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ONTOLOGY REPORT - ANNOTATIONS


Term:hematopoietic or lymphoid organ development
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Accession:GO:0048534 term browser browse the term
Definition:The process whose specific outcome is the progression of any organ involved in hematopoiesis (also known as hemopoiesis) or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation.
Synonyms:exact_synonym: haematopoietic or lymphoid organ development;   haemopoietic or lymphoid organ development;   hemopoietic or lymphoid organ development



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hematopoietic or lymphoid organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (PMID:19861679) RGD PMID:19861679 NCBI chr 3:162,273,828...162,341,742 JBrowse link
G Ltbr lymphotoxin beta receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:158,108,884...158,115,339 JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (PMID:19861679) RGD PMID:19861679 NCBI chr 3:162,273,828...162,341,742 JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (PMID:22531781) RGD PMID:22531781 NCBI chr10:54,212,537...54,234,146 JBrowse link
G Fancb FA complementation group B acts_upstream_of_or_within ISO (PMID:26658157) RGD PMID:26658157 NCBI chr  X:33,035,387...33,051,993 JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (PMID:14962901) RGD PMID:14962901 NCBI chr10:81,284,552...81,287,134 JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2451080 (PMID:20348241)
Ensembl
RGD
PMID:20348241 GO_REF:0000107 NCBI chr 1:241,437,524...241,470,936 JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:17680723) RGD PMID:17680723 NCBI chr 1:200,814,247...200,917,581 JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in ISO (PMID:19336404) RGD PMID:19336404 NCBI chr 4:13,501,428...13,531,845 JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (PMID:25751060) RGD PMID:25751060 NCBI chr  X:15,247,715...15,247,794 JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:52,147,717...52,259,810 JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:15342903) RGD PMID:15342903 NCBI chr12:26,420,410...26,429,650 JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:30146126)
GO_REF:0000107
RGD
Ensembl
PMID:30146126 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300 JBrowse link
lymph node development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl21 C-C motif chemokine ligand 21 acts_upstream_of_or_within ISO MGI:1857881 (PMID:12732660) RGD PMID:12732660 NCBI chr 5:56,980,557...56,981,661 JBrowse link
G Cd248 CD248 molecule acts_upstream_of_or_within ISO MGI:3625491 (PMID:20432232) RGD PMID:20432232 NCBI chr 1:202,373,676...202,376,240 JBrowse link
G Cd2ap CD2-associated protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2664945 (PMID:24218450)
Ensembl
RGD
PMID:24218450 GO_REF:0000107 NCBI chr 9:18,086,744...18,182,744 JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 acts_upstream_of_or_within
involved_in
ISO MGI:2384500 (PMID:12732660)
(PMID:19783990)
RGD PMID:12732660 PMID:19783990 NCBI chr14:13,608,894...13,613,965 JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158677 (PMID:12732660)
Ensembl
RGD
PMID:12732660 GO_REF:0000107 NCBI chr 8:53,738,878...53,756,813 JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr 1:209,169,245...209,175,423 JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823 (PMID:20457904) RGD PMID:20457904 NCBI chr12:12,660,035...12,735,584 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839 JBrowse link
G Il15 interleukin 15 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2136897 (PMID:10704459)
Ensembl
RGD
PMID:10704459 GO_REF:0000107 NCBI chr19:42,536,160...42,611,349 JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within ISO MGI:1857198 (PMID:12732660) RGD PMID:12732660 NCBI chr 2:58,452,393...58,477,757 JBrowse link
G Lta lymphotoxin alpha acts_upstream_of_or_within ISO MGI:1857215|MGI:1860953|MGI:1860954|MGI:1860957 (PMID:10415063), (PMID:7636227), (PMID:8171322), (PMID:9368616), (PMID:9565643) RGD PMID:7636227 PMID:8171322 PMID:9368616 PMID:9565643 PMID:10415063 NCBI chr20:3,622,291...3,625,852 JBrowse link
G Ltb lymphotoxin beta acts_upstream_of_or_within ISO MGI:1860955|MGI:1860970 (PMID:9133428), (PMID:9256477) RGD PMID:9133428 PMID:9256477 NCBI chr20:3,632,209...3,634,054 JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680|MGI:2448069 (PMID:10790368), (PMID:10926756) RGD PMID:10790368 PMID:10926756 NCBI chr 1:242,478,130...242,481,083 JBrowse link
