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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of phagocytosis
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Accession:GO:0050764 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.
Synonyms:never_in_taxon: NCBITaxon:147537 ! Saccharomycotina


show annotations for term's descendants           Sort by:
regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcgr2a Fc gamma receptor 2A IMP RGD PMID:16482158 PMID:22184119 RGD:2293335, RGD:11041001 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO		 GO_REF:0000024
(PMID:11672534)		 UniProt
RGD		 PMID:11672534 GO_REF:0000024 NCBI chr 5:150,473,767...150,503,524
Ensembl chr 5:145,189,841...145,217,326 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO		 GO_REF:0000024
(PMID:11904303)		 UniProt
RGD		 PMID:11904303 GO_REF:0000024 NCBI chr 3:162,031,833...162,074,933
Ensembl chr 3:141,571,587...141,614,693 		JBrowse link
G Itgav integrin subunit alpha V involved_in ISO
IEA		 (PMID:10570297)
GO_REF:0000107		 RGD
Ensembl		 PMID:10570297 GO_REF:0000107 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Letmd1 LETM1 domain containing 1 involved_in ISO
IEA		 (PMID:31980577)
GO_REF:0000107		 RGD
Ensembl		 PMID:31980577 GO_REF:0000107 NCBI chr 7:133,461,920...133,476,592
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Pot1 protection of telomeres 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Prkcg protein kinase C, gamma acts_upstream_of_or_within ISO
IEA		 (PMID:15006698)
GO_REF:0000107		 RGD
Ensembl		 PMID:15006698 GO_REF:0000107 NCBI chr 1:74,748,272...74,777,611
Ensembl chr 1:65,832,855...65,859,384 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO
IEA		 (PMID:12100025)
GO_REF:0000107		 RGD
Ensembl		 PMID:12100025 GO_REF:0000107 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 TAS
IDA		 RGD PMID:10026214 PMID:12016218 RGD:1304217, RGD:1304245 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29662056)		 UniProt
RGD		 PMID:29662056 GO_REF:0000024 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19797524)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:19797524 GO_REF:0000024 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16982801)		 UniProt
RGD		 PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
negative regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO		 GO_REF:0000024
(PMID:26768664)		 UniProt
RGD		 PMID:26768664 GO_REF:0000024 NCBI chr10:100,858,924...100,875,111
Ensembl chr10:100,359,943...100,376,041 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:20826760) RGD PMID:20826760 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:25568335) RGD PMID:25568335 NCBI chr16:2,125,234...2,173,457
Ensembl chr16:2,121,255...2,166,692 		JBrowse link
negative regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
IEA
ISS		 (PMID:10961870)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10961870 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO
IEA		 (PMID:24035364)
GO_REF:0000107		 RGD
Ensembl		 PMID:24035364 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO
IEA		 (PMID:24035364)
GO_REF:0000107		 RGD
Ensembl		 PMID:24035364 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:1934631|MGI:3587769 (PMID:24035364) RGD PMID:24035364 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Cd47 Cd47 molecule involved_in IMP PMID:21401967 ARUK-UCL PMID:21401967 RGD:13792533 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Cnn2 calponin 2 acts_upstream_of_or_within ISO MGI:3820422 (PMID:18617524) RGD PMID:18617524 NCBI chr 7:10,363,141...10,370,312
Ensembl chr 7:9,712,516...9,719,656 		JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10884975 RGD:5134370 NCBI chr 8:66,925,650...66,944,861
Ensembl chr 8:58,029,749...58,048,292 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO
IEA		 (PMID:18276788)
GO_REF:0000107
MGI:1857883 (PMID:18276788)		 RGD
Ensembl		 PMID:18276788 GO_REF:0000107 NCBI chr 4:118,048,460...118,248,273
Ensembl chr 4:116,490,616...116,690,709 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within ISO MGI:1857166 (PMID:12385742) RGD PMID:12385742 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Mir181b1 microRNA 181b-1 involved_in ISO ENSEMBL_GeneID:ENSG00000171049 (PMID:25505240) RGD PMID:25505240 NCBI chr13:52,037,228...52,037,337
