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ONTOLOGY REPORT - ANNOTATIONS

Term:inner ear development
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Accession:GO:0048839 term browser browse the term
Definition:The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.


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inner ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3046273 (PMID:16775142) RGD PMID:16775142 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:13,067,150...13,647,372 		JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B acts_upstream_of_or_within ISO MGI:5003050 (PMID:21636789) RGD PMID:21636789 NCBI chr 5:65,538,872...65,561,305
Ensembl chr 5:65,538,535...65,561,437 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3767172 (PMID:21146598) 		Ensembl
RGD		 PMID:21146598 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO MGI:1857136 (PMID:7605630) RGD PMID:7605630 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:116,619,633...116,670,657 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:141,264,646...141,274,760 		JBrowse link
G Bmper BMP-binding endothelial regulator acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 8:30,008,049...30,253,201
Ensembl chr 8:30,008,148...30,434,359 		JBrowse link
G C1qb complement C1q B chain acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 5:154,402,276...154,407,827
Ensembl chr 5:154,402,279...154,407,840 		JBrowse link
G C1qtnf5 C1q and TNF related 5 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 8:53,347,754...53,349,912
Ensembl chr 8:53,347,711...53,349,912 		JBrowse link
G Ccm2 CCM2 scaffold protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr14:85,632,338...85,678,016
Ensembl chr14:85,632,001...85,678,028 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856681 (PMID:8790740)
MGI:1856228|MGI:3028349 (PMID:13336002), (PMID:14759567) 		Ensembl
RGD		 PMID:8790740 PMID:13336002 PMID:14759567 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:1857146 (PMID:10079221) RGD PMID:10079221 NCBI chr 4:169,491,273...169,496,500
Ensembl chr 4:169,490,876...169,496,498 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 1:96,896,584...96,899,256
Ensembl chr 1:96,896,171...96,899,309 		JBrowse link
G Cebpd CCAAT/enhancer binding protein delta acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr11:98,268,856...98,269,994
Ensembl chr11:98,265,651...98,280,824 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10100048) 		Ensembl
RGD		 PMID:10100048 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Cxcl14 C-X-C motif chemokine ligand 14 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr17:8,323,150...8,331,176
Ensembl chr17:8,323,143...8,331,172 		JBrowse link
G Cys1 cystin 1 acts_upstream_of_or_within ISO MGI:1856831 (PMID:1952600) RGD PMID:1952600 NCBI chr 6:47,029,440...47,046,671
Ensembl chr 6:47,028,461...47,046,671 		JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr14:77,278,635...77,283,645
Ensembl chr14:77,278,636...77,283,645 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Duox2 dual oxidase 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3712359 (PMID:17440044) 		Ensembl
RGD		 PMID:17440044 GO_REF:0000107 NCBI chr 3:129,680,543...129,698,886
Ensembl chr 3:129,680,546...129,699,203 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO 		GO_REF:0000024
(PMID:17765677) 		UniProt
RGD		 PMID:17765677 GO_REF:0000024 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:111,738,662...111,894,087 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 IEP RGD PMID:11159937 RGD:1598918 NCBI chr 1:23,991,431...24,235,132
Ensembl chr 1:23,991,431...24,235,131 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17117437) RGD PMID:17117437 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:81,211,800...81,227,209 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 2:139,753,055...139,891,046
Ensembl chr 2:139,753,055...139,891,046 		JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:35,375,977...35,393,817
Ensembl chr15:35,375,692...35,393,877 		JBrowse link
G Gjb6 gap junction protein, beta 6 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:35,400,147...35,410,649
Ensembl chr15:35,398,770...35,410,849 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98297 (PMID:17395647) 		Ensembl
RGD		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856991 (PMID:13336002) 		Ensembl
RGD		 PMID:13336002 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2152356 (PMID:18483557) 		Ensembl
RGD		 PMID:18483557 GO_REF:0000107 NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:82,689,566...82,691,701 		JBrowse link
G Hpca hippocalcin acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 5:146,739,978...146,750,961
Ensembl chr 5:146,739,978...146,749,983 		JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:24,130,137...24,246,764 		JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr14:31,091,681...31,151,623
Ensembl chr14:31,091,347...31,151,620 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19389353) 		Ensembl
RGD		 PMID:19389353 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:144,859,453...144,894,872 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:11120752), (PMID:15498462)
MGI:2389447 (PMID:15385447)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:11120752 PMID:15385447 PMID:15498462 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 7:52,973,151...53,107,964
Ensembl chr 7:52,974,332...53,108,163 		JBrowse link
G Lhx3 LIM homeobox 3 involved_in ISO
IEA 		(PMID:18407919)
GO_REF:0000107 		RGD
Ensembl		 PMID:18407919 GO_REF:0000107 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:29,424,620...29,432,637 		JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:44,473,568...44,629,074
Ensembl chr 7:44,473,347...44,625,208 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Lrp10 LDL receptor related protein 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr15:31,891,358...31,897,530
Ensembl chr15:31,891,362...31,897,528 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:60,269,541...60,621,378 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr13:45,066,027...45,112,326
Ensembl chr13:45,066,031...45,112,326 		JBrowse link
G Mnda myeloid cell nuclear differentiation antigen acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr13:88,550,224...88,567,892
Ensembl chr13:88,550,228...88,566,537 		JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (PMID:16041630) RGD PMID:16041630 NCBI chr 6:30,941,693...30,956,389
Ensembl chr 6:30,943,356...30,956,386 		JBrowse link
G Msx1 msh homeobox 1 involved_in ISO (PMID:7914451) RGD PMID:7914451 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:77,185,802...77,189,735 		JBrowse link
G Myo3a myosin IIIA acts_upstream_of_or_within ISO MGI:4849286 (PMID:21165622) RGD PMID:21165622 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:89,451,567...89,667,654 		JBrowse link
G Myo6 myosin VI acts_upstream_of_or_within ISO MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015) RGD PMID:5980120 PMID:7493015 PMID:10525338 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:89,967,377...90,122,215 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856716|MGI:1860092|MGI:2155423 (PMID:13336002), (PMID:14198707), (PMID:6627025), (PMID:9435277) 		Ensembl
RGD		 PMID:6627025 PMID:9435277 PMID:13336002 PMID:14198707 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11152640) 		UniProt
RGD		 PMID:11152640 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:84,764,725...84,770,810 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Nherf2 NHERF family PDZ scaffold protein 2 IEP RGD PMID:16160858 RGD:1643220 NCBI chr10:14,167,005...14,177,519
Ensembl chr10:14,167,005...14,177,593 		JBrowse link
G Pcdh15 protocadherin related 15 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000002
MGI:1855958|MGI:2151877|MGI:2183469 (PMID:10978835), (PMID:15811708)
GO_REF:0000107 		InterPro
RGD
Ensembl		 PMID:10978835 PMID:15811708 GO_REF:0000002 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,999,116...15,493,958 		JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15267171 RGD:2292167 NCBI chr12:20,759,366...20,780,337
