ONTOLOGY REPORT - ANNOTATIONS
Term: stem cell differentiation
Accession: GO:0048863
browse the term
Definition: The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
Synonyms: xref: Wikipedia:Stem_cell_differentiation
never_in_taxon: NCBITaxon:4751 ! Fungi
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A2m
alpha-2-macroglobulin
acts_upstream_of_or_within
ISO
(PMID:19796622)
RGD
PMID:19796622
NCBI chr 4:154,897,770...154,947,787
Ensembl chr 4:154,897,877...154,947,786
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Bbs12
Bardet-Biedl syndrome 12
acts_upstream_of
ISO
MGI:5444297 (PMID:22958920)
RGD
PMID:22958920
NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255
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Bglap
bone gamma-carboxyglutamate protein
IEP
dental pulp stem cells
RGD
PMID:19840645
RGD:2316145
NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
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Bmp4
bone morphogenetic protein 4
involved_in
ISO IEA
(PMID:23993924) GO_REF:0000107
RGD Ensembl
PMID:23993924
GO_REF:0000107
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Cdx2
caudal type homeo box 2
acts_upstream_of_or_within
ISO
MGI:1857928 (PMID:20404091)
RGD
PMID:20404091
NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
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Dmrta2
DMRT-like family A2
acts_upstream_of_or_within
ISO
(PMID:21576465)
RGD
PMID:21576465
NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630
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Dnmt3l
DNA methyltransferase 3 like
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:24074865) GO_REF:0000107
UniProt RGD Ensembl
PMID:24074865
GO_REF:0000024 GO_REF:0000107
NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516
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Ell3
elongation factor for RNA polymerase II 3
involved_in
ISS IEA
GO_REF:0000024 GO_REF:0000107
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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Epcam
epithelial cell adhesion molecule
involved_in
ISO IEA
(PMID:19785009) GO_REF:0000107
RGD Ensembl
PMID:19785009
GO_REF:0000107
NCBI chr 6:6,880,142...6,896,103
Ensembl chr 6:6,878,237...6,896,127
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Epop
elongin BC and polycomb repressive complex 2 associated protein
involved_in
ISO
(PMID:27863225), (PMID:27863226)
RGD
PMID:27863225 PMID:27863226
NCBI chr10:82,624,392...82,625,912
Ensembl chr10:82,624,392...82,625,912
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Esr1
estrogen receptor 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:25655704)
Ensembl RGD
PMID:25655704
GO_REF:0000107
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
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Etv4
ETS variant transcription factor 4
acts_upstream_of_or_within
ISO
MGI:2445834 (PMID:18977342)
RGD
PMID:18977342
NCBI chr10:86,706,749...86,721,974
Ensembl chr10:86,706,749...86,721,974
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
acts_upstream_of
ISO
MGI:2661097 (PMID:19303854)
RGD
PMID:19303854
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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Fgf2
fibroblast growth factor 2
acts_upstream_of
ISO
(PMID:15781473)
RGD
PMID:15781473
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Fgfr1
Fibroblast growth factor receptor 1
acts_upstream_of_or_within
ISO
MGI:95523 (PMID:16442091)
RGD
PMID:16442091
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
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Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:95522 (PMID:16442091)
RGD
PMID:16442091
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
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Foxo4
forkhead box O4
involved_in
ISO
(PMID:22972301)
RGD
PMID:22972301
NCBI chr X:66,385,241...66,392,115
Ensembl chr X:66,385,558...66,392,115
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Gak
cyclin G associated kinase
acts_upstream_of_or_within
ISO
MGI:2445832|MGI:5305733 (PMID:18434600)
RGD
PMID:18434600
NCBI chr14:1,089,853...1,164,098
Ensembl chr14:1,089,866...1,216,398
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Gata6
GATA binding protein 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3793425|MGI:95664 (PMID:18400219)
Ensembl RGD
PMID:18400219
GO_REF:0000107
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Gpm6a
glycoprotein m6a
involved_in
ISO ISS
(PMID:19298174) GO_REF:0000024
RGD UniProt
PMID:19298174
GO_REF:0000024
NCBI chr16:36,641,282...36,973,377
Ensembl chr16:36,641,284...36,973,475
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Gsk3b
glycogen synthase kinase 3 beta
acts_upstream_of
ISO
(PMID:22064483)
RGD
PMID:22064483
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Hesx1
HESX homeobox 1
acts_upstream_of_or_within
ISO
(PMID:31761678)
RGD
PMID:31761678
NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
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Hmga2
high mobility group AT-hook 2
involved_in
ISO
(PMID:17078040)
RGD
PMID:17078040
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Hoxa7
homeobox A7
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19796622)
Ensembl RGD
PMID:19796622
GO_REF:0000107
NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:81,314,625...81,317,659
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Hoxd4
homeo box D4
acts_upstream_of_or_within
ISO
(PMID:19796622)
RGD
PMID:19796622
NCBI chr 3:59,614,464...59,634,042
Ensembl chr 3:59,614,464...59,631,528
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Ift80
intraflagellar transport 80
acts_upstream_of_or_within
ISO
(PMID:30683845)
RGD
PMID:30683845
NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
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Isl1
ISL LIM homeobox 1
acts_upstream_of_or_within
ISO
MGI:2182246 (PMID:9000074)
RGD
PMID:9000074
NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
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Jarid2
jumonji and AT-rich interaction domain containing 2
involved_in
ISO
(PMID:20064375), (PMID:20064376), (PMID:20075857)
RGD
PMID:20064375 PMID:20064376 PMID:20075857
NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
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Kit
KIT proto-oncogene receptor tyrosine kinase
involved_in
ISO
(PMID:18258857)
RGD
PMID:18258857
NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
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Krt10
keratin 10
acts_upstream_of_or_within
ISO
(PMID:19303854)
RGD
PMID:19303854
NCBI chr10:84,338,695...84,343,279
Ensembl chr10:84,338,706...84,343,701
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Krt14
keratin 14
acts_upstream_of_or_within
ISO
(PMID:19303854)
RGD
PMID:19303854
NCBI chr10:85,137,786...85,142,054
Ensembl chr10:85,066,802...85,171,799
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L3mbtl2
L3MBTL histone methyl-lysine binding protein 2
acts_upstream_of_or_within
ISO
MGI:5810650 (PMID:22770845)
RGD
PMID:22770845
NCBI chr 7:113,186,303...113,209,706
Ensembl chr 7:113,186,370...113,207,489
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Lif
LIF, interleukin 6 family cytokine
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:22949634) GO_REF:0000107
RGD Ensembl
PMID:22949634
GO_REF:0000107
NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
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Lin28a
lin-28 homolog A
involved_in
ISO
(PMID:18292307), (PMID:18604195)
RGD
PMID:18292307 PMID:18604195
NCBI chr 5:151,510,891...151,527,884
Ensembl chr 5:146,227,119...146,244,122
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Mapk14
mitogen activated protein kinase 14
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:17644814)
Ensembl RGD
PMID:17644814
GO_REF:0000107
NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
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Men1
menin 1
acts_upstream_of
ISO
MGI:2683274|MGI:3573783 (PMID:17927973)
RGD
PMID:17927973
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
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Mettl5
methyltransferase 5, N6-adenosine
involved_in
ISO
(PMID:32217665), (PMID:32783360)
