ONTOLOGY REPORT - ANNOTATIONS
Term: digestive tract development
Accession: GO:0048565
browse the term
Definition: The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms: narrow_synonym: intestinal development; intestine development
broad_synonym: gut development
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Alx4
ALX homeobox 4
acts_upstream_of_or_within
ISO
MGI:1857484 (PMID:9268572)
RGD
PMID:9268572
NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260
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Cckbr
cholecystokinin B receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384535 (PMID:15476751)
Ensembl RGD
PMID:15476751
GO_REF:0000107
NCBI chr 1:169,183,578...169,193,583
Ensembl chr 1:159,771,733...159,814,881
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Ccnb1
cyclin B1
IEP
perinatal small intestine
RGD
PMID:17692466
RGD:2316322
NCBI chr 2:33,646,252...33,655,225
Ensembl chr 2:31,912,193...31,921,172
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Cd36
CD36 molecule
IEP
RGD
PMID:11595646
RGD:628450
NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903
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Cdx2
caudal type homeo box 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142
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Cdx4
caudal type homeo box 4
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:72,392,653...72,401,239
Ensembl chr X:68,326,874...68,335,461
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Chd8
chromodomain helicase DNA binding protein 8
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:24998929) GO_REF:0000033 MGI:3530648 (PMID:27602517) GO_REF:0000107
RGD GO_Central Ensembl
PMID:24998929 PMID:27602517
GO_REF:0000033 GO_REF:0000107
NCBI chr15:27,379,285...27,438,959
Ensembl chr15:24,905,789...24,951,285
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Ckmt1
creatine kinase, mitochondrial 1
IEP
RGD
PMID:8086475
RGD:11565082
NCBI chr 3:128,783,408...128,789,485
Ensembl chr 3:108,330,705...108,335,758
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Cldn18
claudin 18
acts_upstream_of_or_within
ISO
MGI:5007067 (PMID:22437732)
RGD
PMID:22437732
NCBI chr 8:109,125,819...109,145,110
Ensembl chr 8:100,247,633...100,273,351
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Clmp
CXADR-like membrane protein
involved_in
ISO IEA
(PMID:22155368) GO_REF:0000107
RGD Ensembl
PMID:22155368
GO_REF:0000107
NCBI chr 8:49,957,639...50,065,959
Ensembl chr 8:41,060,799...41,168,838
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Cobl
cordon-bleu WH2 repeat protein
involved_in
IEA ISO
GO_REF:0000107 (PMID:7586755)
Ensembl RGD
PMID:7586755
GO_REF:0000107
NCBI chr14:91,041,721...91,274,272
Ensembl chr14:86,828,139...87,060,800
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Col3a1
collagen type III alpha 1 chain
involved_in acts_upstream_of_or_within
ISO
MGI:1857431 (PMID:20587693) MGI:1857431 (PMID:9050868)
RGD
PMID:9050868 PMID:20587693
NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:47,374,593...47,410,547
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Cyp1a1
cytochrome P450, family 1, subfamily a, polypeptide 1
IEP
RGD
PMID:12162855
RGD:727721
NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:58,096,077...58,102,125
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Dchs1
dachsous cadherin-related 1
acts_upstream_of_or_within
ISO
MGI:4867020 (PMID:21303848)
RGD
PMID:21303848
NCBI chr 1:169,516,758...169,550,789
Ensembl chr 1:160,104,931...160,124,808
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965
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Ep300
E1A binding protein p300
IEP
RGD
PMID:17916272
RGD:2312267
NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Fat4
FAT atypical cadherin 4
acts_upstream_of_or_within
ISO
MGI:3846573 (PMID:21303848)
RGD
PMID:21303848
NCBI chr 2:123,855,289...123,984,716
Ensembl chr 2:121,927,942...122,056,707
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Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647 (PMID:15234214)
RGD
PMID:15234214
NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
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Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2153811 (PMID:15234214)
RGD
PMID:15234214
NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626
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Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
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Hrh2
histamine receptor H 2
acts_upstream_of_or_within
ISO
MGI:2182949|MGI:3607154 (PMID:10862789), (PMID:15476751)
RGD
PMID:10862789 PMID:15476751
NCBI chr17:10,371,083...10,412,979
Ensembl chr17:10,368,298...10,407,631
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Kit
KIT proto-oncogene receptor tyrosine kinase
involved_in
ISO
(PMID:15067126)
RGD
PMID:15067126
NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
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Lgr4
leucine-rich repeat-containing G protein-coupled receptor 4
acts_upstream_of_or_within
ISO
(PMID:24680895)
RGD
PMID:24680895