G Pdpn podoplanin involved_in ISS
ISO
GO_REF:0000024
(PMID:25347465)
UniProt
RGD
PMID:25347465 GO_REF:0000024 NCBI chr 5:155,601,691...155,635,656 JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO MGI:5427084 (PMID:24388753) RGD PMID:24388753 NCBI chr16:69,379,438...69,402,710 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:2442789 (PMID:23583643) RGD PMID:23583643 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (PMID:23583643) RGD PMID:23583643 NCBI chr 3:21,121,531...21,186,711 JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO (PMID:26291700) RGD PMID:26291700 NCBI chr15:48,319,809...48,364,441 JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr15:33,253,071...33,262,025 JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within
involved_in
ISO MGI:3026635 (PMID:14691482) RGD PMID:14691482 NCBI chr 2:184,698,779...184,723,942 JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO MGI:4460276 (PMID:23180825) RGD PMID:23180825 NCBI chr10:57,067,348...57,105,969 JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO MGI:1857258 (PMID:1436033) RGD PMID:1436033 NCBI chr 1:90,324,312...90,340,627 JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1860238 (PMID:10500098)
GO_Central
RGD
PMID:10500098 GO_REF:0000033 NCBI chr13:22,442,930...22,501,257 JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO MGI:3773716 (PMID:20818394) RGD PMID:20818394 NCBI chr 5:19,874,994...20,171,272 JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (PMID:22585710) RGD PMID:22585710 NCBI chr20:43,011,405...43,054,654 JBrowse link
mucosa-associated lymphoid tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2448069 (PMID:10926756) RGD PMID:10926756 NCBI chr 1:242,478,130...242,481,083 JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within ISO MGI:3026635 (PMID:15247480) RGD PMID:15247480 NCBI chr 2:184,698,779...184,723,942 JBrowse link
Peyer's patch development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857117|MGI:2683027 (PMID:10720488)
Ensembl
RGD
PMID:10720488 GO_REF:0000107 NCBI chr 3:152,398,745...152,422,854 JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (PMID:5037658) RGD PMID:5037658 NCBI chr 3:36,906,771...37,169,165 JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:98510 (PMID:17452521) RGD PMID:17452521 NCBI chr 6:47,469,162...47,470,995 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839 JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680 (PMID:10790368) RGD PMID:10790368 NCBI chr 1:242,478,130...242,481,083 JBrowse link
G Rorc RAR-related orphan receptor C involved_in ISO (PMID:14691482) RGD PMID:14691482 NCBI chr 2:184,698,779...184,723,942 JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within ISO MGI:103035 (PMID:15294943) RGD PMID:15294943 NCBI chr10:86,285,859...86,310,187 JBrowse link
G Stat5b signal transducer and activator of transcription 5B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103036 (PMID:15294943)
Ensembl
RGD
PMID:15294943 GO_REF:0000107 NCBI chr10:85,704,841...85,775,856 JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within ISO MGI:98510 (PMID:17452521) RGD PMID:17452521 NCBI chr 7:9,931,251...9,952,994 JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO MGI:3773716 (PMID:20818394) RGD PMID:20818394 NCBI chr 5:19,874,994...20,171,272 JBrowse link
Peyer's patch morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Artn artemin involved_in ISO (PMID:17322904) RGD PMID:17322904 NCBI chr 5:131,458,596...131,470,193 JBrowse link
G Foxl1 forkhead box L1 acts_upstream_of_or_within ISO MGI:2180191 (PMID:12648490) RGD PMID:12648490 NCBI chr19:49,197,269...49,200,682 JBrowse link
G Ret ret proto-oncogene involved_in ISO (PMID:17322904) RGD PMID:17322904 NCBI chr 4:152,998,344...153,040,556 JBrowse link
spleen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2153718 (PMID:2065352) RGD PMID:2065352 NCBI chr 3:35,377,587...35,480,843 JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO (PMID:17371977) RGD PMID:17371977 NCBI chr 6:40,872,936...40,920,700 JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (PMID:7732381), (PMID:8692887) RGD PMID:7732381 PMID:8692887 NCBI chr 6:57,961,423...57,998,901 JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO MGI:3578634 (PMID:17855428) RGD PMID:17855428 NCBI chr17:15,990,412...15,993,887 JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1197519|MGI:2156165 (PMID:15818405)