RGD
PMID:32217665 PMID:32783360
NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039
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Mir125a
microRNA 125a
acts_upstream_of
ISO
MGI:1921298 (PMID:22751012)
RGD
PMID:22751012
NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
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Msx1
msh homeobox 1
acts_upstream_of_or_within
ISO
MGI:97169 (PMID:17693062)
RGD
PMID:17693062
NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966
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Msx2
msh homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:97168 (PMID:17693062)
Ensembl RGD
PMID:17693062
GO_REF:0000107
NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
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Mtf2
metal response element binding transcription factor 2
involved_in
ISO
(PMID:20144788)
RGD
PMID:20144788
NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524
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Nanog
Nanog homeobox
acts_upstream_of acts_upstream_of_or_within
IEP ISO
(PMID:17940068) (PMID:16894029), (PMID:20123909)
RGD
PMID:16894029 PMID:17940068 PMID:20123909 PMID:22211239
RGD:9589812
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Nelfb
negative elongation factor complex member B
involved_in
ISO
(PMID:25773599)
RGD
PMID:25773599
NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403
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Nog
noggin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1862000 (PMID:18028901)
Ensembl RGD
PMID:18028901
GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Osr1
odd-skipped related transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024
NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
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Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pdx1
pancreatic and duodenal homeobox 1
IEP IMP
RGD
PMID:19382247 PMID:18253862
RGD:2311162 , RGD:2311168
NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064
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Phf19
PHD finger protein 19
involved_in
ISO
(PMID:23104054), (PMID:23160351)
RGD
PMID:23104054 PMID:23160351
NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405
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Phf5a
PHD finger protein 5A
involved_in
ISO
(PMID:27749823)
RGD
PMID:27749823
NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within involved_in
ISO
(PMID:20123909) (PMID:23376973), (PMID:29153991)
RGD
PMID:20123909 PMID:23376973 PMID:29153991
NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891
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Prkca
protein kinase C, alpha
acts_upstream_of_or_within
ISO
(PMID:17644814)
RGD
PMID:17644814
NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
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Psmd11
proteasome 26S subunit, non-ATPase 11
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:22972301)
Ensembl UniProt RGD
PMID:22972301
GO_REF:0000024 GO_REF:0000107
NCBI chr10:65,433,853...65,479,774
Ensembl chr10:65,433,853...65,479,766
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Pum1
pumilio RNA-binding family member 1
involved_in
ISO
(PMID:24412312)
RGD
PMID:24412312
NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039
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Runx2
RUNX family transcription factor 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:17693062)
Ensembl RGD
PMID:17693062
GO_REF:0000107
NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
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Setd2
SET domain containing 2, histone lysine methyltransferase
involved_in
ISO
(PMID:25242323)
RGD
PMID:25242323
NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
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Setd6
SET domain containing 6, protein lysine methyltransferase
involved_in
ISS ISO
GO_REF:0000024 (PMID:23324626)
UniProt RGD
PMID:23324626
GO_REF:0000024
NCBI chr19:9,343,309...9,350,477
Ensembl chr19:9,347,458...9,350,453
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Shc4
SHC adaptor protein 4
acts_upstream_of_or_within
ISO
(PMID:22948967)
RGD
PMID:22948967
NCBI chr 3:112,880,598...112,974,216
Ensembl chr 3:112,880,600...112,974,366
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Slc9a1
solute carrier family 9 member A1
acts_upstream_of_or_within
ISO
(PMID:19011045)
RGD
PMID:19011045
NCBI chr 5:145,576,341...145,629,630
Ensembl chr 5:145,576,334...145,629,624
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Smad1
SMAD family member 1
involved_in
ISO IEA
(PMID:23993924) GO_REF:0000107
RGD Ensembl
PMID:23993924
GO_REF:0000107
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
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Smad5
SMAD family member 5
involved_in
ISO IEA
(PMID:23993924) GO_REF:0000107
RGD Ensembl
PMID:23993924
GO_REF:0000107
NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
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Smad9
SMAD family member 9
involved_in
ISO IEA
(PMID:23993924) GO_REF:0000107
RGD Ensembl
PMID:23993924
GO_REF:0000107
NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
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Sox10
SRY-box transcription factor 10
IEP
RGD
PMID:12691661
RGD:1600051
NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
MGI:3717118 (PMID:20123909)
RGD
PMID:20123909
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:20123909)
RGD
PMID:20123909
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Sox21
SRY-box transcription factor 21
involved_in
ISO
(PMID:20876214)
RGD
PMID:20876214
NCBI chr15:95,292,429...95,296,024
Ensembl chr15:95,292,265...95,296,091
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Tbx18
T-box transcription factor 18
acts_upstream_of_or_within
ISO
MGI:3044915 (PMID:18353863)
RGD
PMID:18353863
NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058
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Tcf7l1
transcription factor 7 like 1
acts_upstream_of_or_within
ISO
MGI:3044616 (PMID:16894029)
RGD
PMID:16894029
NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
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Tfap2c
transcription factor AP-2 gamma
acts_upstream_of_or_within
ISO
MGI:3040993 (PMID:20404091)
RGD
PMID:20404091
NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
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Tp63
tumor protein p63
acts_upstream_of_or_within
ISO
MGI:1934580 (PMID:15371309)
RGD
PMID:15371309
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
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Ttyh1
tweety family member 1
acts_upstream_of_or_within
ISO
(PMID:31079925)
RGD
PMID:31079925
NCBI chr 1:70,053,312...70,071,872
Ensembl chr 1:70,053,324...70,071,845
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Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (PMID:12142027)
RGD
PMID:12142027
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Vsir
V-set immunoregulatory receptor
acts_upstream_of_or_within
ISO
(PMID:20042595) MGI:2676809 (PMID:22751012)
RGD
PMID:20042595 PMID:22751012
NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878
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Zfp281
zinc finger protein 281
involved_in
ISO
(PMID:21915945), (PMID:22988117)
RGD
PMID:21915945 PMID:22988117
NCBI chr13:48,096,103...48,104,265
Ensembl chr13:48,037,286...48,104,888
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Zic3
Zic family member 3
involved_in
ISO
(PMID:17267691)
RGD
PMID:17267691
NCBI chr X:136,123,662...136,129,627
Ensembl chr X:136,124,026...136,134,746
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Ctnnb1
catenin beta 1
involved_in
IEA ISO
GO_REF:0000107 MGI:2148567|MGI:3841145 (PMID:30478225)
Ensembl RGD
PMID:30478225
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Grem1
gremlin 1, DAN family BMP antagonist
involved_in
ISO
(PMID:18545679)
RGD
PMID:18545679
NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
G
Isl1
ISL LIM homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19620969)
Ensembl RGD
PMID:19620969
GO_REF:0000107
NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