Ensembl chr12:20,754,208...20,780,322 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEP RGD PMID:15267171 RGD:2292167 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,360,028...33,408,516 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:15267171 RGD:2292167 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:56,770,348...56,809,233 		JBrowse link
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO MGI:1926861 (PMID:12885554) RGD PMID:12885554 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,420,011...41,424,494 		JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta involved_in ISS
IBA
ISO
IEA 		GO_REF:0000024
GO_REF:0000033
(PMID:33358777)
GO_REF:0000107 		UniProt
GO_Central
RGD
Ensembl		 PMID:33358777 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:185,229,392...185,261,697
Ensembl chr 2:185,228,799...185,261,693 		JBrowse link
G Plppr4 phospholipid phosphatase related 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21795542) 		Ensembl
RGD		 PMID:21795542 GO_REF:0000107 NCBI chr 2:208,056,206...208,097,191
Ensembl chr 2:208,056,211...208,097,191 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 acts_upstream_of_or_within ISO MGI:1856631|MGI:1857990 (PMID:10587581), (PMID:15655183) RGD PMID:10587581 PMID:15655183 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:79,974,627...79,987,326 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857425 (PMID:9256502), (PMID:9735355) 		Ensembl
RGD		 PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,641,191...34,643,783 		JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2386336 (PMID:20186345) 		Ensembl
RGD		 PMID:20186345 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:104,200,378...104,250,975 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISO
IEA 		(PMID:12058348)
GO_REF:0000107 		RGD
Ensembl		 PMID:12058348 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:41,043,785...41,085,577 		JBrowse link
G Ror1 receptor tyrosine kinase-like orphan receptor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:27162350)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:27162350 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:119,859,744...120,203,573
Ensembl chr 5:119,859,970...120,205,801 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:12,124,749...12,300,044 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G RT1-A2 RT1 class Ia, locus A2 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,872,720...4,876,425 JBrowse link
G RT1-DMa RT1 class II, locus DMa acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,708,932...4,712,335
Ensembl chr20:4,708,933...4,712,335 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934261|MGI:95729 (PMID:17395647) 		Ensembl
RGD		 PMID:17395647 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19389353) 		Ensembl
RGD		 PMID:19389353 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Slc25a27 solute carrier family 25, member 27 IEP RGD PMID:21397696 RGD:6482846 NCBI chr 9:24,804,183...24,831,219
Ensembl chr 9:24,804,185...24,831,217 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18407919) RGD PMID:18407919 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP RGD PMID:11335086 RGD:2300061 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:40,017,075...40,039,268 		JBrowse link
G Stox1 storkhead box 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25677106) 		Ensembl
RGD		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:31,140,993...31,208,877 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:16479080 GO_REF:0000117, RGD:2302094 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEP
ISO
IEA 		(PMID:9217007)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:9217007 PMID:16479080 GO_REF:0000107 GO_REF:0000117, RGD:2302094 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:16479080 GO_REF:0000117, RGD:2302094 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:111,435,170...111,456,946 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
anterior semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856276 (PMID:17395647) 		Ensembl
RGD		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
auditory receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg10 ALG10, alpha-1,2-glucosyltransferase acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:123,214,636...123,225,104
Ensembl chr 7:123,214,636...123,225,104 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3850171 (PMID:19414487) 		Ensembl
RGD		 PMID:19414487 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:145,233,941...145,280,855 		JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6455516 (PMID:31628468) 		Ensembl
RGD		 PMID:31628468 GO_REF:0000107 NCBI chr 4:106,172,819...106,211,286
Ensembl chr 4:106,172,828...106,211,229 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574787 (PMID:15630379) 		Ensembl
RGD		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:2680653 (PMID:26084842) 		Ensembl
RGD		 PMID:26084842 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G Lrtomt leucine rich transmembrane and O-methyltransferase domain containing involved_in IEA
ISO 		GO_REF:0000107
(PMID:18794526) 		Ensembl
RGD		 PMID:18794526 GO_REF:0000107 NCBI chr 1:165,678,654...165,680,703
Ensembl chr 1:165,678,654...165,680,703 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23533177) 		Ensembl
RGD		 PMID:23533177 GO_REF:0000107 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:60,032,514...60,090,196 		JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4433578 (PMID:24334608) 		Ensembl
RGD		 PMID:24334608 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:253,837,459...253,855,999 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2682641 (PMID:12808454) 		GO_Central
RGD		 PMID:12808454 GO_REF:0000033 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:13,015,854...13,095,292 		JBrowse link
G Tmc1 transmembrane channel-like 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5427097 (PMID:22105175) 		Ensembl
RGD		 PMID:22105175 GO_REF:0000107 NCBI chr 1:227,701,781...227,872,534
Ensembl chr 1:227,701,781...227,872,534 		JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in NAS PMID:10878608 UniProt PMID:10878608 RGD:8553270 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in ISS
ISO
IEA 		PMID:10080181
(PMID:10080181)
GO_REF:0000107 		RGD
Ensembl		 PMID:10080181 PMID:10080181 GO_REF:0000107, RGD:8553713 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:137,804,133...137,826,738 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3044585|MGI:3046196 (PMID:19154718) 		Ensembl
RGD		 PMID:19154718 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3046196|MGI:3583755 (PMID:19154718) RGD PMID:19154718 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:61,551,366...61,736,307 		JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:16407553) 		Ensembl
RGD		 PMID:16407553 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2155983 (PMID:10364557) 		Ensembl
RGD		 PMID:10364557 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (PMID:19363478) RGD PMID:19363478 NCBI chr 4:59,755,841...59,755,946 JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4417931 (PMID:19936227) 		Ensembl
RGD		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:93,969,038...93,984,526 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5558098 (PMID:24302887) 		Ensembl
RGD		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:99,847,632...100,200,287 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in IEA
ISO 		GO_REF:0000107
(PMID:35175278) 		Ensembl
RGD		 PMID:35175278 GO_REF:0000107 NCBI chr 7:8,712,720...8,731,910
Ensembl chr 7:8,712,722...8,731,910 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856681|MGI:1891428|MGI:2154548 (PMID:11138008), (PMID:15537665), (PMID:17050716), (PMID:7610888), (PMID:8790740)
MGI:1856228|MGI:1856681|MGI:2154548|MGI:2154549 (PMID:11322776), (PMID:12121736), (PMID:23217710), (PMID:9039475) 		Ensembl
