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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of muscle organ development
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Accession:GO:0048634 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of muscle development.


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regulation of muscle organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954 JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
negative regulation of cardiac muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf3 fibroblast growth factor 3 involved_in ISO
IEA 		(PMID:20702560)
GO_REF:0000107 		RGD
Ensembl		 PMID:20702560 GO_REF:0000107 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:209,430,457...209,434,832 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in ISO
IEA 		(PMID:20702560)
GO_REF:0000107 		RGD
Ensembl		 PMID:20702560 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
negative regulation of muscle organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 IDA RGD PMID:19057004 RGD:2306938 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,889,999...5,894,610 		JBrowse link
G Sfmbt1 Scm-like with four mbt domains 1 involved_in ISO
IEA
ISS 		(PMID:23349461)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:23349461 GO_REF:0000024 GO_REF:0000107 NCBI chr16:5,896,686...6,016,311
Ensembl chr16:5,897,187...6,011,934 		JBrowse link
negative regulation of skeletal muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nras NRAS proto-oncogene, GTPase acts_upstream_of_or_within ISO MGI:2676890 (PMID:20534588) RGD PMID:20534588 NCBI chr 2:193,271,399...193,282,023
Ensembl chr 2:193,271,430...193,278,543 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
IEA
ISS 		(PMID:9770491)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:9770491 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Tsc22d3 TSC22 domain family, member 3 acts_upstream_of_or_within ISO (PMID:20124407) RGD PMID:20124407 NCBI chr  X:109,006,410...109,066,389
Ensembl chr  X:109,006,420...109,015,519 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:7664846), (PMID:7958419) RGD PMID:7664846 PMID:7958419 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISS
ISO 		GO_REF:0000024
(PMID:21971047) 		UniProt
RGD		 PMID:21971047 GO_REF:0000024 NCBI chr 8:118,069,227...118,080,283
Ensembl chr 8:118,069,240...118,080,300 		JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in IDA PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr 8:53,308,264...53,336,800
Ensembl chr 8:53,308,303...53,336,794 		JBrowse link
G Ybx3 Y box binding protein 3 acts_upstream_of_or_within ISO (PMID:18676817) RGD PMID:18676817 NCBI chr 4:166,861,180...166,884,532
Ensembl chr 4:166,861,181...166,884,691 		JBrowse link
negative regulation of striated muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor IMP RGD PMID:16723531 RGD:1580249 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:116,619,633...116,670,657 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:14749725)
GO_REF:0000107 		RGD
Ensembl		 PMID:14749725 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Hdac7 histone deacetylase 7 involved_in TAS PMID:12711221 UniProt PMID:12711221 RGD:8553516 NCBI chr 7:130,803,013...130,841,181
Ensembl chr 7:130,803,013...130,841,017 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:16936075) 		Ensembl
RGD		 PMID:16936075 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:222,340,704...222,453,929 		JBrowse link
G Luc7l1 LUC7 pre-mRNA splicing factor like 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:15474286) 		Ensembl
RGD		 PMID:15474286 GO_REF:0000107 NCBI chr10:15,777,837...15,811,586
Ensembl chr10:15,777,829...15,817,940 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO
IEA 		(PMID:12887892)
GO_REF:0000107 		RGD
Ensembl		 PMID:12887892 GO_REF:0000107 NCBI chr 1:93,181,472...93,204,499
Ensembl chr 1:93,181,224...93,204,499 		JBrowse link
G Sox15 SRY-box transcription factor 15 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10821863) 		Ensembl
RGD		 PMID:10821863 GO_REF:0000107 NCBI chr10:54,871,793...54,873,497
Ensembl chr10:54,871,788...54,873,497 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:9520323) RGD PMID:9520323 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
negative regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:12399320)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:12399320 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
positive regulation of cardiac muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:24364879) 		Ensembl
RGD		 PMID:24364879 GO_REF:0000107 NCBI chr 9:73,397,333...73,466,339
Ensembl chr 9:73,397,306...73,466,339 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (PMID:24364879) RGD PMID:24364879 NCBI chr 7:1,579,079...1,600,379
Ensembl chr 7:1,579,816...1,601,120 		JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18178581) 		Ensembl
RGD		 PMID:18178581 GO_REF:0000107 NCBI chr 1:211,588,473...211,604,401
Ensembl chr 1:211,588,474...211,604,401 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857134 (PMID:11146504) RGD PMID:11146504 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:23,204,464...23,366,900 		JBrowse link
G Lmod3 leiomodin 3 involved_in ISO
IEA 		(PMID:25250574)
GO_REF:0000107 		RGD
Ensembl		 PMID:25250574 GO_REF:0000107 NCBI chr 4:131,400,643...131,415,411
Ensembl chr 4:131,400,423...131,415,342 		JBrowse link
G Myf5 myogenic factor 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:44,689,407...44,692,638
Ensembl chr 7:44,689,407...44,692,638 		JBrowse link
G Myf6 myogenic factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:44,699,469...44,701,313
Ensembl chr 7:44,699,469...44,701,313 		JBrowse link
G Myod1 myogenic differentiation 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:106,021,161...106,023,871
Ensembl chr 1:106,021,161...106,023,871 		JBrowse link
G Myog myogenin involved_in ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:8393145)
GO_REF:0000033
GO_REF:0000107 		UniProt
RGD
GO_Central
Ensembl		 PMID:8393145 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:48,297,476...48,300,065
Ensembl chr13:48,297,235...48,300,065 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21156168) 		Ensembl
RGD		 PMID:21156168 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