Ensembl
RGD
PMID:15818405 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330 JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO MGI:2158443 (PMID:10586052) RGD PMID:10586052 NCBI chr 1:79,471,368...79,485,908 JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (PMID:5037658) RGD PMID:5037658 NCBI chr 3:36,906,771...37,169,165 JBrowse link
G Cdh17 cadherin 17 involved_in ISO (PMID:15688343) RGD PMID:15688343 NCBI chr 5:25,262,820...25,314,884 JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B acts_upstream_of_or_within ISO MGI:97350|MGI:97495 (PMID:22560297) RGD PMID:22560297 NCBI chr 5:109,123,308...109,134,906 JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO MGI:2179530 (PMID:10521397) RGD PMID:10521397 NCBI chr 9:36,742,106...36,751,931 JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869 JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr 9:39,651,459...39,664,870 JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (PMID:22531781) RGD PMID:22531781 NCBI chr10:54,212,537...54,234,146 JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) RGD PMID:21307095 NCBI chr 6:123,627,529...123,692,278 JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 acts_upstream_of_or_within ISO MGI:2182816 (PMID:10359562) RGD PMID:10359562 NCBI chr 3:107,979,709...107,997,932 JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr 1:209,169,245...209,175,423 JBrowse link
G Fam210b family with sequence similarity 210, member B acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:39000360)
GO_REF:0000107
RGD
Ensembl
PMID:39000360 GO_REF:0000107 NCBI chr 3:181,536,665...181,546,830 JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within ISO MGI:1856334 (PMID:18199416) RGD PMID:18199416 NCBI chr 1:241,212,155...241,245,774 JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (PMID:15329346) RGD PMID:15329346 NCBI chr 2:50,801,171...50,878,218 JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:96995 (PMID:22674806) RGD PMID:22674806 NCBI chr12:12,660,035...12,735,584 JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO MGI:3776022 (PMID:18258918) RGD PMID:18258918 NCBI chr13:102,586,263...102,608,647 JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (PMID:14962901) RGD PMID:14962901 NCBI chr10:81,284,552...81,287,134 JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (PMID:9376320) RGD PMID:9376320 NCBI chr17:19,983,217...20,163,598 JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO MGI:95559 (PMID:22674806) RGD PMID:22674806 NCBI chr 8:54,013,547...54,089,219 JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2451080 (PMID:19179613)
Ensembl
RGD
PMID:19179613 GO_REF:0000107 NCBI chr 1:241,437,524...241,470,936 JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO MGI:2677048 (PMID:19360001) RGD PMID:19360001 NCBI chr 1:15,939,771...15,973,367 JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 acts_upstream_of_or_within ISO MGI:2179705 (PMID:10586052) RGD PMID:10586052 NCBI chr 1:255,106,010...255,114,649 JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (PMID:31182790) RGD PMID:31182790 NCBI chr11:58,251,720...58,279,767 JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680|MGI:2448069 (PMID:10207146), (PMID:10790368), (PMID:10926756) RGD PMID:10207146 PMID:10790368 PMID:10926756 NCBI chr 1:242,478,130...242,481,083 JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
(PMID:22560297)
MGI:104737|MGI:97495 (PMID:22560297)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:22560297 GO_REF:0000024 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458 JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:1857926|MGI:1931319|MGI:3848005 (PMID:10449756), (PMID:10572046), (PMID:15329346), (PMID:19208343) RGD PMID:10449756 PMID:10572046 PMID:15329346 PMID:19208343 NCBI chr14:69,183,795...69,186,182 JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:97,614,616...97,632,053 JBrowse link
G Onecut1 one cut homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2179340 (PMID:12874218)
Ensembl
RGD
PMID:12874218 GO_REF:0000107 NCBI chr 8:75,599,432...75,633,598 JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:104737|MGI:2155612|MGI:97350|MGI:98769 (PMID:15944191), (PMID:22560297) RGD PMID:15944191 PMID:22560297 NCBI chr13:80,278,766...80,588,563 JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (PMID:20870947) RGD PMID:20870947 NCBI chr16:83,125,386...83,150,851 JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 2:220,391,417...220,411,588 JBrowse link