G
Itgb1
integrin subunit beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2154539 (PMID:9004034)
Ensembl RGD
PMID:9004034
GO_REF:0000107
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
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Myocd
myocardin
involved_in
ISO IEA
(PMID:15907818) GO_REF:0000107
RGD Ensembl
PMID:15907818
GO_REF:0000107
NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
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Notch1
notch receptor 1
involved_in
ISO
(PMID:20007915)
RGD
PMID:20007915
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Nrg1
neuregulin 1
involved_in
ISO IEA
(PMID:17336907) GO_REF:0000107
RGD Ensembl
PMID:17336907
GO_REF:0000107
NCBI chr16:59,250,658...60,304,519
Ensembl chr16:59,250,854...60,296,884
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Rbm10
RNA binding motif protein 10
IEP
RGD
PMID:24178303
RGD:151667450
NCBI chr X:1,540,399...1,572,571
Ensembl chr X:1,540,398...1,572,575
G
Rbpj
recombination signal binding protein for immunoglobulin kappa J region
involved_in
ISO
(PMID:21311046)
RGD
PMID:21311046
NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
G
Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:21199191)
UniProt RGD
PMID:21199191
GO_REF:0000024
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
G
Srf
serum response factor
involved_in
ISO
UniProtKB:Q9JM73 (PMID:19783823) UniProtKB:P11831 (PMID:19783823)
RGD
PMID:19783823
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
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Tbx2
T-box transcription factor 2
involved_in
ISO
(PMID:15459098)
RGD
PMID:15459098
NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
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Tbxt
T-box transcription factor T
involved_in
ISO
(PMID:21632880)
RGD
PMID:21632880
NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864
G
Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
acts_upstream_of_or_within
ISO
MGI:2179740 (PMID:11694877)
RGD
PMID:11694877
NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
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Mapk1
mitogen activated protein kinase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1346859 (PMID:18952847)
Ensembl RGD
PMID:18952847
GO_REF:0000107
NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616
G
Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
MGI:1346858 (PMID:18952847)
RGD
PMID:18952847
NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:3589208 (PMID:21098571)
RGD
PMID:21098571
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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Hand2
heart and neural crest derivatives expressed 2
involved_in
ISO
(PMID:19008477)
RGD
PMID:19008477
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
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Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19609448)
Ensembl RGD
PMID:19609448
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
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Jag1
jagged canonical Notch ligand 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:19509466)
Ensembl RGD
PMID:19509466
GO_REF:0000107
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
G
Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (PMID:18539270)
RGD
PMID:18539270
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Ankrd11
ankyrin repeat domain containing 11
acts_upstream_of_or_within
ISO
(PMID:38951500)
RGD
PMID:38951500
NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962
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Cdc42
cell division cycle 42
involved_in
ISO
(PMID:31219639)
RGD
PMID:31219639
NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
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Edn1
endothelin 1
involved_in
ISO
(PMID:31219639)
RGD
PMID:31219639
NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
G
Ednra
endothelin receptor type A
involved_in
IEA ISO
GO_REF:0000107 MGI:1857473|MGI:2687362 (PMID:31219639)
Ensembl RGD
PMID:31219639
GO_REF:0000107
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
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Folr1
folate receptor alpha
involved_in
ISO
(PMID:17286298)
RGD
PMID:17286298
NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
G
Hand2
heart and neural crest derivatives expressed 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2386570|MGI:3803647 (PMID:20144608)
Ensembl RGD
PMID:20144608
GO_REF:0000107
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
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Nrp1
neuropilin 1
NOT|involved_in
ISO
(PMID:26053665)
RGD
PMID:26053665
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
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Pitx2
paired-like homeodomain 2
involved_in
ISO
(PMID:12464179)
RGD
PMID:12464179
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
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Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857265 (PMID:18539270)
RGD
PMID:18539270
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Eomes
eomesodermin
acts_upstream_of_or_within
ISO
MGI:3774028 (PMID:21822279)
RGD
PMID:21822279
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Tgfb2
transforming growth factor, beta 2
involved_in
ISO ISS
(PMID:15896309) GO_REF:0000024
RGD AgBase
PMID:15896309
GO_REF:0000024
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
G
Batf
basic leucine zipper ATF-like transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:22385964)
UniProt RGD
PMID:22385964
GO_REF:0000024
NCBI chr 6:105,353,715...105,376,051
Ensembl chr 6:105,353,715...105,376,051
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156165 (PMID:9028316)
Ensembl RGD
PMID:9028316
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Cdk6
cyclin-dependent kinase 6
acts_upstream_of_or_within
ISO
MGI:3833563|MGI:5141514 (PMID:21508411)
RGD
PMID:21508411
NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634
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Chd2
chromodomain helicase DNA binding protein 2
acts_upstream_of_or_within
ISO
MGI:3800602 (PMID:19137022)
RGD
PMID:19137022
NCBI chr 1:127,188,146...127,317,041
Ensembl chr 1:127,190,059...127,300,502
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Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
MGI:2183947 (PMID:17554309)
RGD
PMID:17554309
NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:21148566)
RGD
PMID:21148566
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
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Fancb
FA complementation group B
acts_upstream_of_or_within
ISO
(PMID:26658157)
RGD
PMID:26658157
NCBI chr X:29,403,771...29,420,484
Ensembl chr X:29,403,771...29,420,192
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Fbxo21
F-box protein 21
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:35987460) GO_REF:0000107
RGD Ensembl
PMID:35987460
GO_REF:0000107
NCBI chr12:38,570,878...38,605,133
Ensembl chr12:38,571,023...38,605,133
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Hoxb4
homeo box B4
involved_in
ISO
(PMID:18932205)
RGD
PMID:18932205
NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
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Lmbr1l
limb development membrane protein 1-like
involved_in
ISO
(PMID:31073040)
RGD
PMID:31073040
NCBI chr 7:130,061,136...130,078,101
Ensembl chr 7:130,061,136...130,076,381
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Med1
mediator complex subunit 1
acts_upstream_of_or_within
ISO
MGI:1861125 (PMID:16324150)
RGD
PMID:16324150
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
G
Mir125b1
microRNA 125b-1
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052
G
Mir125b2
microRNA 125b-2
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr11:16,245,620...16,245,707
G
Mir126a
microRNA 126a
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr 3:9,415,063...9,415,180
Ensembl chr 3:9,415,063...9,415,180
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Mir130a
microRNA 130a
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629
G
Mir155
microRNA 155
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr11:37,261,114...37,261,178