NCBI chr 3:116,901,968...117,004,584
Ensembl chr 3:96,447,858...96,548,899
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Mixl1
Mix paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:2387828 (PMID:12117810)
RGD
PMID:12117810
NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065
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Muc19
mucin 19, oligomeric
acts_upstream_of_or_within
ISO
(PMID:37475871)
RGD
PMID:37475871
NCBI chr 7:124,897,424...125,018,582
Ensembl chr 7:123,017,896...123,139,053
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Muc4
mucin 4, cell surface associated
IEP
RGD
PMID:15389518
RGD:2303738
NCBI chr11:81,513,321...81,575,200
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Myocd
myocardin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3052940 (PMID:21357509)
Ensembl RGD
PMID:21357509
GO_REF:0000107
NCBI chr10:50,332,356...50,426,819
Ensembl chr10:49,836,641...49,927,627
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Nat2
N-acetyltransferase 2
IEP
RGD
PMID:18799802
RGD:2303764
NCBI chr16:26,974,874...27,005,191
Ensembl chr16:22,208,194...22,238,520
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Nipbl
NIPBL, cohesin loading factor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899
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Nkx2-2
NK2 homeobox 2
acts_upstream_of_or_within
ISO
MGI:1932100 (PMID:18987169)
RGD
PMID:18987169
NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:134,620,039...134,622,411
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Nkx2-3
NK2 homeobox 3
acts_upstream_of_or_within
ISO
MGI:2386680|MGI:2448069 (PMID:10207146), (PMID:10926756)
RGD
PMID:10207146 PMID:10926756
NCBI chr 1:252,427,356...252,430,309
Ensembl chr 1:242,478,130...242,481,083
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Nkx2-6
NK2 homeobox 6
involved_in
ISO
(PMID:9545560)
RGD
PMID:9545560
NCBI chr15:50,852,965...50,857,060
Ensembl chr15:44,443,101...44,447,247
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Npr2
natriuretic peptide receptor 2
involved_in
ISO
MGI:3774275 (PMID:32901096)
RGD
PMID:32901096
NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580
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Nr1h3
nuclear receptor subfamily 1, group H, member 3
IEP
intestine
RGD
PMID:17341476
RGD:401827282
NCBI chr 3:97,614,616...97,632,053
Ensembl chr 3:77,158,808...77,168,722
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Nr1h4
nuclear receptor subfamily 1, group H, member 4
IEP
RGD
PMID:11984532
RGD:1625207
NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047
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Nts
neurotensin
IEP
RGD
PMID:8571204
RGD:9743850
NCBI chr 7:39,451,484...39,460,888
Ensembl chr 7:37,564,533...37,574,423
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Oxtr
oxytocin receptor
IEP
RGD
PMID:19003903
RGD:2303961
NCBI chr 4:147,154,374...147,171,723
Ensembl chr 4:145,599,561...145,614,674
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Pdgfa
platelet derived growth factor subunit A
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1859631 (PMID:23938297) GO_REF:0000107 (PMID:10903171)
RGD Ensembl
PMID:10903171 PMID:23938297
GO_REF:0000107
NCBI chr12:20,759,366...20,780,337
Ensembl chr12:15,645,541...15,666,497
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Pdgfc
platelet derived growth factor C
acts_upstream_of_or_within
ISO
MGI:97527 (PMID:23938297)
RGD
PMID:23938297
NCBI chr 2:168,613,409...168,791,575
Ensembl chr 2:166,316,803...166,493,433
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Pdx1
pancreatic and duodenal homeobox 1
acts_upstream_of_or_within
ISO
MGI:2388676 (PMID:19619492)
RGD
PMID:19619492
NCBI chr12:12,793,957...12,799,156
Ensembl chr12:7,757,865...7,763,064
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Pkd1
polycystin 1, transient receptor potential channel interacting
involved_in
ISO
(PMID:11891195)
RGD
PMID:11891195
NCBI chr10:14,077,733...14,125,682
Ensembl chr10:13,573,021...13,621,128
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Rb1
RB transcriptional corepressor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1931018|MGI:3574761 (PMID:17257418)
Ensembl RGD
PMID:17257418
GO_REF:0000107
NCBI chr15:54,780,858...54,911,989
Ensembl chr15:48,371,296...48,502,302
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Rcbtb2
RCC1 and BTB domain containing protein 2
acts_upstream_of_or_within
ISO
(PMID:26291700)
RGD
PMID:26291700
NCBI chr15:54,729,367...54,774,004
Ensembl chr15:48,323,866...48,383,750
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Slc4a2
solute carrier family 4 member 2
IEP
RGD
PMID:8770049
RGD:9999233
NCBI chr 4:11,628,860...11,646,961
Ensembl chr 4:10,736,425...10,752,965
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Smo
smoothened, frizzled class receptor
acts_upstream_of_or_within
ISO
MGI:2176255 (PMID:19619492)
RGD
PMID:19619492
NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829
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Tgfb1
transforming growth factor, beta 1
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