Ensembl chr13:49,485,688...49,485,797 		JBrowse link
G Mir181b2 microRNA 181b-2 involved_in ISO ENSEMBL_GeneID:ENSG00000171049 (PMID:25505240) RGD PMID:25505240 NCBI chr 3:43,026,666...43,026,753
Ensembl chr 3:22,616,948...22,617,035 		JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29378918)		 UniProt
Ensembl
RGD		 PMID:29378918 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:28,259,821...28,307,225
Ensembl chr 5:28,259,760...28,307,225 		JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO
ISS		 (PMID:26745724)
GO_REF:0000024		 RGD
UniProt		 PMID:26745724 GO_REF:0000024 NCBI chr 8:101,662,512...101,684,474
Ensembl chr 8:92,784,356...92,804,692 		JBrowse link
G Prtn3 proteinase 3 involved_in ISO (PMID:17712045) RGD PMID:17712045 NCBI chr 7:10,472,750...10,482,037
Ensembl chr 7:9,822,122...9,831,944 		JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:18056380 RGD:2292524 NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO
ISS		 (PMID:21347310)
GO_REF:0000024		 RGD
UniProt		 PMID:21347310 GO_REF:0000024 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:12654779 RGD:4144053 NCBI chr16:17,080,575...17,093,047
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:22630829) RGD PMID:22630829 NCBI chr 3:138,740,171...138,759,966
Ensembl chr 3:118,287,988...118,306,850 		JBrowse link
G Sirpa signal-regulatory protein alpha involved_in IMP
ISO		 PMID:21401967
(PMID:21401967)		 RGD PMID:21401967 PMID:21401967 RGD:13792533 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Snx3 sorting nexin 3 involved_in ISO
ISS		 (PMID:23237080)
GO_REF:0000024		 RGD
UniProt		 PMID:23237080 GO_REF:0000024 NCBI chr20:47,574,051...47,607,577
Ensembl chr20:45,992,720...46,025,379 		JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23303671), (PMID:28686317)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23303671 PMID:28686317 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA RGD PMID:16272332 RGD:1579756 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tlr2 toll-like receptor 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (PMID:22198949) RGD PMID:22198949 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
negative regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300a Cd300a molecule involved_in ISO (PMID:22302738) RGD PMID:22302738 NCBI chr10:100,428,826...100,441,693
Ensembl chr10:99,929,801...99,942,674 		JBrowse link
positive regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2 complement C2 involved_in ISO
IEA		 (PMID:19302245)
GO_REF:0000107		 RGD
Ensembl		 PMID:19302245 GO_REF:0000107 NCBI chr20:3,944,722...3,975,006
Ensembl chr20:3,951,474...3,976,505 		JBrowse link
G C3 complement C3 involved_in ISO
IEA		 (PMID:19302245)
GO_REF:0000107		 RGD
Ensembl		 PMID:19302245 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G C4a complement C4A involved_in ISO UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,010,306...4,024,707
Ensembl chr20:4,005,731...4,020,080 		JBrowse link
G C4b complement C4B involved_in ISO UniProtKB:P0C0L4|UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,201,979...4,216,292
Ensembl chr20:4,197,366...4,211,681 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 involved_in ISO
IEA		 (PMID:20691665)
GO_REF:0000107		 RGD
Ensembl		 PMID:20691665 GO_REF:0000107 NCBI chr10:67,503,077...67,504,875
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO		 GO_REF:0000024
(PMID:21865548), (PMID:26768664)		 UniProt
RGD		 PMID:21865548 PMID:26768664 GO_REF:0000024 NCBI chr10:100,858,924...100,875,111
Ensembl chr10:100,359,943...100,376,041 		JBrowse link
G Cfb complement factor B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:3,975,271...3,981,138
Ensembl chr20:3,951,474...3,976,505 		JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16908670)		 Alzheimers_University_of_Toronto
RGD		 PMID:16908670 GO_REF:0000024 NCBI chr 7:10,342,092...10,362,094
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO
IEA		 (PMID:24990881)
GO_REF:0000107		 RGD
Ensembl		 PMID:24990881 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO
IEA		 (PMID:25568335)
GO_REF:0000107		 RGD
Ensembl		 PMID:25568335 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754 		JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colec10 collectin subfamily member 10 involved_in ISO