Ensembl chr11:23,774,654...23,774,718
G
Mir181c
microRNA 181c
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr19:23,983,523...23,983,628
Ensembl chr19:23,983,523...23,983,628
G
Mir193b
microRNA 193b
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr10:1,317,742...1,317,824
Ensembl chr10:1,317,742...1,317,824
G
Mir542
microRNA 542
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr X:132,802,623...132,802,701
Ensembl chr X:132,802,623...132,802,701
G
Mir99a
microRNA 99a
acts_upstream_of_or_within
ISO
(PMID:20660734)
RGD
PMID:20660734
NCBI chr11:16,200,443...16,200,523
Ensembl chr11:16,200,443...16,200,523
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Mllt3
MLLT3, super elongation complex subunit
involved_in
ISO
(PMID:31776511)
RGD
PMID:31776511
NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361
G
Sfrp1
secreted frizzled-related protein 1
involved_in
ISO IEA
(PMID:19778523) GO_REF:0000107
RGD Ensembl
PMID:19778523
GO_REF:0000107
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
G
Sh2b3
SH2B adaptor protein 3
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:14612394) GO_REF:0000107
RGD Ensembl
PMID:14612394
GO_REF:0000107
NCBI chr12:34,731,934...34,753,617
Ensembl chr12:34,731,911...34,753,616
G
Sp7
Sp7 transcription factor
involved_in
ISO
(PMID:18932205)
RGD
PMID:18932205
NCBI chr 7:133,484,609...133,494,788
Ensembl chr 7:133,484,609...133,494,847
G
Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:2176073|MGI:3046779 (PMID:20709909)
RGD
PMID:20709909
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
G
Tal1
TAL bHLH transcription factor 1, erythroid differentiation factor
acts_upstream_of_or_within
ISO
MGI:2176073|MGI:2450311|MGI:2450743|MGI:2661471 (PMID:14726374), (PMID:15677556)
RGD
PMID:14726374 PMID:15677556
NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976
G
Terc
telomerase RNA component
acts_upstream_of_or_within
ISO
MGI:1857930 (PMID:17554309)
RGD
PMID:17554309
NCBI chr 2:112,815,654...112,816,041
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Tp53
tumor protein p53
involved_in
ISO IEA
(PMID:30146126) GO_REF:0000107
RGD Ensembl
PMID:30146126
GO_REF:0000107
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
G
Ufl1
Ufm1-specific ligase 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:25952549)
UniProt RGD
PMID:25952549
GO_REF:0000024
NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
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Xrcc5
X-ray repair cross complementing 5
acts_upstream_of_or_within
ISO
MGI:2152542 (PMID:17554309)
RGD
PMID:17554309
NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
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Zfp36
zinc finger protein 36
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2652418 (PMID:11588035)
Ensembl RGD
PMID:11588035
GO_REF:0000107
NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
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Ggt1
gamma-glutamyltransferase 1
IEP
RGD
PMID:10934156
RGD:14701049
NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
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Hhex
hematopoietically expressed homeobox
acts_upstream_of_or_within
ISO
MGI:3721426 (PMID:17580084)
RGD
PMID:17580084
NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
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Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857856 (PMID:18635606)
Ensembl RGD
PMID:18635606
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
G
Tbx3
T-box transcription factor 3
acts_upstream_of
ISO
MGI:3769504 (PMID:18356246)
RGD
PMID:18356246
NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
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Ctnnb1
catenin beta 1
involved_in
ISO
(PMID:24023731) MGI:2148567|MGI:3841145 (PMID:30478225)
RGD
PMID:24023731 PMID:30478225
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Krt18
keratin 18
IEP
RGD
PMID:18484094
RGD:27226811
NCBI chr 7:133,157,486...133,161,162
Ensembl chr 7:133,157,475...133,161,166 Ensembl chr10:133,157,475...133,161,166
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Mir346
microRNA 346
involved_in
ISO
(PMID:24023731)
RGD
PMID:24023731
NCBI chr16:10,218,118...10,218,215
Ensembl chr16:10,218,118...10,218,215
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Ndufs6
NADH:ubiquinone oxidoreductase subunit S6
acts_upstream_of_or_within
ISO
(PMID:33323934)
RGD
PMID:33323934
NCBI chr 1:29,968,833...29,977,423
Ensembl chr 1:29,968,842...29,977,467
G
Rest
RE1-silencing transcription factor
involved_in
ISO ISS IEA
(PMID:20942606) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:20942606
GO_REF:0000024 GO_REF:0000107
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
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Prickle1
prickle planar cell polarity protein 1
involved_in
ISO IEA
(PMID:21199191) GO_REF:0000107
RGD Ensembl
PMID:21199191
GO_REF:0000107
NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
G
Hspa9
heat shock protein family A (Hsp70) member 9
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:21123823) GO_REF:0000107
UniProt RGD Ensembl
PMID:21123823
GO_REF:0000024 GO_REF:0000107
NCBI chr18:26,536,131...26,554,294
Ensembl chr18:26,535,798...26,554,292
G
N4bp2l2
NEDD4 binding protein 2-like 2
involved_in
ISO
(PMID:19506020)
RGD
PMID:19506020
NCBI chr12:137,342...200,292
Ensembl chr12:103,590...197,784
G
Nfe2l2
NFE2 like bZIP transcription factor 2
involved_in
ISO
(PMID:23434824)
RGD
PMID:23434824
NCBI chr 3:81,001,529...81,031,165
Ensembl chr 3:60,594,242...60,621,737
G
Tcf15
transcription factor 15
involved_in
ISO
(PMID:32669716)
RGD
PMID:32669716
NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766
G
Tmsb4x
thymosin beta 4, X-linked
involved_in
ISO
(PMID:7694679)
RGD
PMID:7694679
NCBI chr X:27,144,666...27,146,667
Ensembl chr X:27,128,610...27,146,667 Ensembl chr10:27,128,610...27,146,667
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Zfp36
zinc finger protein 36
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2652418 (PMID:11588035)
Ensembl RGD
PMID:11588035
GO_REF:0000107
NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
G
Gsk3b
glycogen synthase kinase 3 beta
involved_in
ISO IEA
(PMID:24023731) GO_REF:0000107
RGD Ensembl
PMID:24023731
GO_REF:0000107
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
G
Mir154
microRNA 154
acts_upstream_of_or_within
ISO
(PMID:25959411)
RGD
PMID:25959411
NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030
G
Rest
RE1-silencing transcription factor
involved_in
ISO
(PMID:18570921)
RGD
PMID:18570921
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
G
Bbs12
Bardet-Biedl syndrome 12
acts_upstream_of_or_within
ISO
MGI:5444297 (PMID:22958920)
RGD
PMID:22958920
NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255
G
Ccnk
cyclin K
acts_upstream_of_or_within
ISO
(PMID:22547058)
RGD
PMID:22547058
NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
G
Cdk12
cyclin-dependent kinase 12
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:22547058)
Ensembl RGD
PMID:22547058
GO_REF:0000107
NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888 Ensembl chr10:83,201,211...83,280,888
G
Cdk13
cyclin-dependent kinase 13
acts_upstream_of_or_within
ISO
(PMID:22547058)
RGD
PMID:22547058
NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
G
Esrrb
estrogen-related receptor beta
involved_in
ISS ISO
GO_REF:0000024 (PMID:26206133)
UniProt RGD
PMID:26206133
GO_REF:0000024
NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
G
Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
acts_upstream_of_or_within
ISO
MGI:2661097 (PMID:19303854)
RGD
PMID:19303854
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
G
Hes1
hes family bHLH transcription factor 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:19682396)
Ensembl RGD
PMID:19682396
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Hes5
hes family bHLH transcription factor 5
involved_in
ISO ISS
(PMID:19682396) GO_REF:0000024
RGD UniProt
PMID:19682396
GO_REF:0000024
NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
G
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:21235343) GO_REF:0000024
Ensembl RGD UniProt
PMID:21235343
GO_REF:0000024 GO_REF:0000107
NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
G
Jag1
jagged canonical Notch ligand 1
involved_in
ISO IEA
(PMID:19682396) GO_REF:0000107
RGD Ensembl
PMID:19682396
GO_REF:0000107
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
G
Lbh
LBH regulator of WNT signaling pathway
involved_in
ISO
(PMID:25655704)
RGD
PMID:25655704
NCBI chr 6:22,569,238...22,593,056
Ensembl chr 6:22,568,834...22,593,079
G
Mir125a
microRNA 125a
acts_upstream_of_or_within
ISO
MGI:1921298 (PMID:22751012)
RGD
PMID:22751012
NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
G
Nanog
Nanog homeobox
acts_upstream_of_or_within
ISO
(PMID:17940068)
RGD
PMID:17940068
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
G
Ncoa3
nuclear receptor coactivator 3
acts_upstream_of_or_within
ISO
(PMID:22977234)
RGD
PMID:22977234
NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
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Nelfb
negative elongation factor complex member B
involved_in
ISO
(PMID:19340312)
RGD
PMID:19340312
NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403
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Notch1
notch receptor 1
involved_in
ISO
(PMID:19682396)
RGD
PMID:19682396
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
Stat3
signal transducer and activator of transcription 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:25335925)
Ensembl RGD
PMID:25335925
GO_REF:0000107
NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
G
Tbx3
T-box transcription factor 3
acts_upstream_of_or_within
ISO
MGI:3769504 (PMID:18356246)
RGD
PMID:18356246
NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
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Trim6
tripartite motif containing 6
involved_in
ISO
(PMID:22328504)
RGD
PMID:22328504
NCBI chr 1:158,683,746...158,696,936
Ensembl chr 1:158,683,746...158,696,914
G
Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20516196)
Ensembl RGD
PMID:20516196
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Ythdf2
YTH N6-methyladenosine RNA binding protein F2
involved_in
ISO
(PMID:32169943)
RGD
PMID:32169943
NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144
G
Zfp36l2
zinc finger protein 36, C3H type-like 2
involved_in
ISO
(PMID:23748442)
RGD
PMID:23748442
NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1096359|MGI:1857891|MGI:2679699 (PMID:16368932), (PMID:17067568)
RGD
PMID:16368932 PMID:17067568
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
G
Arb2a
ARB2 cotranscriptional regulator A
involved_in
ISO
(PMID:29311329)
RGD
PMID:29311329
NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
(PMID:19793887)
RGD
PMID:19793887
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Cdh2
cadherin 2
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:26750727) GO_REF:0000024
Ensembl RGD UniProt
PMID:26750727
GO_REF:0000024 GO_REF:0000107
NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
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Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
acts_upstream_of_or_within
ISO
MGI:2679699 (PMID:17067568)
RGD
PMID:17067568
NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
G
Cyp26c1
cytochrome P450, family 26, subfamily C, polypeptide 1
acts_upstream_of_or_within
ISO
MGI:1096359 (PMID:17067568)
RGD
PMID:17067568
NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842
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Edn1
endothelin 1
acts_upstream_of_or_within
ISO
MGI:1857637 (PMID:15327783), (PMID:9671575)
RGD
PMID:9671575 PMID:15327783
NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
G
Ednra
endothelin receptor type A
acts_upstream_of_or_within
ISO
MGI:1857473 (PMID:15306564), (PMID:15327783), (PMID:9449664)
RGD
PMID:9449664 PMID:15306564 PMID:15327783
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
G
Foxc1
forkhead box C1
acts_upstream_of_or_within
ISO
MGI:1347481 (PMID:16839542)
RGD
PMID:16839542
NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
G
Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1347466 (PMID:16839542)
RGD
PMID:16839542
NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
G
Hand2
heart and neural crest derivatives expressed 2
acts_upstream_of_or_within
ISO
MGI:1857639 (PMID:9671575)
RGD
PMID:9671575
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
G
Kbtbd8
kelch repeat and BTB domain containing 8
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:26399832) GO_REF:0000107
UniProt RGD Ensembl
PMID:26399832
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:127,675,967...127,688,785
Ensembl chr 4:127,676,141...127,687,697
G
Klhl12
kelch-like family member 12
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:27716508)
UniProt Ensembl RGD
PMID:27716508
GO_REF:0000024 GO_REF:0000107
NCBI chr13:45,899,913...45,933,648
Ensembl chr13:45,899,928...45,933,643
G
Mapk1
mitogen activated protein kinase 1
acts_upstream_of_or_within
ISO
MGI:1346859 (PMID:18952847)
RGD
PMID:18952847
NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616
G
Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
MGI:1346858 (PMID:18952847)
RGD
PMID:18952847
NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863
G
Nolc1
nucleolar and coiled-body phosphoprotein 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:26399832)
UniProt Ensembl RGD
PMID:26399832
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088
G
Pdcd6
programmed cell death 6
involved_in
ISO ISS
(PMID:27716508) GO_REF:0000024
RGD UniProt
PMID:27716508
GO_REF:0000024
NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189
G
Pef1
penta-EF hand domain containing 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:27716508)
UniProt Ensembl RGD
PMID:27716508
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067
G
Rdh10
retinol dehydrogenase 10
acts_upstream_of_or_within
ISO
(PMID:17473173)
RGD
PMID:17473173
NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
G
Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:12444107)
RGD
PMID:12444107
NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200
G
Sox8
SRY-box transcription factor 8
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Sox9
SRY-box transcription factor 9
acts_upstream_of_or_within
ISO
MGI:3041881 (PMID:15691760)
RGD
PMID:15691760
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Tcof1
treacle ribosome biogenesis factor 1
involved_in
ISO
(PMID:26399832)
RGD
PMID:26399832
NCBI chr18:54,267,015...54,300,324
Ensembl chr18:54,267,026...54,300,324
G
Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2176682 (PMID:8622766)
RGD
PMID:8622766
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Edn1
endothelin 1
involved_in
ISO
MGI:1857637 (PMID:23933587)
RGD
PMID:23933587
NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
G
Ednra
endothelin receptor type A
involved_in
ISO
MGI:102780|MGI:2687362|MGI:3773698|MGI:4867385 (PMID:19185569), (PMID:23933587), (PMID:28455376)
RGD
PMID:19185569 PMID:23933587 PMID:28455376
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
G
Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:26295701)
RGD
PMID:26295701
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
G
Frzb
frizzled-related protein
involved_in
ISO
(PMID:10654605)
RGD
PMID:10654605
NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
G
Htr2b
5-hydroxytryptamine receptor 2B
involved_in
ISS ISO
GO_REF:0000024 (PMID:9165122)
UniProt RGD
PMID:9165122
GO_REF:0000024
NCBI chr 9:86,735,793...86,756,638
Ensembl chr 9:86,742,102...86,755,108
G
Lrp6
LDL receptor related protein 6
involved_in
ISO
(PMID:11029007)
RGD
PMID:11029007
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Mef2c
myocyte enhancer factor 2C
involved_in
ISS ISO
GO_REF:0000024 (PMID:21610032)
UniProt RGD
PMID:21610032
GO_REF:0000024
NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
G
Otud5
OTU deubiquitinase 5
involved_in
ISO IEA ISS
(PMID:33523931) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:33523931
GO_REF:0000024 GO_REF:0000107
NCBI chr X:14,626,173...14,659,331
Ensembl chr X:14,626,164...14,659,573
G
Rps7
ribosomal protein S7
acts_upstream_of_or_within
ISO
MGI:3043039 (PMID:15384171)
RGD
PMID:15384171
NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145 Ensembl chr 5:45,223,980...45,271,145
G
Six1