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Tgfb2
transforming growth factor, beta 2
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405
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Tgfb3
transforming growth factor, beta 3
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:105,704,236...105,726,564
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Tgfbr1
transforming growth factor, beta receptor 1
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777
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Tgfbr2
transforming growth factor, beta receptor 2
IEP
RGD
PMID:12815632
RGD:2302031
NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228
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Thra
thyroid hormone receptor alpha
IEP
RGD
PMID:17496154
RGD:2314319
NCBI chr10:84,198,141...84,225,659
Ensembl chr10:83,700,755...83,729,936
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Thra_v1
thyroid hormone receptor alpha, variant 1
IEP
RGD
PMID:17496154
RGD:2314319
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Thra_v2
thyroid hormone receptor alpha, variant 2
IEP
RGD
PMID:17496154
RGD:2314319
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Tk1
thymidine kinase 1
IEP
RGD
PMID:6701043
RGD:2317231
NCBI chr10:103,533,449...103,544,818
Ensembl chr10:103,031,521...103,046,920
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Chrd
chordin
involved_in
ISO
MGI:2157350 (PMID:12810603)
RGD
PMID:12810603
NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673
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Crkl
CRK like proto-oncogene, adaptor protein
acts_upstream_of_or_within
ISO
MGI:5510713 (PMID:25565927)
RGD
PMID:25565927
NCBI chr11:97,033,033...97,067,457
Ensembl chr11:83,526,530...83,563,238
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Ednrb
endothelin receptor type B
involved_in
ISO
(PMID:18199583)
RGD
PMID:18199583
NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
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Foxe1
forkhead box E1
involved_in
ISO
(PMID:15494458)
RGD
PMID:15494458
NCBI chr 5:65,425,630...65,428,438
Ensembl chr 5:60,630,027...60,632,835
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Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041
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Tp63
tumor protein p63
acts_upstream_of_or_within
ISO
MGI:1934269 (PMID:12368184)
RGD
PMID:12368184
NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398
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Wnt11
Wnt family member 11
involved_in
ISO
(PMID:9757009)
RGD
PMID:9757009
NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294
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Ccdc39
coiled-coil domain 39 molecular ruler complex subunit
involved_in
ISO
(PMID:22693285)
RGD
PMID:22693285
NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350
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Ccdc40
coiled-coil domain 40 molecular ruler complex subunit
involved_in
ISO
(PMID:22693285)
RGD
PMID:22693285
NCBI chr10:104,985,283...105,025,813
Ensembl chr10:104,486,748...104,527,243
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Dnaaf1
dynein, axonemal, assembly factor 1
involved_in
ISO IEA
(PMID:19944405) GO_REF:0000107
RGD Ensembl
PMID:19944405
GO_REF:0000107
NCBI chr19:64,532,859...64,560,942
Ensembl chr19:47,624,181...47,652,313
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Dnaaf19
dynein axonemal assembly factor 19
involved_in
ISO
(PMID:22581229)
RGD
PMID:22581229
NCBI chr10:88,346,453...88,349,853
Ensembl chr10:87,846,357...87,849,757
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Megf8
multiple EGF-like-domains 8
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:3722325 (PMID:18043505) GO_REF:0000024
Ensembl RGD UniProt
PMID:18043505
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613
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Zic3
Zic family member 3
involved_in
ISO
(PMID:9354794)
RGD
PMID:9354794
NCBI chr X:141,159,623...141,165,587
Ensembl chr X:136,124,026...136,134,746
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Nphp3
nephrocystin 3
involved_in
ISO
(PMID:20007846)
RGD
PMID:20007846
NCBI chr 8:113,500,708...113,541,179
Ensembl chr 8:104,621,864...104,662,383
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Nphp3
nephrocystin 3
involved_in
ISO
(PMID:18371931)
RGD
PMID:18371931
NCBI chr 8:113,500,708...113,541,179
Ensembl chr 8:104,621,864...104,662,383
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Shh
sonic hedgehog signaling molecule
IDA
RGD
PMID:9368764
RGD:2306312
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Agr2
anterior gradient 2, protein disulphide isomerase family member
involved_in
ISO
(PMID:25666625)
RGD
PMID:25666625
NCBI chr 6:58,435,908...58,456,678
Ensembl chr 6:52,708,602...52,729,371
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158305 (PMID:7812968)
Ensembl RGD
PMID:7812968
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Cfc1
cripto, FRL-1, cryptic family 1
acts_upstream_of_or_within
ISO