positive regulation of skeletal muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2653120 (PMID:15572127) 		Ensembl
RGD		 PMID:15572127 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:42,033,042...42,119,345 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23460868) 		Ensembl
RGD		 PMID:23460868 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IMP RGD PMID:19388010 RGD:2317940 NCBI chr 2:29,732,163...29,754,276
Ensembl chr 2:29,720,553...29,754,533 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO
ISS 		(PMID:9770491)
GO_REF:0000024 		RGD
UniProt		 PMID:9770491 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:15,708,924...15,871,640 		JBrowse link
G Mir214 microRNA 214 acts_upstream_of_or_within ISO MGI:97376 (PMID:20534588) RGD PMID:20534588 NCBI chr13:77,121,645...77,121,752
Ensembl chr13:77,121,643...77,121,752 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3029359 (PMID:23926128) 		Ensembl
RGD		 PMID:23926128 GO_REF:0000107 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:55,967,351...56,003,450 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857796|MGI:1861186 (PMID:11171399) 		Ensembl
RGD		 PMID:11171399 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in IDA PMID:10938131 UniProt PMID:10938131 RGD:634247 NCBI chr 8:53,308,264...53,336,800
Ensembl chr 8:53,308,303...53,336,794 		JBrowse link
G Wnt3a Wnt family member 3A involved_in IEA
ISO 		GO_REF:0000107
(PMID:11856745) 		Ensembl
RGD		 PMID:11856745 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919 		JBrowse link
positive regulation of skeletal muscle tissue growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18178581), (PMID:24234654) 		Ensembl
RGD		 PMID:18178581 PMID:24234654 GO_REF:0000107 NCBI chr 1:211,588,473...211,604,401
Ensembl chr 1:211,588,474...211,604,401 		JBrowse link
G Adrb2 adrenoceptor beta 2 IMP RGD PMID:16177600 RGD:1598747 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:57,911,348...57,914,803 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:25220152) 		UniProt
RGD		 PMID:25220152 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Igf2 insulin-like growth factor 2 involved_in ISO (PMID:29440408) RGD PMID:29440408 NCBI chr 1:207,243,873...207,261,263
Ensembl chr 1:207,243,873...207,260,667 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:6,234,922...6,252,961 		JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 IMP RGD PMID:16408196 RGD:1643018 NCBI chr10:71,817,794...71,865,211
Ensembl chr10:71,815,614...71,865,238 		JBrowse link
positive regulation of striated muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:2676327 (PMID:15601660) RGD PMID:15601660 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:36,302,352...36,319,689 		JBrowse link
G Mrtfb myocardin related transcription factor B involved_in ISO
IEA 		(PMID:14565952)
GO_REF:0000107 		RGD
Ensembl		 PMID:14565952 GO_REF:0000107 NCBI chr10:1,623,887...1,789,658
Ensembl chr10:1,623,940...1,789,658 		JBrowse link
positive regulation of ureter smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12399320) 		UniProt
Ensembl
RGD		 PMID:12399320 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
regulation of cardiac muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jph2 junctophilin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:10949023) 		Ensembl
RGD		 PMID:10949023 GO_REF:0000107 NCBI chr 3:172,414,246...172,478,678
Ensembl chr 3:172,414,256...172,478,348 		JBrowse link
regulation of skeletal muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEP PMID:12968668 UniProt PMID:12968668 RGD:8554636 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:63,387,381...63,477,884 		JBrowse link
G Megf10 multiple EGF-like domains 10 involved_in ISO
IEA 		(PMID:22101682)
GO_REF:0000107 		RGD
Ensembl		 PMID:22101682 GO_REF:0000107 NCBI chr18:52,803,292...52,953,431
Ensembl chr18:52,847,781...52,950,675 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:4881345 (PMID:21177349) RGD PMID:21177349 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:264,791,335...264,984,225 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3582610 (PMID:15673614) 		Ensembl
RGD		 PMID:15673614 GO_REF:0000107 NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:131,801,046...131,806,850 		JBrowse link
regulation of striated muscle tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpf centromere protein F acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:10373470) 		Ensembl
RGD		 PMID:10373470 GO_REF:0000107 NCBI chr13:103,715,344...103,760,931
Ensembl chr13:103,715,344...103,760,886 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3610732 (PMID:25715398) 		Ensembl
RGD		 PMID:25715398 GO_REF:0000107 NCBI chr18:48,162,889...48,175,640
Ensembl chr18:48,165,688...48,239,810 		JBrowse link
G Rpl3l ribosomal protein L3-like involved_in IEA
ISO 		GO_REF:0000107
(PMID:34081545) 		Ensembl
RGD		 PMID:34081545 GO_REF:0000107 NCBI chr10:14,258,446...14,268,989
Ensembl chr10:14,258,418...14,268,988 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:11711431) 		Ensembl
RGD		 PMID:11711431 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:73,024,760...73,132,324 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:11711431) 		Ensembl
RGD		 PMID:11711431 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      regulation of developmental process 2811
        regulation of muscle organ development 56
          negative regulation of muscle organ development + 18
          positive regulation of muscle organ development + 26
          regulation of somitomeric trunk muscle development + 0
          regulation of striated muscle tissue development + 50
          regulation of ureter smooth muscle cell differentiation + 1
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        animal organ development 3761
          muscle organ development 387
            regulation of muscle organ development 56
              negative regulation of muscle organ development + 18
              positive regulation of muscle organ development + 26
              regulation of somitomeric trunk muscle development + 0
              regulation of striated muscle tissue development + 50
              regulation of ureter smooth muscle cell differentiation + 1
paths to the root