RGD		 PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:24,208,456...24,358,780 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3850171 (PMID:19414487), (PMID:19423712) 		Ensembl
RGD		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:145,233,941...145,280,855 		JBrowse link
G Clrn2 clarin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33496845) 		Ensembl
RGD		 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:69,868,556...69,878,850 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:35235570) 		Ensembl
RGD		 PMID:35235570 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417) 		Ensembl
RGD		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:34,235,734...34,371,894 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3718054 (PMID:17876667), (PMID:23217710)
MGI:3055797 (PMID:15905332) 		Ensembl
RGD		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,633,979...6,644,657 		JBrowse link
G Myo3a myosin IIIA involved_in IEA
ISO 		GO_REF:0000117
MGI:2448580 (PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:89,451,567...89,667,654 		JBrowse link
G Myo3b myosin IIIB involved_in IEA
ISO 		GO_REF:0000117
MGI:2183924 (PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:75,228,017...75,636,272 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736)
(PMID:17050716) 		Ensembl
RGD		 PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,901,227...100,919,579 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856394|MGI:3505691 (PMID:16887306), (PMID:23217710)
MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877 (PMID:10978835), (PMID:11124469), (PMID:15537665) 		Ensembl
RGD		 PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,999,116...15,493,958 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:4433578 (PMID:24334608)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:253,837,459...253,855,999 		JBrowse link
G Pls1 plastin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25124451) 		Ensembl
RGD		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:105,197,455...105,292,447 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:29961578) 		UniProt
RGD		 PMID:29961578 GO_REF:0000024 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:31,213,415...31,248,662 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) RGD PMID:27269051 NCBI chr17:40,751,771...40,975,611
Ensembl chr17:40,751,771...40,975,337 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:1857872 (PMID:10464373), (PMID:10466888)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:42,942,678...42,948,399 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
(PMID:21165971)
MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007) 		Ensembl
RGD		 PMID:18849963 PMID:21165971 PMID:30801007 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:128,789,290...128,808,023 		JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153816 (PMID:30801007) 		Ensembl
RGD		 PMID:30801007 GO_REF:0000107 NCBI chr 8:51,604,974...51,676,745
Ensembl chr 8:51,604,975...51,676,722 		JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:2685697 (PMID:30380417)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:30380417 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:28,473,620...28,482,117 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:112,386,420...112,442,924 		JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:4432119 (PMID:27117407)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:81,843,820...81,927,381 		JBrowse link
cochlea development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 involved_in IEA
ISO 		GO_REF:0000107
(PMID:30639848) 		Ensembl
RGD		 PMID:30639848 GO_REF:0000107 NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:80,226,674...80,361,600 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 involved_in ISO (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Calb1 calbindin 1 IEP RGD PMID:16120789 RGD:7175527 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:34,172,664...34,200,160 		JBrowse link
G Ccna2 cyclin A2 IEP RGD PMID:19429027 RGD:10054469 NCBI chr 2:121,355,363...121,361,762
Ensembl chr 2:121,355,363...121,361,701 		JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within
involved_in 		ISO MGI:2389021|MGI:3841145 (PMID:21925491)
(PMID:30639848) 		RGD PMID:21925491 PMID:30639848 NCBI chr19:51,402,178...51,471,572
Ensembl chr19:51,402,034...51,471,565 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856228 (PMID:13336002) 		Ensembl
RGD		 PMID:13336002 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574034 (PMID:21246654) 		Ensembl
RGD		 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4867020 (PMID:21303848) 		Ensembl
RGD		 PMID:21303848 GO_REF:0000107 NCBI chr 1:169,516,758...169,550,789
Ensembl chr 1:169,516,762...169,536,639 		JBrowse link
G Epha4 Eph receptor A4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:30639848) 		Ensembl
RGD		 PMID:30639848 GO_REF:0000107 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:86,263,982...86,406,755 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17557302) RGD PMID:17557302 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:81,211,800...81,227,209 		JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17021187) 		Ensembl
RGD		 PMID:17021187 GO_REF:0000107 NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:117,404,494...117,516,635 		JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17021187) 		Ensembl
RGD		 PMID:17021187 GO_REF:0000107 NCBI chr10:27,438,127...27,657,680
Ensembl chr10:27,438,238...27,655,171 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 involved_in ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:117,431,842...117,836,725 		JBrowse link
G Gata2 GATA binding protein 2 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:122,211,829...122,225,055 		JBrowse link
G Gata3 GATA binding protein 3 IEP RGD PMID:20006695 RGD:9479067 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:73,553,548...73,575,670 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856991 (PMID:13336002) 		Ensembl
RGD		 PMID:13336002 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1341884|MGI:2149672 (PMID:18302773) 		Ensembl
RGD		 PMID:18302773 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104853|MGI:104876|MGI:2447620 (PMID:18302773) 		Ensembl
RGD		 PMID:18302773 GO_REF:0000107 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:28,641,057...28,651,187 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3817268 (PMID:25605782) 		Ensembl
RGD		 PMID:25605782 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,930,681...63,936,172 		JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:111,619,145...111,635,129
Ensembl chr 7:111,619,077...111,634,936 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2135272 (PMID:18066062) RGD PMID:18066062 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634 		JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 IEP RGD PMID:15094499 RGD:2316534 NCBI chr13:103,297,387...103,494,686
Ensembl chr13:103,297,393...103,494,686 		JBrowse link
G Kcnk3 potassium two pore domain channel subfamily K member 3 IEP RGD PMID:15094499 RGD:2316534 NCBI chr 6:31,483,129...31,519,061
Ensembl chr 6:31,483,140...31,519,061 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:1931858 (PMID:15891643) 		Ensembl
RGD		 PMID:15891643 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in ISO
IEA 		(PMID:26196677)
GO_REF:0000107 		RGD
Ensembl		 PMID:26196677 GO_REF:0000107 NCBI chr 4:122,903,679...122,918,205
Ensembl chr 4:122,903,682...122,918,094 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:18420419 RGD:2317082 NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:77,853,736...77,964,338 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856716 (PMID:13336002), (PMID:14198707), (PMID:6627025) 		Ensembl
RGD		 PMID:6627025 PMID:13336002 PMID:14198707 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10494076 RGD:2325650 NCBI chr 1:141,526,192...141,913,575
Ensembl chr 1:141,542,569...141,913,004 		JBrowse link