MGI:2179530 (PMID:10521397)
RGD
PMID:10521397
NCBI chr 9:44,234,997...44,247,846
Ensembl chr 9:36,739,071...36,751,930
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Egfr
epidermal growth factor receptor
acts_upstream_of_or_within
ISO
MGI:1856402 (PMID:7618084)
RGD
PMID:7618084
NCBI chr14:95,378,626...95,551,358
Ensembl chr14:91,177,067...91,344,382
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Ephb3
Eph receptor B3
involved_in
ISO
(PMID:12408869)
RGD
PMID:12408869
NCBI chr11:93,345,098...93,363,775
Ensembl chr11:79,840,668...79,859,370
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Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
MGI:1931521 (PMID:19407216)
RGD
PMID:19407216
NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341
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Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384429 (PMID:20808783)
Ensembl RGD
PMID:20808783
GO_REF:0000107
NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261
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Il18
interleukin 18
IEP
RGD
PMID:21088234
RGD:4889157
NCBI chr 8:59,802,072...59,829,275
Ensembl chr 8:50,906,960...50,932,887
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Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:2158732 (PMID:11311163)
RGD
PMID:11311163
NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837
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Npr2
natriuretic peptide receptor 2
involved_in
IEA ISO
GO_REF:0000107 MGI:3774275 (PMID:20616347)
Ensembl RGD
PMID:20616347
GO_REF:0000107
NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580
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Percc1
proline and glutamate rich with coiled coil 1
involved_in
ISO
(PMID:31217582)
RGD
PMID:31217582
NCBI chr10:14,692,360...14,695,138
Ensembl chr10:14,188,216...14,189,040 Ensembl chr10:14,188,216...14,189,040
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Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:108078|MGI:1860298|MGI:2135272 (PMID:19300477)
Ensembl RGD
PMID:19300477
GO_REF:0000107
NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286
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Sfrp2
secreted frizzled-related protein 2
acts_upstream_of_or_within
ISO
MGI:1860298|MGI:2135272|MGI:892014 (PMID:19300477)
RGD
PMID:19300477
NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063
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Sfrp5
secreted frizzled-related protein 5
involved_in acts_upstream_of_or_within
ISO
(PMID:18981481) MGI:108078|MGI:2135272|MGI:892014 (PMID:19300477)
RGD
PMID:18981481 PMID:19300477
NCBI chr 1:250,956,050...250,960,512
Ensembl chr 1:241,006,762...241,011,224
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Shh
sonic hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1857796 (PMID:9731532)
RGD
PMID:9731532
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
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Sox10
SRY-box transcription factor 10
acts_upstream_of_or_within
ISO
MGI:1857401 (PMID:15843399), (PMID:6512238)
RGD
PMID:6512238 PMID:15843399
NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860
G
Stx2
syntaxin 2
IMP
RGD
PMID:12464668
RGD:1298909
NCBI chr12:33,315,447...33,350,788
Ensembl chr12:27,689,819...27,714,751
G
Tp73
tumor protein p73
acts_upstream_of_or_within
ISO
MGI:1859911 (PMID:10716451)
RGD
PMID:10716451
NCBI chr 5:169,903,801...169,988,075
Ensembl chr 5:164,621,377...164,681,128
G
Vangl2
VANGL planar cell polarity protein 2
acts_upstream_of_or_within
ISO
MGI:108078|MGI:1860298|MGI:892014 (PMID:19300477)
RGD
PMID:19300477
NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378
G
Wnt5a
Wnt family member 5A
acts_upstream_of_or_within
ISO
MGI:1857617 (PMID:19300477)
RGD
PMID:19300477
NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
G
Ada
adenosine deaminase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2155977 (PMID:7670465)
Ensembl RGD
PMID:7670465
GO_REF:0000107
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1857891 (PMID:16806149)
RGD
PMID:16806149
NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1927833 (PMID:16308329)
RGD
PMID:16308329
NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
G
Fgf9
fibroblast growth factor 9
acts_upstream_of_or_within
ISO
MGI:2135961 (PMID:16308329)
RGD
PMID:16308329
NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1347479 (PMID:16439479)
RGD
PMID:16439479
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
G
Foxf2
forkhead box F2
acts_upstream_of_or_within
ISO
MGI:1347470 (PMID:16439479)
RGD
PMID:16439479
NCBI chr17:33,044,446...33,051,259
Ensembl chr17:32,836,777...32,842,176
G
Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857509 (PMID:10693670)
RGD
PMID:10693670
NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276 (PMID:10693670)
RGD
PMID:10693670
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
G
Myb
MYB proto-oncogene, transcription factor
acts_upstream_of_or_within
ISO
MGI:2662859 (PMID:10523863)
RGD
PMID:10523863
NCBI chr 1:17,759,309...17,793,306
Ensembl chr 1:15,939,761...15,973,057
G