IEA		 (PMID:24174618)
GO_REF:0000107		 RGD
Ensembl		 PMID:24174618 GO_REF:0000107 NCBI chr 7:87,634,686...87,695,465
Ensembl chr 7:85,744,895...85,805,675 		JBrowse link
G Colec11 collectin sub-family member 11 involved_in ISO (PMID:24174618) RGD PMID:24174618 NCBI chr 6:50,952,357...50,984,845
Ensembl chr 6:45,223,980...45,271,145 		JBrowse link
G Fcnb ficolin B involved_in ISO
IEA		 (PMID:16116205)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116205 GO_REF:0000107 NCBI chr 3:31,791,750...31,800,188
Ensembl chr 3:11,393,739...11,402,151 		JBrowse link
G Mbl2 mannose binding lectin 2 involved_in ISO (PMID:22966085) RGD PMID:22966085 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Myo18a myosin XVIIIa involved_in ISO
IEA		 (PMID:21123169)
GO_REF:0000107		 RGD
Ensembl		 PMID:21123169 GO_REF:0000107 NCBI chr10:62,654,218...62,755,465
Ensembl chr10:62,654,281...62,755,468 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
positive regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_REF:0000033
GO_REF:0000107		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 Ensembl chr 1:228,016,498...228,043,066 JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20495215), (PMID:27472885)		 Alzheimers_University_of_Toronto
RGD		 PMID:20495215 PMID:27472885 GO_REF:0000024 NCBI chr 7:10,342,092...10,362,094
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:17116687) RGD PMID:17116687 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Ager advanced glycosylation end product-specific receptor IMP immunofluorescence (MMO:0000662) RGD PMID:29753380 RGD:597538587 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Ahsg alpha-2-HS-glycoprotein involved_in ISO
ISS		 (PMID:12725640)
GO_REF:0000024		 RGD
UniProt		 PMID:12725640 GO_REF:0000024 NCBI chr11:91,625,975...91,632,583
Ensembl chr11:78,117,918...78,145,999 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA
ISS		 (PMID:20495215)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20495215 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:55,423,945...55,425,729
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoa2 apolipoprotein A2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20495215)		 UniProt
RGD		 PMID:20495215 GO_REF:0000024 NCBI chr13:86,176,767...86,178,819
Ensembl chr13:83,644,470...83,646,355 		JBrowse link
G Arap1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:35758026)		 Ensembl
RGD		 PMID:35758026 GO_REF:0000107 NCBI chr 1:165,160,701...165,226,219
Ensembl chr 1:155,748,652...155,814,184 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:17116687) RGD PMID:17116687 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Btk Bruton tyrosine kinase IMP RGD PMID:28352114 RGD:151665126 NCBI chr  X:102,016,070...102,055,448
Ensembl chr  X:97,722,802...97,761,853 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO
IEA		 MGI:1861799 (PMID:11901193)
GO_REF:0000107		 RGD
Ensembl		 PMID:11901193 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Calr calreticulin involved_in ISO
IEA		 (PMID:17187072)
GO_REF:0000107		 RGD
Ensembl		 PMID:17187072 GO_REF:0000107 NCBI chr19:40,213,367...40,218,262
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Camk1d calcium/calmodulin-dependent protein kinase ID involved_in ISO
IEA		 (PMID:15840691)
GO_REF:0000107		 RGD
Ensembl		 PMID:15840691 GO_REF:0000107 NCBI chr17:72,581,899...72,982,704
Ensembl chr17:72,581,979...72,980,556 		JBrowse link
G Cd36 CD36 molecule IMP RGD PMID:23238794 RGD:8696010 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd47 Cd47 molecule acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
IEA		 (PMID:14634079)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:14634079 PMID:23238794 GO_REF:0000002 GO_REF:0000033, RGD:8696010 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO
IEA		 (PMID:14707091)
GO_REF:0000107		 RGD
Ensembl		 PMID:14707091 GO_REF:0000107 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19358895)
GO_REF:0000107
(PMID:14707091)		 RGD
Ensembl		 PMID:14707091 PMID:19358895 GO_REF:0000107 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
G Cyba cytochrome b-245 alpha chain involved_in ISO
IEA		 (PMID:22423966)
GO_REF:0000107		 RGD