G Ocm oncomodulin involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:16120789 GO_REF:0000117, RGD:7175527 NCBI chr12:15,649,452...15,710,375
Ensembl chr12:15,676,520...15,710,379 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:17828551 RGD:13208944 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:84,615,340...84,689,955 		JBrowse link
G Otof otoferlin IEP RGD PMID:17229086 RGD:2316502 NCBI chr 6:31,647,869...31,744,476
Ensembl chr 6:31,647,914...31,744,476 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23533177) 		Ensembl
RGD		 PMID:23533177 GO_REF:0000107 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:60,032,514...60,090,196 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:8951055) 		UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:1888378 (PMID:17167097) RGD PMID:17167097 NCBI chr20:28,756,951...28,783,422
Ensembl chr20:28,757,181...28,783,421 		JBrowse link
G Pvalb parvalbumin involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:16120789 GO_REF:0000117, RGD:7175527 NCBI chr 7:111,653,820...111,668,469
Ensembl chr 7:111,653,111...111,668,446 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:22927466) RGD PMID:22927466 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:31,865,231...31,957,930 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:24064385 RGD:9999152 NCBI chr 7:25,881,557...25,936,837
Ensembl chr 7:25,881,557...25,935,410 		JBrowse link
G Slc26a5 solute carrier family 26 member 5 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:14,102,492...14,141,520
Ensembl chr 4:14,102,492...14,141,847 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4417931 (PMID:19936227) 		Ensembl
RGD		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:93,969,038...93,984,526 		JBrowse link
G Sobp sine oculis binding protein homolog involved_in IEA
ISO 		GO_REF:0000107
(PMID:18579736) 		Ensembl
RGD		 PMID:18579736 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:48,064,445...48,243,607 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98715 (PMID:18066062) 		Ensembl
RGD		 PMID:18066062 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1915838 (PMID:18606138) 		Ensembl
RGD		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:72,007,372...72,017,654 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:106613 (PMID:16116426) 		Ensembl
RGD		 PMID:16116426 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:171,739,133...171,750,966 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950) 		Ensembl
RGD		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:55,222,056...55,231,506 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (PMID:19008950) RGD PMID:19008950 NCBI chr11:93,869,834...93,887,013
Ensembl chr11:93,869,834...93,886,903 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98958 (PMID:17433286) 		Ensembl
RGD		 PMID:17433286 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:85,739,165...85,772,096 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:20940229) 		Ensembl
RGD		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:88,061,667...88,065,396 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17395647) RGD PMID:17395647 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:20643356) 		Ensembl
RGD		 PMID:20643356 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:153,057,760...153,089,890 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Hpn hepsin involved_in ISS
ISO 		GO_REF:0000024
(PMID:20683358) 		UniProt
RGD		 PMID:20683358 GO_REF:0000024 NCBI chr 1:95,464,468...95,480,169
Ensembl chr 1:95,464,470...95,480,199 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Myo3a myosin IIIA involved_in IEA
ISO 		GO_REF:0000117
(PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:89,451,567...89,667,654 		JBrowse link
G Myo3b myosin IIIB involved_in IEA
ISO 		GO_REF:0000117
(PMID:26754646) 		UniProt
RGD		 PMID:26754646 GO_REF:0000117 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:75,228,017...75,636,272 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21798896) 		Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:52,998,662...53,086,664 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21798896) 		Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:67,827,137...67,871,383 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:1857673 (PMID:16916509) 		UniProt
RGD		 PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:P70323 (PMID:18231833) 		UniProt
RGD		 PMID:18231833 GO_REF:0000024 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:79,974,627...79,987,326 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3640803 (PMID:20704721) 		Ensembl
RGD		 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:21,849,801...21,916,078 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2655195 (PMID:12874121) 		Ensembl
RGD		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:2385468|MGI:3841145 (PMID:20346939)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
UniProtKB:P62515 (PMID:18231833)
MGI:2179136 (PMID:17825816) 		UniProt
RGD		 PMID:17825816 PMID:18231833 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:97,531,960...97,559,965 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:71,177,082...71,186,275 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10575115) 		Ensembl
RGD		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:116,072,281...116,206,010 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229) 		Ensembl
RGD		 PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857617|MGI:2135272 (PMID:17433286) 		Ensembl
RGD		 PMID:17433286 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:56,644,397...56,810,745 		JBrowse link
inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:15543141)
MGI:2155983|MGI:2155984 (PMID:11973280), (PMID:15543141) 		Ensembl
RGD		 PMID:11973280 PMID:15543141 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856228 (PMID:12121736) 		Ensembl
RGD		 PMID:12121736 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Clrn2 clarin 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5792002|MGI:6458758 (PMID:31448880) 		Ensembl
RGD		 PMID:31448880 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:69,868,556...69,878,850 		JBrowse link
G Cux1 cut-like homeobox 1 acts_upstream_of_or_within ISO MGI:2388352 (PMID:11544187) RGD PMID:11544187 NCBI chr12:25,728,393...26,062,497
Ensembl chr12:25,743,733...26,062,497 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:122,164,454...122,224,493 		JBrowse link
G Fgf20 fibroblast growth factor 20 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:58,734,003...58,741,650
Ensembl chr16:58,734,003...58,741,627 		JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 acts_upstream_of_or_within ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:117,404,494...117,516,635 		JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 acts_upstream_of_or_within ISO (PMID:17021187) RGD PMID:17021187 NCBI chr10:27,438,127...27,657,680
Ensembl chr10:27,438,238...27,655,171 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 acts_upstream_of_or_within ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:117,431,842...117,836,725 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,187,286...2,196,730 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2681910 (PMID:12405956) 		Ensembl
RGD		 PMID:12405956 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Gsdme gasdermin E acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:80,590,344...80,651,943
Ensembl chr 4:80,588,614...80,641,525 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA 		MGI:1932522|MGI:3623344 (PMID:16495313)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:16495313 PMID:10887092 GO_REF:0000107 GO_REF:0000117, RGD:1582345 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:144,859,453...144,894,872 		JBrowse link
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 acts_upstream_of_or_within ISO MGI:3050114 (PMID:15328414), (PMID:17074442) RGD PMID:15328414 PMID:17074442 NCBI chr15:351,065...1,057,117
Ensembl chr15:351,659...1,057,117 		JBrowse link
G Mcoln3 mucolipin TRP cation channel 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856230 (PMID:12403827) 		Ensembl