Pcsk5
proprotein convertase subtilisin/kexin type 5
involved_in
ISO IEA
(PMID:18519639) GO_REF:0000107
RGD Ensembl
PMID:18519639
GO_REF:0000107
NCBI chr 1:224,263,823...224,694,350
Ensembl chr 1:214,837,927...215,267,600
G
Pkdcc
protein kinase domain containing, cytoplasmic
involved_in
ISO
(PMID:19097194)
RGD
PMID:19097194
NCBI chr 6:17,208,171...17,217,488
Ensembl chr 6:11,455,686...11,465,556
G
Rarb
retinoic acid receptor, beta
involved_in
ISO
(PMID:19443732)
RGD
PMID:19443732
NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288
G
Rarres2
retinoic acid receptor responder 2
involved_in
ISO
(PMID:19443732)
RGD
PMID:19443732
NCBI chr 4:78,853,450...78,856,652
Ensembl chr 4:77,522,535...77,525,556
G
Sall1
spalt-like transcription factor 1
involved_in
ISO
(PMID:18280297)
RGD
PMID:18280297
NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705
G
Sct
secretin
IEP
RGD
PMID:1711228
RGD:729899
NCBI chr 1:205,812,435...205,813,246
Ensembl chr 1:196,382,856...196,383,658
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO ISS
(PMID:20875417) GO_REF:0000024
RGD AgBase
PMID:20875417
GO_REF:0000024
NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405
G
Tnf
tumor necrosis factor
involved_in
ISO
(PMID:20875417)
RGD
PMID:20875417
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647|MGI:1927833 (PMID:15017552), (PMID:16618415)
RGD
PMID:15017552 PMID:16618415
NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2153811|MGI:2183527 (PMID:16618415), (PMID:21492869), (PMID:21550054)
RGD
PMID:16618415 PMID:21492869 PMID:21550054
NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626
G
Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
G
Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
MGI:2386764 (PMID:16127717)
RGD
PMID:16127717
NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276 (PMID:16247775)
RGD
PMID:16247775
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
G
Hlx
H2.0-like homeobox
acts_upstream_of_or_within
ISO
MGI:2182089 (PMID:8557196)
RGD
PMID:8557196
NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750
G
Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857856 (PMID:18635606)
Ensembl RGD
PMID:18635606
GO_REF:0000107
NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888
G
Id2
inhibitor of DNA binding 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16888283)
UniProt RGD
PMID:16888283
GO_REF:0000024
NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:41,728,946...41,744,400
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:10821773)
RGD
PMID:10821773
NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
G
Nipbl
NIPBL, cohesin loading factor
involved_in
ISO
(PMID:19242925), (PMID:8291537)
RGD
PMID:8291537 PMID:19242925
NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899
G
Ovol2
ovo-like zinc finger 2
acts_upstream_of_or_within
ISO
MGI:3522498 (PMID:16423343)
RGD
PMID:16423343
NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:131,677,391...131,708,359
G
Pdgfra
platelet derived growth factor receptor alpha
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:10903171) GO_REF:0000107
UniProt RGD Ensembl
PMID:10903171
GO_REF:0000024 GO_REF:0000107
NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:3767234 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1934261 (PMID:10821773)
Ensembl RGD
PMID:10821773
GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Shox2
SHOX homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3605739 (PMID:16141225)
Ensembl RGD
PMID:16141225
GO_REF:0000107
NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143
G
Six2
SIX homeobox 2
involved_in
ISO
(PMID:19660448)
RGD
PMID:19660448
NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (PMID:15254231)
UniProt RGD
PMID:15254231
GO_REF:0000024
NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354
G
Tcf21
transcription factor 21
IMP
RGD
PMID:11804032
RGD:727206
NCBI chr 1:24,520,499...24,523,358
Ensembl chr 1:22,701,353...22,704,202
G
Tcf7
transcription factor 7
acts_upstream_of_or_within
ISO
MGI:1202879 (PMID:15057272)
RGD
PMID:15057272
NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535
G
Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:98507 (PMID:15057272)
RGD
PMID:15057272
NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967
G
Vps52
VPS52 subunit of GARP complex
acts_upstream_of_or_within
ISO
(PMID:23142660)
RGD
PMID:23142660
NCBI chr20:4,922,599...4,933,458
Ensembl chr20:4,860,843...4,931,665
G
Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
G
Acvr2b
activin A receptor type 2B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857709 (PMID:10921901)
Ensembl RGD
PMID:10921901
GO_REF:0000107
NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458
G
Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2148567 (PMID:18692041)
Ensembl RGD
PMID:18692041
GO_REF:0000107
NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
G
Epb41l5
erythrocyte membrane protein band 4.1 like 5
acts_upstream_of_or_within
ISO
MGI:3822451 (PMID:18794329)
RGD
PMID:18794329
NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360
G
Foxf1
forkhead box F1