Ensembl		 PMID:22423966 GO_REF:0000107 NCBI chr19:67,396,143...67,404,214
Ensembl chr19:50,487,597...50,495,721 		JBrowse link
G Dnm2 dynamin 2 IMP RGD PMID:12802072 RGD:9685290 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in ISO
IEA		 (PMID:21892172)
GO_REF:0000107		 RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr10:19,331,412...19,748,987
Ensembl chr10:18,827,239...19,244,808 		JBrowse link
G Fcer1g Fc epsilon receptor Ig involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1857165|MGI:2384004 (PMID:11237803), (PMID:11901193), (PMID:11911823)		 GO_Central
RGD		 PMID:11237803 PMID:11901193 PMID:11911823 GO_REF:0000033 NCBI chr13:86,181,908...86,186,766
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr1a Fc gamma receptor 1A acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2664927|MGI:2679238 (PMID:11911823), (PMID:11911824), (PMID:9551950)
GO_REF:0000033		 RGD
GO_Central		 PMID:9551950 PMID:11911823 PMID:11911824 GO_REF:0000033 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (PMID:8769481), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9743367 PMID:9834201 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:8769481)
GO_REF:0000033		 RGD
GO_Central		 PMID:8769481 GO_REF:0000033 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Fpr2 formyl peptide receptor 2 involved_in ISO
IEA		 (PMID:25505240)
GO_REF:0000107		 RGD
Ensembl		 PMID:25505240 GO_REF:0000107 NCBI chr 1:67,449,637...67,458,272
Ensembl chr 1:58,776,752...58,786,019 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
IEA
ISS		 (PMID:18395422)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:18395422 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Gata2 GATA binding protein 2 involved_in IDA PMID:12933836 UniProt PMID:12933836 RGD:632788 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IMP RGD PMID:9886410 RGD:10059405 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:20368278) RGD PMID:20368278 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 acts_upstream_of_or_within ISO (PMID:11901193), (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9551950), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11901193 More... Ensembl chr 6:132,389,370...132,393,397 JBrowse link
G Il15 interleukin 15 involved_in ISO
IEA
ISS		 (PMID:15123770)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:15123770 GO_REF:0000024 GO_REF:0000107 NCBI chr19:42,536,160...42,611,349
Ensembl chr19:25,640,251...25,706,820 		JBrowse link
G Il15ra interleukin 15 receptor subunit alpha involved_in ISO
IEA		 (PMID:15123770)
GO_REF:0000107		 RGD
Ensembl		 PMID:15123770 GO_REF:0000107 NCBI chr17:71,712,141...71,742,072
Ensembl chr17:66,802,334...66,832,278 		JBrowse link
G Il2rb interleukin 2 receptor subunit beta involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15123770)		 UniProt
Ensembl
RGD		 PMID:15123770 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:111,913,828...111,928,537
Ensembl chr 7:110,033,341...110,048,054 		JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in ISO
IEA		 (PMID:15123770)
GO_REF:0000107		 RGD
Ensembl		 PMID:15123770 GO_REF:0000107 NCBI chr  X:70,435,340...70,439,052
Ensembl chr  X:66,392,542...66,399,823 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:25453580) RGD PMID:25453580 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Lman2 lectin, mannose-binding 2 involved_in ISO
IEA		 (PMID:22016386)
GO_REF:0000107		 RGD
Ensembl		 PMID:22016386 GO_REF:0000107 NCBI chr17:9,274,362...9,294,950
Ensembl chr17:9,269,022...9,287,265 		JBrowse link
G LOC100909977 leukocyte surface antigen CD47-like involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr11:65,017,692...65,082,553
Ensembl chr11:51,554,714...51,619,588 		JBrowse link
G Lrp1 LDL receptor related protein 1 IMP RGD PMID:19299462 RGD:13800552 NCBI chr 7:65,265,639...65,346,196
Ensembl chr 7:63,380,356...63,460,910 		JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:25735755)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:25735755 GO_REF:0000024 GO_REF:0000107 NCBI chr14:76,789,193...76,802,973
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Mbl1 mannose binding lectin 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:96924 (PMID:15148336)
GO_REF:0000033		 RGD