RGD		 PMID:12403827 GO_REF:0000107 NCBI chr 2:237,596,544...237,705,770
Ensembl chr 2:237,626,302...237,705,769 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:54,737,670...54,752,388
Ensembl chr18:54,737,662...54,752,384 		JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015) 		GO_Central
RGD		 PMID:5980120 PMID:7493015 PMID:10525338 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:89,967,377...90,122,215 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:12121736), (PMID:15389316) 		Ensembl
RGD		 PMID:11753415 PMID:12121736 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856394 (PMID:16481439) 		Ensembl
RGD		 PMID:16481439 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,999,116...15,493,958 		JBrowse link
G Pls3 plastin 3 IEP RGD PMID:12378542 RGD:731234 NCBI chr  X:116,401,247...116,495,898
Ensembl chr  X:116,401,293...116,495,893 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857425|MGI:2176270 (PMID:12585968), (PMID:8637595) 		Ensembl
RGD		 PMID:8637595 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,641,191...34,643,783 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Ush2a usherin acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:102,368,783...103,035,217 		JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:11921339) RGD PMID:11921339 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,760,743...61,959,467 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3043947 (PMID:23536097) 		Ensembl
RGD		 PMID:23536097 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:129,392,516...129,427,777 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2155983|MGI:2155984 (PMID:15543141), (PMID:16145671) 		Ensembl
RGD		 PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in 		ISS
ISO 		GO_REF:0000024
(PMID:12782355)
(PMID:19639346) 		UniProt
RGD		 PMID:12782355 PMID:19639346 GO_REF:0000024 NCBI chr 4:117,781,444...117,800,103
Ensembl chr 4:117,781,444...117,800,103 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:24413176) 		Ensembl
RGD		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:38,002,305...38,526,212 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:11921339) RGD PMID:11921339 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,468,732...13,596,333 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856681|MGI:2665714 (PMID:15925194), (PMID:7610888) 		Ensembl
RGD		 PMID:7610888 PMID:15925194 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (PMID:12842012) RGD PMID:12842012 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:118,867,450...119,004,856 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:15300250)
MGI:3511552 (PMID:15353999)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:15300250 PMID:15353999 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:26,609,407...26,792,734 		JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3774038 (PMID:18077337) 		Ensembl
RGD		 PMID:18077337 GO_REF:0000107 NCBI chr 1:165,898,932...165,905,348
Ensembl chr 1:165,899,261...165,903,458 		JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2158742 (PMID:18077337) 		Ensembl
RGD		 PMID:18077337 GO_REF:0000107 NCBI chr14:42,588,948...42,595,669
Ensembl chr14:42,588,948...42,595,669 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:1952599) RGD PMID:1952599 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857275 (PMID:9165353) 		Ensembl
RGD		 PMID:9165353 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:101927|MGI:2180474 (PMID:12142028), (PMID:16900517) 		Ensembl
RGD		 PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:35,965,579...35,969,845 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:101926 (PMID:16900517) 		Ensembl
RGD		 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,951,005...35,956,354
Ensembl chr 4:35,951,005...35,956,354 		JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:10,167,091...10,177,719 		JBrowse link
G Ephb2 Eph receptor B2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:10839360) 		Ensembl
RGD		 PMID:10839360 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (PMID:10471511), (PMID:15817220), (PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1347464|MGI:1859647 (PMID:11062007), (PMID:16691564) 		Ensembl
RGD		 PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1345138 (PMID:15809037) 		Ensembl
RGD		 PMID:15809037 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:15328018) RGD PMID:15328018 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:36,325,599...36,367,926 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153351 (PMID:12194867) 		Ensembl
RGD		 PMID:12194867 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:10934262) RGD PMID:10934262 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (PMID:16691564) RGD PMID:16691564 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:72,394,239...72,427,392 		JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2448634 (PMID:12642503) 		Ensembl
RGD		 PMID:12642503 GO_REF:0000107 NCBI chr10:19,310,466...19,314,405
Ensembl chr10:19,310,482...19,314,405 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98958 (PMID:18991062) 		Ensembl
RGD		 PMID:18991062 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:85,739,165...85,772,096 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108474 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:43,596,965...43,663,960 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108476 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:71,939,973...71,971,680 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4818492 (PMID:20652952) 		Ensembl
RGD		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:122,211,829...122,225,055 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2153826|MGI:2181200 (PMID:11135239), (PMID:21553382) 		Ensembl
RGD		 PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:73,553,548...73,575,670 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857634 (PMID:15829521), (PMID:15996652) 		Ensembl
RGD		 PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:97,957,304...97,959,883 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,187,286...2,196,730 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:107160|MGI:2154542 (PMID:11748138), (PMID:15363417) 		Ensembl
RGD		 PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,749,284...195,758,347
Ensembl chr 1:195,749,284...195,756,945 		JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:107159|MGI:1857577 (PMID:15363417), (PMID:9435283) 		Ensembl
RGD		 PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,743,411...195,745,375
Ensembl chr 1:195,743,271...195,746,444 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:8,049,556...8,057,778 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1916289 (PMID:16955138) 		Ensembl
RGD		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:35,025,164...35,047,658 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2181699 (PMID:10742111) 		Ensembl
RGD		 PMID:10742111 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:80,213,143...80,410,633 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:2680653 (PMID:11226272) 		Ensembl
RGD		 PMID:11226272 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 acts_upstream_of_or_within ISO MGI:3618993 (PMID:16437162) RGD PMID:16437162 NCBI chr 5:139,560,366...139,612,212
Ensembl chr 5:139,560,366...139,612,102 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856419 (PMID:16325169) 		Ensembl
RGD		 PMID:16325169 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:169,416,945...169,419,975 		JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857036 (PMID:11718241), (PMID:14724386) 		Ensembl
RGD		 PMID:11718241 PMID:14724386 GO_REF:0000107 NCBI chr10:45,776,907...45,835,473
Ensembl chr10:45,776,907...45,835,473 		JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1856555 (PMID:7493015) 		GO_Central
RGD		 PMID:7493015 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:89,967,377...90,122,215 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:15389316), (PMID:5795329) 		Ensembl