SIX homeobox 1
involved_in
ISO
MGI:105923 (PMID:28455376)
RGD
PMID:28455376
NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
G
Smad4
SMAD family member 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19793887)
Ensembl RGD
PMID:19793887
GO_REF:0000107
NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
G
Wnt10a
Wnt family member 10A
acts_upstream_of_or_within
ISO
(PMID:17286598)
RGD
PMID:17286598
NCBI chr 9:76,349,931...76,362,400
Ensembl chr 9:76,349,931...76,362,400
G
Zic2
Zic family member 2
acts_upstream_of_or_within
ISO
MGI:1862004 (PMID:15384171)
RGD
PMID:15384171
NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522
G
Zic5
Zic family member 5
acts_upstream_of_or_within
ISO
MGI:3052154 (PMID:15136147)
RGD
PMID:15136147
NCBI chr15:99,558,285...99,567,023
Ensembl chr15:99,560,323...99,567,035
G
Edn1
endothelin 1
involved_in
ISO
MGI:1857637 (PMID:23933587)
RGD
PMID:23933587
NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
G
Ednra
endothelin receptor type A
involved_in
IEA ISO
GO_REF:0000107 MGI:1857473|MGI:3773698|MGI:4867385 (PMID:17294360), (PMID:23933587)
Ensembl RGD
PMID:17294360 PMID:23933587
GO_REF:0000107
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
G
Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3045799 (PMID:20130188)
Ensembl RGD
PMID:20130188
GO_REF:0000107
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
G
Gsc
goosecoid homeobox
involved_in
ISO
(PMID:24290375)
RGD
PMID:24290375
NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111
G
Acvr1
activin A receptor type 1
acts_upstream_of_or_within
ISO
MGI:2651395 (PMID:15226263)
RGD
PMID:15226263
NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
G
Ankrd11
ankyrin repeat domain containing 11
acts_upstream_of_or_within
ISO
(PMID:38951500)
RGD
PMID:38951500
NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962
G
Cfl1
cofilin 1
acts_upstream_of_or_within
ISO
MGI:3574399 (PMID:15649475)
RGD
PMID:15649475
NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
G
Coro1c
coronin 1C
involved_in
ISO IBA
(PMID:25074804) GO_REF:0000033
RGD GO_Central
PMID:25074804
GO_REF:0000033
NCBI chr12:42,713,024...42,785,179
Ensembl chr12:42,712,991...42,785,179
G
Edn3
endothelin 3
acts_upstream_of_or_within
ISO
MGI:1856392 (PMID:9624616)
RGD
PMID:9624616
NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
G
Ednrb
endothelin receptor type B
acts_upstream_of_or_within
ISO
(PMID:10591209)
RGD
PMID:10591209
NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
G
Efnb1
ephrin B1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3039290 (PMID:15037550)
Ensembl RGD
PMID:15037550
GO_REF:0000107
NCBI chr X:64,257,351...64,270,158
Ensembl chr X:64,257,351...64,270,157
G
Erbb4
erb-b2 receptor tyrosine kinase 4
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:10655590) GO_REF:0000107
UniProt RGD Ensembl
PMID:10655590
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595
G
Fgf19
fibroblast growth factor 19
acts_upstream_of_or_within
ISO
MGI:3044957 (PMID:15789410)
RGD
PMID:15789410
NCBI chr 1:200,056,526...200,060,980
Ensembl chr 1:200,056,644...200,060,287
G
Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (PMID:15996652), (PMID:19700621), (PMID:23144817)
RGD
PMID:15996652 PMID:19700621 PMID:23144817
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
G
Gdnf
glial cell derived neurotrophic factor
involved_in acts_upstream_of_or_within
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:15242795)
UniProt Ensembl RGD
PMID:15242795
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209
G
Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2179429 (PMID:14659802)
Ensembl RGD
PMID:14659802
GO_REF:0000107
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Htr2b
5-hydroxytryptamine receptor 2B
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:9165122) GO_REF:0000024
Ensembl RGD UniProt
PMID:9165122
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:86,735,793...86,756,638
Ensembl chr 9:86,742,102...86,755,108
G
Isl1
ISL LIM homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:108075 (PMID:16687132)
Ensembl RGD
PMID:16687132
GO_REF:0000107
NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
G
Kitlg
KIT ligand
acts_upstream_of_or_within
ISO
(PMID:11401406)
RGD
PMID:11401406
NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
G
Lama5
laminin subunit alpha 5
acts_upstream_of_or_within
ISO
MGI:1934917 (PMID:16316641)
RGD
PMID:16316641
NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
G
Nrp1
neuropilin 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
G
Nrtn
neurturin
acts_upstream_of_or_within
ISO
(PMID:15242795)
RGD
PMID:15242795
NCBI chr 9:1,581,860...1,587,835
Ensembl chr 9:1,581,975...1,583,102
G
Ovol2
ovo-like zinc finger 2
acts_upstream_of_or_within
ISO
MGI:3522498 (PMID:16423343)
RGD
PMID:16423343
NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359
G
Pax3
paired box 3
acts_upstream_of_or_within
ISO
MGI:3043030 (PMID:15384171)
RGD
PMID:15384171
NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042
G
Pax6
paired box 6
IMP
RGD
PMID:9079035
RGD:8552342
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Phactr4
phosphatase and actin regulator 4
involved_in
IBA ISO
GO_REF:0000033 (PMID:22215812)
GO_Central RGD
PMID:22215812
GO_REF:0000033
NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865
G
Radil
Rap associating with DIL domain
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:12,024,395...12,088,540
Ensembl chr12:12,024,395...12,088,540
G
Ret
ret proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2449909 (PMID:15242795)
RGD
PMID:15242795
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
G
Sema3a
semaphorin 3A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
G
Sema3b
semaphorin 3B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:108,271,663...108,280,326
Ensembl chr 8:108,271,666...108,282,919
G
Sema3c
semaphorin 3C
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2150759 (PMID:11688556)
GO_Central RGD
PMID:11688556
GO_REF:0000033
NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534
G
Sema3d
semaphorin 3D
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:22,316,769...22,505,930
Ensembl chr 4:22,316,779...22,505,930
G
Sema3e
semaphorin 3E
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:20,297,534...20,555,287
Ensembl chr 4:20,299,718...20,555,229
G
Sema3f
semaphorin 3F
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083
G
Sema3g
semaphorin 3G
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:6,413,589...6,425,221
Ensembl chr16:6,413,589...6,425,221
G
Sema4a
semaphorin 4A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:173,896,432...173,917,903
Ensembl chr 2:173,896,439...173,914,442
G
Sema4b
semaphorin 4B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:134,136,646...134,177,777
Ensembl chr 1:134,149,536...134,177,775
G
Sema4c
semaphorin 4C
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:38,791,668...38,802,171
Ensembl chr 9:38,791,670...38,802,128
G
Sema4d
semaphorin 4D
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr17:13,430,324...13,537,146
Ensembl chr17:13,430,379...13,537,138
G
Sema4f
semaphorin 4F
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:115,411,411...115,437,721
Ensembl chr 4:115,411,417...115,437,721
G
Sema4g
semaphorin 4G
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:243,849,979...243,865,343
Ensembl chr 1:243,853,854...243,865,341
G
Sema5a
semaphorin 5A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
G
Sema5b
semaphorin 5B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:65,102,532...65,225,456
Ensembl chr11:65,102,031...65,225,311
G
Sema6a
semaphorin 6A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:40,050,623...40,171,954
Ensembl chr18:40,050,624...40,171,954
G
Sema6b
semaphorin 6B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:950,939...967,905
Ensembl chr 9:950,939...961,521
G
Sema6c
semaphorin 6C
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:182,733,635...182,750,066
Ensembl chr 2:182,737,474...182,746,856
G
Sema6d
semaphorin 6D
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:111,883,415...111,941,100
Ensembl chr 3:111,883,872...111,941,094
G
Sema7a
semaphorin 7A (John Milton Hagen blood group)