GO_Central		 PMID:15148336 GO_REF:0000033 NCBI chr16:17,063,232...17,069,271
Ensembl chr16:17,029,118...17,035,174 		JBrowse link
G Mbl2 mannose binding lectin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:96923 (PMID:15148336)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15148336 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase involved_in IDA
IEA
ISO		 GO_REF:0000107
(PMID:18395422)		 Ensembl
RGD		 PMID:18395422 PMID:11592982 GO_REF:0000107, RGD:69668 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mex3b mex-3 RNA binding family member B acts_upstream_of_or_within ISO MGI:5638674 (PMID:24803656) RGD PMID:24803656 NCBI chr 1:136,855,130...136,859,365
Ensembl chr 1:136,855,130...136,859,354 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO (PMID:19940135) RGD PMID:19940135 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:19117932 RGD:6902913 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:19139201) RGD PMID:19139201 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:16407308)		 UniProt
RGD		 PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO
IEA		 (PMID:27994074)
GO_REF:0000107		 RGD
Ensembl		 PMID:27994074 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Pros1 protein S IDA RGD PMID:15949798 RGD:2300013 NCBI chr11:13,676,310...13,757,858
Ensembl chr11:230,696...311,286 		JBrowse link
G Ptk2 protein tyrosine kinase 2 IMP RGD PMID:12912913 RGD:1299194 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:105,126,728...105,331,783 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO UniProtKB:Q64455 (PMID:18249142) RGD PMID:18249142 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J involved_in ISO
IEA		 UniProtKB:P06800 (PMID:18249142)
GO_REF:0000107		 RGD
Ensembl		 PMID:18249142 GO_REF:0000107 NCBI chr 3:96,861,785...97,017,702
Ensembl chr 3:76,405,927...76,562,260 		JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (PMID:14726497) RGD PMID:14726497 NCBI chr 2:150,487,513...150,493,323
Ensembl chr 2:150,487,513...150,493,323 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA		 (PMID:21892172)
GO_REF:0000107		 RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO
IEA		 (PMID:24404184)
GO_REF:0000107		 RGD
Ensembl		 PMID:24404184 GO_REF:0000107 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:18832707 RGD:9835043 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:193,208,635...193,286,501 		JBrowse link
G Rap1gap Rap1 GTPase-activating protein acts_upstream_of_or_within ISO
IEA		 (PMID:24803656)
GO_REF:0000107		 RGD
Ensembl		 PMID:24803656 GO_REF:0000107 NCBI chr 5:155,157,511...155,222,622
Ensembl chr 5:149,892,019...149,939,253 		JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IMP RGD PMID:18832707 RGD:9835043 NCBI chr 3:33,296,211...33,414,119
Ensembl chr 3:12,898,266...13,013,984 		JBrowse link
G Sftpa1 surfactant protein A1 IDA RGD PMID:15187139 RGD:4144050 NCBI chr16:17,042,264...17,045,770
Ensembl chr16:17,008,180...17,011,685 		JBrowse link
G Sftpd surfactant protein D involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:15591410 GO_REF:0000033, RGD:4144046 NCBI chr16:17,080,575...17,093,047
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Sirpa signal-regulatory protein alpha acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:14634079)
GO_REF:0000033		 RGD
GO_Central		 PMID:14634079 GO_REF:0000033 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2446573 (PMID:18456389), (PMID:18984740)
GO_REF:0000107		 RGD
Ensembl		 PMID:18456389 PMID:18984740 GO_REF:0000107 NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in ISO
IEA		 RNAcentral:URS0000021B51_10090 (PMID:25381879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25381879 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA		 (PMID:27994074)
GO_REF:0000107		 RGD
Ensembl		 PMID:27994074 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Tlr2 toll-like receptor 2 IMP RGD PMID:36281822 RGD:597538461 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO
IEA		 (PMID:29518357)
GO_REF:0000107
(PMID:29663649), (PMID:31370707), (PMID:31902528)		 RGD
Ensembl		 PMID:29518357 PMID:29663649 PMID:31370707 PMID:31902528 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Tub TUB bipartite transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:19837063)		 UniProt