RGD		 PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
MGI:2183171 (PMID:16145671)
GO_REF:0000107 		RGD
Ensembl		 PMID:16145671 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:67,157,375...67,198,285 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO MGI:2137018 (PMID:17616930) RGD PMID:17616930 NCBI chr10:53,398,852...53,597,595
Ensembl chr10:53,398,852...53,584,060 		JBrowse link
G Otop1 otopetrin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856638|MGI:2655558 (PMID:12651873) 		Ensembl
RGD		 PMID:12651873 GO_REF:0000107 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:76,716,329...76,744,785 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:2136272|MGI:97451 (PMID:10225993)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:10225993 GO_REF:0000107 GO_REF:0000117 NCBI chr14:100,283,406...100,290,421
Ensembl chr14:100,283,406...100,290,421 		JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:97450 (PMID:10225993) 		UniProt
RGD		 PMID:10225993 GO_REF:0000117 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:24,422,876...24,432,472 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:109344|MGI:1857673 (PMID:15242798), (PMID:16916509) 		UniProt
RGD		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pax8 paired box 8 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P32114 (PMID:20727173) 		Ensembl
RGD		 PMID:20727173 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:27,584,002...27,640,631 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857425 (PMID:12585968) 		Ensembl
RGD		 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,641,191...34,643,783 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98218 (PMID:9729491) 		Ensembl
RGD		 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:78,136,783...78,204,058 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:34,520,173...34,566,284 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2679316 (PMID:14534255) 		Ensembl
RGD		 PMID:14534255 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:44,720,916...44,903,291 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:18606138) RGD PMID:18606138 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:12,124,749...12,300,044 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:106034 (PMID:15788460) 		Ensembl
RGD		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:97,538,202...97,551,872 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4417931 (PMID:19936227) 		Ensembl
RGD		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:93,969,038...93,984,526 		JBrowse link
G Sobp sine oculis binding protein homolog involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:1856614 (PMID:16962269)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:16962269 GO_REF:0000033 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:48,064,445...48,243,607 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:119,454,541...119,496,350 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578633|MGI:99604 (PMID:15809037) 		Ensembl
RGD		 PMID:15809037 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:89,103,731...89,115,074 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (PMID:12913075), (PMID:15084464), (PMID:15652707), (PMID:16600992) 		UniProt
RGD		 PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q60707 (PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO 		GO_REF:0000024
(PMID:21204207) 		UniProt
RGD		 PMID:21204207 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1857053 (PMID:12140191) 		GO_Central
RGD		 PMID:12140191 GO_REF:0000033 NCBI chr 8:119,728,123...119,743,219
Ensembl chr 8:119,728,313...119,743,219 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2450561 (PMID:12588793), (PMID:1927362) 		Ensembl
RGD		 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:101,057,208...101,062,564 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98956 (PMID:15961523) 		Ensembl
RGD		 PMID:15961523 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:131,817,558...131,821,605 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98953 (PMID:15961523) 		Ensembl
RGD		 PMID:15961523 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18991062) 		Ensembl
RGD		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
inner ear receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8b1 ATPase phospholipid transporting 8B1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19478059) 		Ensembl
RGD		 PMID:19478059 GO_REF:0000107 NCBI chr18:60,286,605...60,427,862
Ensembl chr18:60,288,464...60,427,027 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:19416898) RGD PMID:19416898 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:129,396,014...129,457,252 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:20940229) 		Ensembl
RGD		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:88,061,667...88,065,396 		JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17021187) 		Ensembl
RGD		 PMID:17021187 GO_REF:0000107 NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:117,404,494...117,516,635 		JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17021187) 		Ensembl
RGD		 PMID:17021187 GO_REF:0000107 NCBI chr10:27,438,127...27,657,680
Ensembl chr10:27,438,238...27,655,171 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 involved_in ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:117,431,842...117,836,725 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:11276175) 		Ensembl
RGD		 PMID:11276175 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934018 (PMID:17712420) 		Ensembl
RGD		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,501,836...86,509,315 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856914 (PMID:10575115) 		Ensembl
RGD		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:116,072,281...116,206,010 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1888513 (PMID:20940229) 		Ensembl
RGD		 PMID:20940229 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:95524 (PMID:17555714) RGD PMID:17555714 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Diaph3 diaphanous-related formin 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:23441200) 		Ensembl
RGD		 PMID:23441200 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:68,951,989...69,421,552 		JBrowse link
G Fgf20 fibroblast growth factor 20 acts_upstream_of_or_within ISO (PMID:18524904) RGD PMID:18524904 NCBI chr16:58,734,003...58,741,650
Ensembl chr16:58,734,003...58,741,627 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521|MGI:88180 (PMID:17117437), (PMID:17555714) RGD PMID:17117437 PMID:17555714 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:81,211,800...81,227,209 		JBrowse link
G Gsdme gasdermin E acts_upstream_of_or_within ISO MGI:3583715 (PMID:16023581) RGD PMID:16023581 NCBI chr 4:80,590,344...80,651,943
Ensembl chr 4:80,588,614...80,641,525 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:54,737,670...54,752,388
Ensembl chr18:54,737,662...54,752,384 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856716|MGI:1860092|MGI:2155417|MGI:2155420|MGI:2155421|MGI:2155422|MGI:2155423 (PMID:9435277), (PMID:9680294) 		Ensembl
RGD		 PMID:9435277 PMID:9680294 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857425 (PMID:9256502), (PMID:9735355) 		Ensembl
RGD		 PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,641,191...34,643,783 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856575|MGI:2450561 (PMID:12588793), (PMID:1442008), (PMID:1763621), (PMID:1927362) 		Ensembl
RGD		 PMID:1442008 PMID:1763621 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:101,057,208...101,062,564 		JBrowse link
inner ear receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3527179|MGI:3718538 (PMID:17295842), (PMID:17567809) RGD PMID:17295842 PMID:17567809 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:13,067,150...13,647,372 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:21071598) RGD PMID:21071598 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:119,683,076...119,783,471 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2154548 (PMID:18339676) 		Ensembl