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:58,348,448...58,370,536
Ensembl chr 8:58,348,448...58,370,536
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857796 (PMID:15936751)
UniProt RGD
PMID:15936751
GO_REF:0000024
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:101791 (PMID:16687132)
Ensembl RGD
PMID:16687132
GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
G
Sox10
SRY-box transcription factor 10
involved_in
IBA ISO
GO_REF:0000033 (PMID:15572147)
GO_Central RGD
PMID:15572147
GO_REF:0000033
NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544
G
Sox8
SRY-box transcription factor 8
involved_in
ISS ISO
GO_REF:0000024 (PMID:15572147)
UniProt RGD
PMID:15572147
GO_REF:0000024
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Tbx1
T-box transcription factor 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2179190|MGI:2179191 (PMID:15652707), (PMID:20501333)
UniProt RGD
PMID:15652707 PMID:20501333
GO_REF:0000024
NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
G
Zeb2
zinc finger E-box binding homeobox 2
acts_upstream_of_or_within
ISO
MGI:2387501 (PMID:12522767)
RGD
PMID:12522767
NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
G
Fn1
fibronectin 1
involved_in
ISO IEA
(PMID:26571399) GO_REF:0000107
RGD Ensembl
PMID:26571399
GO_REF:0000107
NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
G
Nrp1
neuropilin 1
involved_in
ISO
(PMID:18356247), (PMID:19325129), (PMID:19386662)
RGD
PMID:18356247 PMID:19325129 PMID:19386662
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
G
Nrp2
neuropilin 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:18356247), (PMID:19386662)
Ensembl RGD
PMID:18356247 PMID:19386662
GO_REF:0000107
NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
G
Phox2b
paired-like homeobox 2b
involved_in
ISO
(PMID:10360575)
RGD
PMID:10360575
NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
G
Sema3a
semaphorin 3A
involved_in
ISO
(PMID:18356247), (PMID:19325129), (PMID:19386662)
RGD
PMID:18356247 PMID:19325129 PMID:19386662
NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
G
Sema3f
semaphorin 3F
involved_in
ISO
(PMID:19386662)
RGD
PMID:19386662
NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083
G
Folr1
folate receptor alpha
involved_in
ISO
(PMID:17286298)
RGD
PMID:17286298
NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
G
Sema3a
semaphorin 3A
involved_in
ISO
(PMID:19325129)
RGD
PMID:19325129
NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
G
Bmp4
bone morphogenetic protein 4
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P23359 (PMID:23863481)
Ensembl RGD
PMID:23863481
GO_REF:0000107
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P21275 (PMID:23863481)
RGD
PMID:23863481
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
G
Sema3c
semaphorin 3C
involved_in
ISO
(PMID:26053665)
RGD
PMID:26053665
NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534
G
Dhx36
DEAH-box helicase 36
involved_in
ISS ISO
GO_REF:0000024 (PMID:26489465)
UniProt RGD
PMID:26489465
GO_REF:0000024
NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
G
Nkx2-5
NK2 homeobox 5
involved_in
IEA ISO
GO_REF:0000107 (PMID:11889119)
Ensembl RGD
PMID:11889119
GO_REF:0000107
NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
G
Tbx5
T-box transcription factor 5
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:11431700)
UniProt Ensembl RGD
PMID:11431700
GO_REF:0000024 GO_REF:0000107
NCBI chr12:36,686,344...36,739,253
Ensembl chr12:36,688,014...36,734,885
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:15896309)
AgBase RGD
PMID:15896309
GO_REF:0000024
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
G
Foxc1
forkhead box C1
involved_in
ISO
(PMID:24590069)
RGD
PMID:24590069
NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
G
Ltbp3
latent transforming growth factor beta binding protein 3
involved_in
ISO
(PMID:18672106)
RGD
PMID:18672106
NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
G
Nr6a1
nuclear receptor subfamily 6, group A, member 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:26769970)
Ensembl RGD
PMID:26769970
GO_REF:0000107
NCBI chr 3:22,495,109...22,683,132
Ensembl chr 3:22,496,943...22,683,131
G
Sox5
SRY-box transcription factor 5
involved_in
ISO
(PMID:21401405)
RGD
PMID:21401405
NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
G
Sox6
SRY-box transcription factor 6
involved_in
ISO IEA
(PMID:21401405) GO_REF:0000107
RGD Ensembl
PMID:21401405
GO_REF:0000107
NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
G
Sox9
SRY-box transcription factor 9
involved_in
ISO ISS
(PMID:21401405) GO_REF:0000024
RGD UniProt
PMID:21401405
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Fgf2
fibroblast growth factor 2
acts_upstream_of_or_within
ISO
(PMID:15781473)
RGD
PMID:15781473
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Gsk3b
glycogen synthase kinase 3 beta
acts_upstream_of_or_within
ISO
(PMID:22064483)
RGD
PMID:22064483
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
G
Hoxb4
homeo box B4
involved_in
ISO
(PMID:18932205)
RGD
PMID:18932205
NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
G
Men1
menin 1
acts_upstream_of_or_within
ISO
MGI:2683274|MGI:3573783 (PMID:17927973)
RGD
PMID:17927973
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Mir100
microRNA 100
acts_upstream_of_or_within
ISO
(PMID:20439489)
RGD
PMID:20439489
NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304
G
Mir137
microRNA 137
acts_upstream_of_or_within
ISO
(PMID:20439489)
RGD
PMID:20439489
NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985
G
Mir34a
microRNA 34a
acts_upstream_of_or_within
ISO
(PMID:20439489)
RGD
PMID:20439489
NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
G
Mtch2
mitochondrial carrier 2
involved_in
ISO
(PMID:30510213)
RGD
PMID:30510213
NCBI chr 3:76,830,549...76,850,189
Ensembl chr 3:76,830,413...76,850,189
G
Nr5a2
nuclear receptor subfamily 5, group A, member 2
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr13:48,313,634...48,433,494
Ensembl chr13:48,316,301...48,433,326
G
Nudt21
nudix hydrolase 21
involved_in
ISS ISO
GO_REF:0000024 (PMID:29249356)
UniProt RGD
PMID:29249356
GO_REF:0000024
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
G
Ptn
pleiotrophin
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:15121180) GO_REF:0000107
UniProt RGD Ensembl
PMID:15121180
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Pwp1
PWP1 homolog, endonuclein
acts_upstream_of_or_within
ISO
(PMID:25335925)
RGD
PMID:25335925
NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731
G
Rbm24
RNA binding motif protein 24
involved_in
ISO
(PMID:26990106)
RGD
PMID:26990106
NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102
G
Sirt6
sirtuin 6
involved_in
ISO
(PMID:27912097) (PMID:25915124), (PMID:29555651)
RGD
PMID:25915124 PMID:27912097 PMID:29555651
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
G
Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
MGI:3717118 (PMID:20123909)
RGD
PMID:20123909
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
G
Sp7
Sp7 transcription factor
involved_in
ISO
(PMID:18932205)
RGD
PMID:18932205
NCBI chr 7:133,484,609...133,494,788
Ensembl chr 7:133,484,609...133,494,847
G
Tacstd2
tumor-associated calcium signal transducer 2
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 (PMID:23070813) GO_REF:0000033
Ensembl RGD GO_Central
PMID:23070813
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:96,707,950...96,709,650
Ensembl chr 4:96,707,951...96,709,650
G
Tcf15
transcription factor 15
involved_in
ISO
(PMID:23395635)
RGD
PMID:23395635
NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766
G
Vsir
V-set immunoregulatory receptor
acts_upstream_of_or_within
ISO
MGI:2676809 (PMID:22751012)
RGD
PMID:22751012
NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878
G
Eng
endoglin
NOT|involved_in
ISO
(PMID:17628518)
RGD
PMID:17628518
NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230
G
Cdk6
cyclin-dependent kinase 6
acts_upstream_of_or_within
ISO
MGI:3053975 (PMID:25342715)
RGD
PMID:25342715
NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634
G
Eif2ak2
eukaryotic translation initiation factor 2-alpha kinase 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:23403623)
UniProt RGD
PMID:23403623