acts_upstream_of_or_within
ISO
MGI:1929432 (PMID:11493558)
RGD
PMID:11493558
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
G
Foxp4
forkhead box P4
acts_upstream_of_or_within
ISO
MGI:3055161 (PMID:15361625)
RGD
PMID:15361625
NCBI chr 9:20,556,270...20,612,967
Ensembl chr 9:13,058,476...13,114,879
G
Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
MGI:2179443|MGI:2386265 (PMID:9136932), (PMID:9136933)
RGD
PMID:9136932 PMID:9136933
NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636
G
Nckap1
NCK-associated protein 1
acts_upstream_of_or_within
ISO
MGI:3578145 (PMID:16831833)
RGD
PMID:16831833
NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857796 (PMID:9731532)
Ensembl RGD
PMID:9731532
GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Smad2
SMAD family member 2
acts_upstream_of_or_within
ISO
MGI:1201674 (PMID:15183723)
RGD
PMID:15183723
NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323
G
Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:108051 (PMID:15183723)
RGD
PMID:15183723
NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960
G
Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within involved_in
ISO
MGI:2179440|MGI:3717118|MGI:4356113 (PMID:18462699), (PMID:19619492) (PMID:21305474)
RGD
PMID:18462699 PMID:19619492 PMID:21305474
NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228
G
Dact1
dishevelled-binding antagonist of beta-catenin 1
involved_in
ISO
(PMID:20145239)
RGD
PMID:20145239
NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:89,790,644...89,817,906
G
Hoxa13
homeo box A13
IMP
RGD
PMID:17161201
RGD:1599527
NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:81,358,956...81,361,091
G
Hoxd13
homeo box D13
IMP
RGD
PMID:17161201
RGD:1599527
NCBI chr 3:79,978,077...79,981,393
Ensembl chr 3:59,570,646...59,573,963
G
Tcf7
transcription factor 7
acts_upstream_of_or_within
ISO
MGI:1202879 (PMID:15057272)
RGD
PMID:15057272
NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535
G
Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:98507 (PMID:15057272)
RGD
PMID:15057272
NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:2183527 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626
G
Id2
inhibitor of DNA binding 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16888283)
UniProt RGD
PMID:16888283
GO_REF:0000024
NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:41,728,946...41,744,400
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:3767234 (PMID:21550054)
RGD
PMID:21550054
NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293
G
Sox17
SRY-box transcription factor 17
involved_in
ISO
(PMID:21305474)
RGD
PMID:21305474
NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228
G
Ednrb
endothelin receptor type B
involved_in
ISO
(PMID:10021336)
RGD
PMID:10021336
NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
G
Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:17980593)
Ensembl RGD
PMID:17980593
GO_REF:0000107
NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010
G
Notch1
notch receptor 1
acts_upstream_of_or_within
ISO
MGI:2684314|MGI:2684317 (PMID:16107537)
RGD
PMID:16107537
NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531
G
AABR07063281.1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
G
Filip1l
filamin A interacting protein 1-like
acts_upstream_of_or_within
ISO
(PMID:26655467)
RGD
PMID:26655467
NCBI chr11:56,403,467...56,646,422
Ensembl chr11:42,940,467...43,177,415
G
Ift172
intraflagellar transport 172
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4821824 (PMID:21653639)
Ensembl RGD
PMID:21653639
GO_REF:0000107
NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860
G
Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857509|MGI:95729 (PMID:11485934)
RGD
PMID:11485934
NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:95728 (PMID:11485934)
RGD
PMID:11485934
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857796 (PMID:11485934)
Ensembl RGD
PMID:11485934
GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857617 (PMID:18804104)
Ensembl RGD
PMID:18804104
GO_REF:0000107
NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
G
C1galt1
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3714051 (PMID:21383503)
Ensembl RGD
PMID:21383503
GO_REF:0000107
NCBI chr 4:36,894,440...36,932,434
Ensembl chr 4:35,928,104...35,961,831
G
Cdh1
cadherin 1
acts_upstream_of_or_within
ISO
(PMID:22766025)
RGD
PMID:22766025
NCBI chr19:51,402,178...51,471,572
Ensembl chr19:34,492,371...34,561,775
G
Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:108015 (PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965
G
Il6st
interleukin 6 cytokine family signal transducer
involved_in
ISO IEA
(PMID:25731159) GO_REF:0000107
RGD Ensembl
PMID:25731159
GO_REF:0000107
NCBI chr 2:45,798,872...45,839,501
Ensembl chr 2:44,066,130...44,109,936
G
Klf5
KLF transcription factor 5
acts_upstream_of_or_within
ISO
MGI:3806635 (PMID:23266329)
RGD
PMID:23266329
NCBI chr15:82,472,081...82,487,267
Ensembl chr15:76,064,258...76,079,445
G
Mir203-2
microRNA 203-2
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr 6:137,020,691...137,020,805