RGD		 PMID:18339676 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,783,564...29,165,332 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574034|MGI:4829945 (PMID:21246654) 		Ensembl
RGD		 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Clic5 chloride intracellular channel 5 involved_in ISO (PMID:24285636) RGD PMID:24285636 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:24,208,456...24,358,780 		JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1915838 (PMID:18606138) 		Ensembl
RGD		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:72,007,372...72,017,654 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3846573 (PMID:21303848) 		Ensembl
RGD		 PMID:21303848 GO_REF:0000107 NCBI chr 2:123,855,289...123,984,716
Ensembl chr 2:123,855,289...123,984,716 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:20137774)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:20137774 GO_REF:0000033 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6281113|MGI:6281114 (PMID:30380417) 		Ensembl
RGD		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:34,235,734...34,371,894 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104876|MGI:1341800 (PMID:21300049) 		Ensembl
RGD		 PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO MGI:104853|MGI:1341800 (PMID:21300049) RGD PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:104853|MGI:104876 (PMID:21300049) RGD PMID:21300049 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:95,002,943...95,007,624 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3817268 (PMID:25605782) 		Ensembl
RGD		 PMID:25605782 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,930,681...63,936,172 		JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:111,619,145...111,635,129
Ensembl chr 7:111,619,077...111,634,936 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1932522|MGI:2135272|MGI:3710185 (PMID:18066062) RGD PMID:18066062 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2386464 (PMID:18066062) RGD PMID:18066062 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:38,226,741...38,260,516 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:54,737,670...54,752,388
Ensembl chr18:54,737,662...54,752,384 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4887578 (PMID:21045211) 		Ensembl
RGD		 PMID:21045211 GO_REF:0000107 NCBI chr10:73,152,599...73,167,451
Ensembl chr10:73,153,186...73,163,886 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2155422 (PMID:18339676) 		Ensembl
RGD		 PMID:18339676 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:161,755,110...161,825,365 		JBrowse link
G Otog otogelin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:31776257) 		Ensembl
RGD		 PMID:31776257 GO_REF:0000107 NCBI chr 1:105,882,747...105,951,825
Ensembl chr 1:105,882,747...105,951,824 		JBrowse link
G Otogl otogelin-like acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:31776257) 		Ensembl
RGD		 PMID:31776257 GO_REF:0000107 NCBI chr 7:44,952,633...45,097,869
Ensembl chr 7:44,953,399...45,110,055 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856394 (PMID:18339676) 		Ensembl
RGD		 PMID:18339676 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,999,116...15,493,958 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:5056373 (PMID:21515572) RGD PMID:21515572 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:23760952) 		Ensembl
RGD		 PMID:23760952 GO_REF:0000107 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:173,574,239...173,593,670 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:31776257) 		Ensembl
RGD		 PMID:31776257 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:128,789,290...128,808,023 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3836913 (PMID:25605782) 		Ensembl
RGD		 PMID:25605782 GO_REF:0000107 NCBI chr 6:126,760,263...126,832,619
Ensembl chr 6:126,760,265...126,832,570 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10575115) 		Ensembl
RGD		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:116,072,281...116,206,010 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS
ISO 		GO_REF:0000024
(PMID:32127020) 		UniProt
RGD		 PMID:32127020 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:162,064,126...162,089,272 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5140723 (PMID:25605782) 		Ensembl
RGD		 PMID:25605782 GO_REF:0000107 NCBI chr 6:123,927,657...124,025,354
Ensembl chr 6:123,927,907...123,982,117 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3757683 (PMID:18339676) 		GO_Central
RGD		 PMID:18339676 GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:105,831,723...105,880,082 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856575 (PMID:18339676) 		Ensembl
RGD		 PMID:18339676 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:101,057,208...101,062,564 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1349164|MGI:1857642|MGI:98715 (PMID:18066062), (PMID:18606138), (PMID:23760952) 		Ensembl
RGD		 PMID:18066062 PMID:18606138 PMID:23760952 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
G Whrn whirlin involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:12124769), (PMID:17326148)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:12124769 PMID:17326148 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:81,843,820...81,927,381 		JBrowse link
lateral semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856276 (PMID:17395647) 		Ensembl
RGD		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
negative regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104876|MGI:1341800|MGI:2149672 (PMID:11023859), (PMID:11425898), (PMID:21300049) 		Ensembl
RGD		 PMID:11023859 PMID:11425898 PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO MGI:104853|MGI:1341800|MGI:2149674 (PMID:11425898), (PMID:21300049) RGD PMID:11425898 PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3044585 (PMID:25535395) 		Ensembl
RGD		 PMID:25535395 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
negative regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12208538) 		Ensembl
RGD		 PMID:12208538 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:12208538) RGD PMID:12208538 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain involved_in IEA
ISO 		GO_REF:0000107
(PMID:9119111) 		Ensembl
RGD		 PMID:9119111 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780 (PMID:22513373) RGD PMID:22513373 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2181200 (PMID:11135239) 		Ensembl
RGD		 PMID:11135239 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:73,553,548...73,575,670 		JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO MGI:5911419|MGI:6117117 (PMID:27458190) RGD PMID:27458190 NCBI chr11:48,915,298...48,929,235
Ensembl chr11:48,915,289...48,929,416 		JBrowse link
G Pax8 paired box 8 involved_in ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:27,584,002...27,640,631 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:109344|MGI:2655195 (PMID:16916509), (PMID:22513373) 		Ensembl
RGD		 PMID:16916509 PMID:22513373 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in IEA
ISO 		GO_REF:0000107
(PMID:9119111) 		Ensembl
RGD		 PMID:9119111 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:14623822) 		Ensembl
RGD		 PMID:14623822 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:209,430,457...209,434,832 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:17601531) 		Ensembl
RGD		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (PMID:9435295) RGD PMID:9435295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1931124 (PMID:9620767) 		Ensembl
RGD		 PMID:9620767 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,198,589...2,200,694 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:1932522|MGI:2385468 (PMID:18377888)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,878,006...83,879,174
Ensembl chr10:83,876,939...83,879,483 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:16916509) RGD PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3046793 (PMID:17074316) RGD PMID:17074316 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