GO_REF:0000024
NCBI chr 6:16,189,000...16,224,972
Ensembl chr 6:16,188,979...16,224,971
G
Kat5
lysine acetyltransferase 5
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:32542325) GO_REF:0000107
UniProt RGD Ensembl
PMID:32542325
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
G
Prkdc
protein kinase, DNA-activated, catalytic subunit
involved_in
ISO
(PMID:32103174)
RGD
PMID:32103174
NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
G
Pus7
pseudouridine synthase 7
involved_in
ISO
(PMID:29628141)
RGD
PMID:29628141
NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172
G
Setd1a
SET domain containing 1A, histone lysine methyltransferase
involved_in
ISO
(PMID:27141965)
RGD
PMID:27141965
NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090
G
Ythdf2
YTH N6-methyladenosine RNA binding protein F2
involved_in
ISO
(PMID:30065315), (PMID:30150673)
RGD
PMID:30065315 PMID:30150673
NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144
G
Fzd1
frizzled class receptor 1
involved_in
ISO
(PMID:20039315)
RGD
PMID:20039315
NCBI chr 4:29,310,303...29,314,701
Ensembl chr 4:29,310,091...29,312,643 Ensembl chr 4:29,310,091...29,312,643
G
Mir21
microRNA 21
IMP
RGD
PMID:27798620
RGD:41404703
NCBI chr10:71,902,600...71,902,691
Ensembl chr10:71,405,257...71,405,348
G
Pdgfra
platelet derived growth factor receptor alpha
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:21596750) GO_REF:0000024
Ensembl RGD UniProt
PMID:21596750
GO_REF:0000024 GO_REF:0000107
NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
G
Slc4a11
solute carrier family 4 member 11
involved_in
ISO
(PMID:33247189)
RGD
PMID:33247189
NCBI chr 3:117,900,223...117,912,787
Ensembl chr 3:117,900,223...117,912,674
G
Wnt3
Wnt family member 3
involved_in
ISO
(PMID:20039315)
RGD
PMID:20039315
NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099
G
Bmpr1a
bone morphogenetic protein receptor type 1A
NOT|involved_in
ISO
(PMID:15073157)
RGD
PMID:15073157
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Bmpr1a
bone morphogenetic protein receptor type 1A
NOT|involved_in
ISO
(PMID:15073157)
RGD
PMID:15073157
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:3589287 (PMID:15713842)
RGD
PMID:15713842
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
G
Kdm3a
lysine demethylase 3A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:17938240)
Ensembl RGD
PMID:17938240
GO_REF:0000107
NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073
G
Kdm4c
lysine demethylase 4C
acts_upstream_of_or_within
ISO
(PMID:17938240)
RGD
PMID:17938240
NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
G
Mir146a
microRNA 146a
involved_in
ISO
(PMID:29384235)
RGD
PMID:29384235
NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610
G
Mir295-1
microRNA 295-1
involved_in
ISO
(PMID:21490602)
RGD
PMID:21490602
NCBI chr 1:65,962,566...65,962,646
Ensembl chr 1:65,962,566...65,962,646
G
Nsun2
NOP2/Sun RNA methyltransferase 2
involved_in
ISO
(PMID:22144916)
RGD
PMID:22144916
NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862
G
Ociad1
OCIA domain containing 1
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:23972987) GO_REF:0000104
UniProt RGD
PMID:23972987
GO_REF:0000024 GO_REF:0000104
NCBI chr14:34,897,851...34,915,291
Ensembl chr14:34,897,847...34,915,286
G
Prdm4
PR/SET domain 4
involved_in
IMP
PMID:23048031
ParkinsonsUK-UCL
PMID:23048031
RGD:10054084
NCBI chr 7:17,953,832...17,980,489
Ensembl chr 7:17,954,019...17,980,489
G
Smyd5
SMYD family member 5
involved_in
ISO
(PMID:28951459) (PMID:28250819), (PMID:28951459)
RGD
PMID:28250819 PMID:28951459
NCBI chr 4:117,969,615...117,984,082
Ensembl chr 4:117,969,626...117,984,347
G
Tead2
TEA domain transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:21385842)
RGD
PMID:21385842
NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:21490602)
Ensembl RGD
PMID:21490602
GO_REF:0000107
NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
G
Ccdc88c
coiled-coil domain containing 88C
acts_upstream_of_or_within
ISO
(PMID:33929515)
RGD
PMID:33929515
NCBI chr 6:120,169,752...120,289,459
Ensembl chr 6:120,169,738...120,289,555
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Foxa1
forkhead box A1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653543 (PMID:16214823)
Ensembl RGD
PMID:16214823
GO_REF:0000107
NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:3044679 (PMID:17215304)
RGD
PMID:17215304
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
G
Tp63
tumor protein p63
acts_upstream_of_or_within
ISO
MGI:1934580 (PMID:15371309)
RGD
PMID:15371309
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
G
Alx1
ALX homeobox 1
acts_upstream_of_or_within
ISO
MGI:1857553 (PMID:8673125)
RGD
PMID:8673125
NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156165 (PMID:8623928)
Ensembl RGD
PMID:8623928
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
G
Fgf2
fibroblast growth factor 2
involved_in
ISO
(PMID:12843296)
RGD
PMID:12843296
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Mir203-2
microRNA 203-2
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:131,199,542...131,199,656
Ensembl chr 6:131,199,542...131,199,656
G
Mir7-1
microRNA 7-1
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr17:6,273,264...6,273,360
Ensembl chr17:6,273,264...6,273,360
G
Msi2
musashi RNA-binding protein 2
involved_in
ISO
(PMID:12407178)
RGD
PMID:12407178
NCBI chr10:73,143,760...73,510,566
Ensembl chr10:73,147,380...73,510,157
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Ptprc
protein tyrosine phosphatase, receptor type, C
involved_in
ISO
(PMID:21911094)
RGD
PMID:21911094
NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
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Setd2
SET domain containing 2, histone lysine methyltransferase
acts_upstream_of_or_within
ISO
MGI:4437211 (PMID:20133625)
RGD
PMID:20133625
NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
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Shh
sonic hedgehog signaling molecule
involved_in
ISS ISO
GO_REF:0000024 (PMID:12843296)
UniProt RGD
PMID:12843296
GO_REF:0000024
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Wnt7a
Wnt family member 7A
involved_in
ISO
(PMID:12843296)
RGD
PMID:12843296
NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
G
Wnt7b
Wnt family member 7B
involved_in
ISO
(PMID:12843296)
RGD
PMID:12843296
NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581
G
Dmrta2
DMRT-like family A2
acts_upstream_of_or_within
ISO
(PMID:21576465)
RGD
PMID:21576465
NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630
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Sfrp2
secreted frizzled-related protein 2
acts_upstream_of
ISO
MGI:98956 (PMID:17462603)
RGD
PMID:17462603
NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
(PMID:20228271)
RGD
PMID:20228271
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Sox18
SRY-box transcription factor 18
acts_upstream_of_or_within
ISO
(PMID:20228271)
RGD
PMID:20228271
NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290
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Lama5
laminin subunit alpha 5
acts_upstream_of_or_within
ISO
MGI:1934917 (PMID:16316641)
RGD
PMID:16316641
NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
G
Nrp2
neuropilin 2
acts_upstream_of_or_within
ISO
MGI:2137037 (PMID:16319111)
RGD
PMID:16319111
NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
G
Sema3f
semaphorin 3F
acts_upstream_of_or_within
ISO
MGI:2670663 (PMID:16319111)
RGD
PMID:16319111
NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:15337776)
Ensembl RGD
PMID:15337776
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Nrp1
neuropilin 1
involved_in
ISO
(PMID:19386662)
RGD
PMID:19386662
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
G
Nrp2
neuropilin 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:19386662)
Ensembl RGD
PMID:19386662
GO_REF:0000107
NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
G
Sema3a
semaphorin 3A
involved_in
ISO
(PMID:19386662)
RGD
PMID:19386662
NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
G
Sema3f
semaphorin 3F
involved_in
ISO
(PMID:19386662)
RGD
PMID:19386662
NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083
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