Ensembl chr 6:131,199,542...131,199,656
G
Mir7-1
microRNA 7-1
acts_upstream_of_or_within
ISO
(PMID:21307095)
RGD
PMID:21307095
NCBI chr17:6,278,692...6,278,788
Ensembl chr17:6,273,264...6,273,360
G
Nkx3-2
NK3 homeobox 2
acts_upstream_of_or_within
ISO
MGI:2177178 (PMID:21307095)
RGD
PMID:21307095
NCBI chr14:73,396,198...73,398,585
Ensembl chr14:69,183,820...69,186,061
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Prdm1
PR/SET domain 1
acts_upstream_of_or_within
ISO
MGI:3605483|MGI:3605621 (PMID:21670299)
RGD
PMID:21670299
NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488
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Spdef
SAM pointed domain containing ets transcription factor
acts_upstream_of_or_within
ISO
MGI:4410321 (PMID:19549527)
RGD
PMID:19549527
NCBI chr20:5,773,236...5,787,685
Ensembl chr20:5,771,441...5,785,893
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Src
SRC proto-oncogene, non-receptor tyrosine kinase
involved_in
ISO
(PMID:25731159)
RGD
PMID:25731159
NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:146,091,841...146,139,476
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Tigar
TP53 induced glycolysis regulatory phosphatase
acts_upstream_of_or_within
ISO
MGI:4391656 (PMID:23726973)
RGD
PMID:23726973
NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:159,927,139...159,946,029 Ensembl chr 6:159,927,139...159,946,029
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Yap1
Yes1 associated transcriptional regulator
involved_in
IEA ISO
GO_REF:0000107 (PMID:25731159)
Ensembl RGD
PMID:25731159
GO_REF:0000107
NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010
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Yipf6
Yip1 domain family, member 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4839074 (PMID:22802641)
Ensembl RGD
PMID:22802641
GO_REF:0000107
NCBI chr X:68,079,754...68,091,845
Ensembl chr X:64,040,952...64,054,702
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Cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2
involved_in
ISO
(PMID:25398765)
RGD
PMID:25398765
NCBI chr 3:163,397,160...163,503,409
Ensembl chr 3:142,936,985...143,043,197
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Cdx2
caudal type homeo box 2
involved_in
ISO
(PMID:22015720)
RGD
PMID:22015720
NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142
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Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
(PMID:9566909)
RGD
PMID:9566909
NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636
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Gata5
GATA binding protein 5
acts_upstream_of_or_within
ISO
(PMID:9566909)
RGD
PMID:9566909
NCBI chr 3:187,796,140...187,804,327
Ensembl chr 3:167,418,565...167,426,751
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Gata6
GATA binding protein 6
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:9566909) GO_REF:0000107
RGD Ensembl
PMID:9566909
GO_REF:0000107
NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532
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Ptk6
protein tyrosine kinase 6
involved_in
ISO
(PMID:16782882)
RGD
PMID:16782882
NCBI chr 3:188,684,633...188,693,224
Ensembl chr 3:168,307,073...168,315,664
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Sav1
salvador family WW domain containing protein 1
acts_upstream_of_or_within
ISO
MGI:3790763 (PMID:18369314)
RGD
PMID:18369314
NCBI chr 6:94,214,514...94,236,354
Ensembl chr 6:88,478,539...88,499,968
G
Sox9
SRY-box transcription factor 9
acts_upstream_of
ISO
MGI:2429649 (PMID:17681175)
RGD
PMID:17681175
NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994
G
Yap1
Yes1 associated transcriptional regulator
acts_upstream_of
ISO
(PMID:17980593)
RGD
PMID:17980593
NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010
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Cdkn1a
cyclin-dependent kinase inhibitor 1A
IEP
RGD
PMID:20466941
RGD:8662316
NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585
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Fzd5
frizzled class receptor 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15778706)
Ensembl RGD
PMID:15778706
GO_REF:0000107
NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
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Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2384429 (PMID:20808783)
Ensembl RGD
PMID:20808783
GO_REF:0000107
NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261
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Hoxa5
homeo box A5
acts_upstream_of_or_within
ISO
MGI:2150397 (PMID:10564089)
RGD
PMID:10564089
NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234
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Si
sucrase-isomaltase
IEP
RGD
PMID:18313392
RGD:597538476
NCBI chr 2:159,804,568...159,884,902
Ensembl chr 2:157,506,342...157,585,260
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Tmigd1
transmembrane and immunoglobulin domain containing 1
acts_upstream_of_or_within
ISO
MGI:6506201 (PMID:33129760)
RGD
PMID:33129760
NCBI chr10:62,234,764...62,249,169