otolith development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3612279 (PMID:20577052) 		Ensembl
RGD		 PMID:20577052 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Nox3 NADPH oxidase 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856606 (PMID:10491954) 		Ensembl
RGD		 PMID:10491954 GO_REF:0000107 NCBI chr 1:46,643,277...46,708,109
Ensembl chr 1:46,642,564...46,708,109 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otop1 otopetrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:76,716,329...76,744,785 		JBrowse link
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,907,737...3,923,911
Ensembl chr20:3,907,737...3,923,854 		JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:148,450,207...148,696,239 		JBrowse link
G Oc90 otoconin 90 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21655225), (PMID:24748133) 		Ensembl
RGD		 PMID:21655225 PMID:24748133 GO_REF:0000107 NCBI chr 7:99,524,975...99,558,386
Ensembl chr 7:99,524,975...99,558,386 		JBrowse link
G Otol1 otolin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21655225), (PMID:24748133), (PMID:29076638) 		Ensembl
RGD		 PMID:21655225 PMID:24748133 PMID:29076638 GO_REF:0000107 NCBI chr 2:156,509,755...156,652,341
Ensembl chr 2:156,638,380...156,647,791 		JBrowse link
G Otop1 otopetrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:76,716,329...76,744,785 		JBrowse link
otolith mineralization completed early in development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (PMID:20577052) RGD PMID:20577052 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:5367369) RGD PMID:5367369 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,377,560...26,402,865 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:2443955 (PMID:24086156)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24086156 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:128,687,723...128,788,219
Ensembl chr 4:128,687,723...128,788,219 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:107935 (PMID:24086156)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:24086156 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:63,701,724...63,751,898
Ensembl chr 7:63,701,778...63,752,261 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:4,043,364...4,162,660
Ensembl chr18:4,080,391...4,165,315 		JBrowse link
positive regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:11023859), (PMID:19154718) 		Ensembl
RGD		 PMID:11023859 PMID:19154718 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:122,164,454...122,224,493 		JBrowse link
positive regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:3767172 (PMID:21146598)
(PMID:12208538) 		Ensembl
RGD		 PMID:12208538 PMID:21146598 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:95,241,933...95,244,019 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25677106) 		Ensembl
RGD		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:31,140,993...31,208,877 		JBrowse link
regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:104853|MGI:104876 (PMID:21300049) RGD PMID:21300049 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:95,002,943...95,007,624 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104654 (PMID:19154718) 		Ensembl
RGD		 PMID:19154718 GO_REF:0000107 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:28,641,057...28,651,187 		JBrowse link
G Mycl MYCL proto-oncogene, bHLH transcription factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97357 (PMID:23022312) 		Ensembl
RGD		 PMID:23022312 GO_REF:0000107 NCBI chr 5:140,559,843...140,566,704
Ensembl chr 5:140,560,152...140,566,699 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96799 (PMID:23022312) 		Ensembl
RGD		 PMID:23022312 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:41,446,684...41,452,508 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3044585 (PMID:25535395) 		Ensembl
RGD		 PMID:25535395 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esrp1 epithelial splicing regulatory protein 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:29107558) 		UniProt
RGD		 PMID:29107558 GO_REF:0000024 NCBI chr 5:29,224,831...29,279,381
Ensembl chr 5:29,225,360...29,279,278 		JBrowse link
semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata2 GATA binding protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4818492 (PMID:20652952) 		Ensembl
RGD		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:122,211,829...122,225,055 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1859647 (PMID:15765517) 		Ensembl
RGD		 PMID:15765517 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:98493 (PMID:19855134) 		Ensembl
RGD		 PMID:19855134 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:26,609,407...26,792,734 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:95517 (PMID:17601531) 		Ensembl
RGD		 PMID:17601531 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:52,533,939...52,610,980 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:209,430,457...209,434,832 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:67,157,375...67,198,285 		JBrowse link
G Sparc secreted protein acidic and cysteine rich involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:40,017,075...40,039,268 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2444748 (PMID:19855134) 		UniProt
RGD		 PMID:19855134 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:33795231) 		Ensembl
RGD		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:42,540,378...42,554,171 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:56,644,397...56,810,745 		JBrowse link
stereocilium maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clrn2 clarin 2 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
(PMID:33496845)
MGI:5792002|MGI:6458758 (PMID:31448880) 		Ensembl
RGD		 PMID:31448880 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:69,868,556...69,878,850 		JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6455516 (PMID:31628468) 		Ensembl
RGD		 PMID:31628468 GO_REF:0000107 NCBI chr 4:106,172,819...106,211,286
Ensembl chr 4:106,172,828...106,211,229 		JBrowse link
G Pjvk pejvakin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5014098|MGI:5925280 (PMID:28209736) 		Ensembl
RGD		 PMID:28209736 GO_REF:0000107 NCBI chr 3:82,002,106...82,012,273
Ensembl chr 3:82,002,368...82,012,451 		JBrowse link
G Tprn taperin involved_in ISS
ISO
IEA
IBA 		GO_REF:0000024
MGI:5897817 (PMID:27693694), (PMID:30159668), (PMID:37952086)
GO_REF:0000107
GO_REF:0000033 		UniProt
RGD
Ensembl
GO_Central		 PMID:27693694 PMID:30159668 PMID:37952086 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:28,473,620...28,482,117 		JBrowse link
vestibular receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:11276175) 		Ensembl
RGD		 PMID:11276175 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,358,077...40,480,493 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2679316 (PMID:22357859) 		Ensembl
RGD		 PMID:22357859 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:44,720,916...44,903,291 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25124451) 		Ensembl
RGD		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:105,197,455...105,292,447 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        inner ear development 258
          cochlea development + 71
          inner ear morphogenesis + 130
          inner ear receptor cell differentiation + 95
          otic vesicle development + 15
          otolith development + 12
          semicircular canal development + 12
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        animal organ development 3761
          sensory organ development 757
            ear development 290
              inner ear development 258
                cochlea development + 71
                inner ear morphogenesis + 130
                inner ear receptor cell differentiation + 95
                otic vesicle development + 15
                otolith development + 12
                semicircular canal development + 12
paths to the root