RGD		 PMID:19837063 GO_REF:0000024 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO
IEA		 (PMID:19837063)
GO_REF:0000107		 RGD
Ensembl		 PMID:19837063 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:23238794 RGD:8696010 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Ano6 anoctamin 6 involved_in ISO (PMID:25651887) RGD PMID:25651887 NCBI chr 7:128,812,842...128,992,805
Ensembl chr 7:126,933,936...127,113,589 		JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO
IEA		 (PMID:25568335)
GO_REF:0000107		 RGD
Ensembl		 PMID:25568335 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754 		JBrowse link
G C3 complement C3 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P05555 (PMID:20199584), (PMID:22438044), (PMID:22632727)		 Ensembl
RGD		 PMID:20199584 PMID:22438044 PMID:22632727 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO MGI:2447190 (PMID:16061696) RGD PMID:16061696 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISO
IEA		 (PMID:21501162)
GO_REF:0000107		 RGD
Ensembl		 PMID:21501162 GO_REF:0000107 NCBI chr 2:28,507,003...28,519,954
Ensembl chr 2:26,772,278...26,785,226 		JBrowse link
G Fcgr1a Fc gamma receptor 1A IMP RGD PMID:19657115 RGD:9685698 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Gata2 GATA binding protein 2 IMP RGD PMID:12933836 RGD:632788 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:9284952 RGD:2307413 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Lbp lipopolysaccharide binding protein IDA RGD PMID:11104656 RGD:9685187 NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
ISO		 GO_REF:0000024
(PMID:19015308)		 UniProt
RGD		 PMID:19015308 GO_REF:0000024 NCBI chr 7:136,455,900...136,501,384
Ensembl chr 7:134,577,482...134,622,934 		JBrowse link
G Plcg2 phospholipase C, gamma 2 acts_upstream_of_or_within ISO (PMID:32514138) RGD PMID:32514138 NCBI chr19:62,456,196...62,592,684
Ensembl chr19:45,547,416...45,683,930 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:15940641 RGD:8553017 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25568335)		 UniProt
Ensembl
RGD		 PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:112,693,596...112,828,104
Ensembl chr 9:105,246,709...105,381,253 		JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in ISO (PMID:19100238) RGD PMID:19100238 NCBI chr14:22,301,278...22,336,218
Ensembl chr14:21,952,496...21,981,245 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in
acts_upstream_of		 ISO
IEA
IBA		 (PMID:28855300), (PMID:33097708)
GO_REF:0000107
(PMID:25631124), (PMID:29752066)
GO_REF:0000033
(PMID:32514138)		 RGD
Ensembl
GO_Central		 PMID:25631124 PMID:28855300 PMID:29752066 PMID:32514138 PMID:33097708 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgm2 transglutaminase 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12810961), (PMID:15905580)
(PMID:7935379)		 UniProt
RGD		 PMID:7935379 PMID:12810961 PMID:15905580 GO_REF:0000024 NCBI chr 3:167,192,612...167,221,845
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:11278875), (PMID:22503541)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11278875 PMID:22503541 GO_REF:0000024 GO_REF:0000107 NCBI chr10:55,559,060...55,567,535
Ensembl chr10:55,060,412...55,068,874 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      regulation of cellular process 13030
        regulation of cellular component organization 2718
          regulation of endocytosis 365
            regulation of phagocytosis 121
              negative regulation of phagocytosis + 27
              positive regulation of phagocytosis + 88
              regulation of apoptotic cell clearance + 11
              regulation of phagocytosis, engulfment + 19
Path 2
Term Annotations click to browse term
  biological_process 20558
    localization 5728
      establishment of localization 5075
        transport 4763
          vesicle-mediated transport 1654
            regulation of vesicle-mediated transport 646
              regulation of endocytosis 365
                regulation of phagocytosis 121
                  negative regulation of phagocytosis + 27
                  positive regulation of phagocytosis + 88
                  regulation of apoptotic cell clearance + 11
                  regulation of phagocytosis, engulfment + 19
paths to the root