Ensembl chr10:61,736,462...61,751,025
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Tyms
thymidylate synthetase
IEP
RGD
PMID:1260861
RGD:2317427
NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107
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Arg2
arginase 2
IEP
RGD
PMID:10050048
RGD:4144052
NCBI chr 6:103,669,001...103,694,375
Ensembl chr 6:97,936,002...97,961,378
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Asl
argininosuccinate lyase
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr12:32,295,779...32,313,257
Ensembl chr12:26,659,565...26,679,662
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Ass1
argininosuccinate synthase 1
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr 3:35,144,765...35,194,632
Ensembl chr 3:14,747,368...14,796,903
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Casp1
caspase 1
IEP
RGD
PMID:12396474
RGD:5130192
NCBI chr 8:10,746,338...10,882,295
Ensembl chr 8:2,587,831...2,597,383
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Cps1
carbamoyl-phosphate synthase 1
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:68,614,153...68,737,033
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Ctnnb1
catenin beta 1
IEP
RGD
PMID:17356920
RGD:2289844
NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
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Dab1
DAB adaptor protein 1
IEP
RGD
PMID:19946030
RGD:2317766
NCBI chr 5:123,621,510...124,742,585
Ensembl chr 5:119,140,533...119,510,552
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Egfr
epidermal growth factor receptor
IEP
RGD
PMID:7926492
RGD:10395256
NCBI chr14:95,378,626...95,551,358
Ensembl chr14:91,177,067...91,344,382
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Foxf1
forkhead box F1
involved_in
ISO
(PMID:19500772)
RGD
PMID:19500772
NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738
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Hmgcs2
3-hydroxy-3-methylglutaryl-CoA synthase 2
IEP
RGD
PMID:8620869
RGD:2326125
NCBI chr 2:188,564,348...188,590,872
Ensembl chr 2:185,875,616...185,902,130
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Otc
ornithine transcarbamylase
IEP
RGD
PMID:9544996
RGD:4139911
NCBI chr X:15,126,358...15,202,473
Ensembl chr X:12,453,834...12,566,918
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Reg1a
regenerating family member 1 alpha
IEP
RGD
PMID:7720628
RGD:9850133
NCBI chr 4:112,450,466...112,453,130
Ensembl chr 4:110,892,453...110,895,570
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Reg3b
regenerating family member 3 beta
IEP
RGD
PMID:7720628
RGD:9850133
NCBI chr 4:112,419,776...112,423,014
Ensembl chr 4:110,861,775...110,865,015
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Reln
reelin
IEP
RGD
PMID:19946030
RGD:2317766
NCBI chr 4:13,628,440...14,055,201
Ensembl chr 4:12,736,130...13,162,211
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Rxra
retinoid X receptor alpha
IEP
RGD
PMID:15964596
RGD:1643113
NCBI chr 3:31,387,892...31,474,415
Ensembl chr 3:10,989,832...11,073,712
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Smo
smoothened, frizzled class receptor
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:11517919) GO_REF:0000024
Ensembl RGD UniProt
PMID:11517919
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829
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Wnt5a
Wnt family member 5A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857617 (PMID:19100728)
Ensembl RGD
PMID:19100728
GO_REF:0000107
NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
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Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:18173746)
Ensembl RGD
PMID:18173746
GO_REF:0000107
NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192
G
Tlr9
toll-like receptor 9
involved_in
ISO
(PMID:17128265)
RGD
PMID:17128265
NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
G
Nkx2-3
NK2 homeobox 3
acts_upstream_of_or_within
ISO
MGI:2448069 (PMID:10926756)
RGD
PMID:10926756
NCBI chr 1:252,427,356...252,430,309
Ensembl chr 1:242,478,130...242,481,083
G
Ednrb
endothelin receptor type B
acts_upstream_of_or_within
ISO
MGI:1856149 (PMID:8582288)
RGD
PMID:8582288
NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115
G
Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:29700203)
RGD
PMID:29700203
NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357
G
Kcnq1
potassium voltage-gated channel subfamily Q member 1
involved_in
IEA ISO
GO_REF:0000107 MGI:2389447 (PMID:15385447)
Ensembl RGD
PMID:15385447
GO_REF:0000107
NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669
G
Ascl1
achaete-scute family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857470 (PMID:18173746)
RGD
PMID:18173746
NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:18173746)
Ensembl RGD
PMID:18173746
GO_REF:0000107
NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192
G
Foxl1
forkhead box L1
acts_upstream_of_or_within
ISO
MGI:2178230 (PMID:9203584)
RGD
PMID:9203584
NCBI chr19:66,105,953...66,109,366
Ensembl chr19:49,197,400...49,198,425
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