PMID:18635166 PMID:1835909 |
GO_REF:0000107, RGD:2325290, RGD:2325829 |
NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195
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Lgals1 |
galectin 1 |
enables |
IDA IBA |
GO_REF:0000033 |
GO_Central RGD |
PMID:1955484 |
GO_REF:0000033, RGD:2316546 |
NCBI chr 7:112,365,695...112,368,801
Ensembl chr 7:110,481,392...110,488,345
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Lgals3 |
galectin 3 |
enables |
ISO IBA IEA |
(PMID:2402511) GO_REF:0000033 GO_REF:0000107 |
RGD GO_Central Ensembl |
PMID:2402511 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr15:23,099,795...23,111,731
Ensembl chr15:20,607,692...20,632,025
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Lrrc15 |
leucine rich repeat containing 15 |
enables |
ISO IEA |
(PMID:16098915) GO_REF:0000107 |
RGD Ensembl |
PMID:16098915 |
GO_REF:0000107 |
NCBI chr11:83,974,708...83,989,157
Ensembl chr11:70,469,804...70,484,267
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Lypd3 |
Ly6/Plaur domain containing 3 |
enables |
IDA |
PMID:15729693 |
MGI |
PMID:15729693 |
RGD:8553808 |
NCBI chr 1:80,226,449...80,230,901
Ensembl chr 1:80,226,449...80,230,901
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Ncl |
nucleolin |
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IDA |
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RGD |
PMID:8583499 |
RGD:9686427 |
NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136
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Nid1 |
nidogen 1 |
enables |
ISO |
(PMID:22952693) |
RGD |
PMID:22952693 |
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NCBI chr17:93,069,013...93,142,416
Ensembl chr17:86,085,077...86,158,267
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Plekha2 |
pleckstrin homology domain containing A2 |
enables |
ISO |
(PMID:19786618) |
RGD |
PMID:19786618 |
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NCBI chr16:66,938,684...67,000,661
Ensembl chr16:66,939,109...66,999,395
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Rpsa |
ribosomal protein SA |
enables |
ISO |
(PMID:8452943) |
RGD |
PMID:8452943 |
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NCBI chr 8:128,728,761...128,732,736
Ensembl chr 8:119,851,225...119,855,247
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Ssc5d |
scavenger receptor cysteine rich family member with 5 domains |
enables |
ISO |
(PMID:21217009) |
RGD |
PMID:21217009 |
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NCBI chr 1:77,920,781...77,939,284
Ensembl chr 1:68,891,949...68,909,743
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Thbs1 |
thrombospondin 1 |
enables |
ISO |
(PMID:6693501) |
RGD |
PMID:6693501 |
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NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:105,056,292...105,071,440
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Tinagl1 |
tubulointerstitial nephritis antigen-like 1 |
enables |
ISO IEA |
PR:P19137 (PMID:19587330) GO_REF:0000107 |
RGD Ensembl |
PMID:19587330 |
GO_REF:0000107 |
NCBI chr 5:142,513,710...142,523,730
Ensembl chr 5:142,513,714...142,523,720
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Dag1 |
dystroglycan 1 |
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IDA |
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RGD |
PMID:9153251 |
RGD:11541058 |
NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:108,890,929...108,952,325
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Nid1 |
nidogen 1 |
enables |
IEA ISO |
GO_REF:0000107 (PMID:17517882) |
Ensembl RGD |
PMID:17517882 |
GO_REF:0000107 |
NCBI chr17:93,069,013...93,142,416
Ensembl chr17:86,085,077...86,158,267
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Ntn4 |
netrin 4 |
enables |
ISO |
(PMID:17588941) |
RGD |
PMID:17588941 |
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NCBI chr 7:30,073,637...30,187,407
Ensembl chr 7:28,186,611...28,300,390
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Pxdn |
peroxidasin |
enables |
ISO |
(PMID:32485152) |
RGD |
PMID:32485152 |
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NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:46,580,761...46,658,345
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Shh |
sonic hedgehog signaling molecule |
enables |
IEA ISO ISS |
GO_REF:0000107 (PMID:15056720) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:15056720 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Slit2 |
slit guidance ligand 2 |
enables |
ISO IEA |
(PMID:10102268) GO_REF:0000107 |
RGD Ensembl |
PMID:10102268 |
GO_REF:0000107 |
NCBI chr14:66,829,661...67,168,517
Ensembl chr14:62,617,067...62,955,948
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Thbs4 |
thrombospondin 4 |
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IDA |
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RGD |
PMID:10956668 |
RGD:1580072 |
NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313
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Adamtsl2 |
ADAMTS-like 2 |
enables |
ISO |
PR:Q61554|PR:Q61555 (PMID:25762570) |
RGD |
PMID:25762570 |
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NCBI chr 3:30,795,882...30,832,635
Ensembl chr 3:10,404,626...10,434,554
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Adamtsl5 |
ADAMTS-like 5 |
enables |
ISO |
(PMID:23010571) |
RGD |
PMID:23010571 |
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NCBI chr 7:9,362,623...9,371,248
Ensembl chr 7:9,363,237...9,370,285
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Ltbp1 |
latent transforming growth factor beta binding protein 1 |
enables |
ISO IBA IEA |
(PMID:12429738) GO_REF:0000033 GO_REF:0000107 |
RGD GO_Central Ensembl |
PMID:12429738 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 6:25,781,625...26,177,346
Ensembl chr 6:20,029,629...20,425,349
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Ltbp2 |
latent transforming growth factor beta binding protein 2 |
enables |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 6:110,161,029...110,261,586
Ensembl chr 6:104,429,947...104,526,208
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Polr2a |
RNA polymerase II subunit A |
enables |
ISO |
(PMID:28945358) |
RGD |
PMID:28945358 |
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NCBI chr10:54,951,162...54,977,179
Ensembl chr10:54,452,441...54,478,455
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G |
Vwa1 |
von Willebrand factor A domain containing 1 |
enables |
ISO |
(PMID:23300779) |
RGD |
PMID:23300779 |
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NCBI chr 5:171,659,694...171,664,880
Ensembl chr 5:166,377,455...166,382,637
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Term paths to the root
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