G Pkn1 protein kinase N1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5475202 (PMID:23223530)
Ensembl
RGD
PMID:23223530 GO_REF:0000107 NCBI chr19:41,346,855...41,374,832 JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO MGI:5427084 (PMID:24388753) RGD PMID:24388753 NCBI chr16:69,379,438...69,402,710 JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3759678 (PMID:16129705)
Ensembl
RGD
PMID:16129705 GO_REF:0000107 NCBI chr 6:72,647,025...72,670,885 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:98,544,952...98,762,499 JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:24707720 RGD:9854625 NCBI chr20:4,668,952...4,674,421 JBrowse link
G Rbm15 RNA binding motif protein 15 acts_upstream_of_or_within ISO MGI:2656539|MGI:3706994 (PMID:18981216) RGD PMID:18981216 NCBI chr 2:197,634,174...197,642,697 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:2442789 (PMID:23583643) RGD PMID:23583643 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (PMID:23583643) RGD PMID:23583643 NCBI chr 3:21,121,531...21,186,711 JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO (PMID:26291700) RGD PMID:26291700 NCBI chr15:48,319,809...48,364,441 JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr15:33,253,071...33,262,025 JBrowse link
G Samd9l sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:31,362,054...31,376,412 JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr10:52,243,664...52,256,250 JBrowse link
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within ISO MGI:1889622 (PMID:15342464) RGD PMID:15342464 NCBI chr 9:55,525,457...55,633,463 JBrowse link
G Tcf21 transcription factor 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:10944221)
UniProt
RGD
PMID:10944221 GO_REF:0000024 NCBI chr 1:24,520,499...24,523,358 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (PMID:21803851) RGD PMID:21803851 NCBI chr 2:221,988,645...222,072,813 JBrowse link
G Tlx1 T-cell leukemia, homeobox 1 acts_upstream_of_or_within ISO MGI:3581680|MGI:97495 (PMID:11356032), (PMID:15944191) RGD PMID:11356032 PMID:15944191 NCBI chr 1:244,005,057...244,011,318 JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (PMID:22585710) RGD PMID:22585710 NCBI chr20:43,011,405...43,054,654 JBrowse link
spleen trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1889622 (PMID:15342464)
GO_REF:0000107
RGD
Ensembl
PMID:15342464 GO_REF:0000107 NCBI chr 9:55,525,457...55,633,463 JBrowse link
thymus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2153718 (PMID:2065352) RGD PMID:2065352 NCBI chr 3:35,377,587...35,480,843 JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO (PMID:21048919) RGD PMID:21048919 NCBI chr 3:167,265,435...167,270,197 JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:3589207|MGI:3688435 (PMID:16025118), (PMID:17002498) RGD PMID:16025118 PMID:17002498 NCBI chr18:26,138,382...26,196,021 JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (PMID:19861679) RGD PMID:19861679 NCBI chr 3:162,273,828...162,341,742 JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1926343 (PMID:8843194) RGD PMID:8843194 NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (PMID:12717433) RGD PMID:12717433 NCBI chr 6:126,834,531...126,927,720 JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1197519|MGI:1857134|MGI:2156165 (PMID:15818405), (PMID:9241272)
Ensembl
RGD
PMID:9241272 PMID:15818405 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:97847 (PMID:18952847) RGD PMID:18952847 NCBI chr 4:69,329,772...69,476,931 JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (PMID:5037658) RGD PMID:5037658 NCBI chr 3:36,906,771...37,169,165 JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within ISO MGI:5547539 (PMID:23793062) RGD PMID:23793062 NCBI chr19:33,571,255...33,586,783 JBrowse link
G Ccnb2 cyclin B2 acts_upstream_of_or_within ISO MGI:2429974 (PMID:9539739) RGD PMID:9539739 NCBI chr 8:79,968,459...79,981,717 JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:109360|MGI:2179740 (PMID:20549734) RGD PMID:20549734 NCBI chr 1:12,312,426...12,314,869 JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr 9:39,651,459...39,664,870 JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:97,033,033...97,067,457 JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (PMID:22531781) RGD PMID:22531781 NCBI chr10:54,212,537...54,234,146 JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858008 (PMID:16025118)
Ensembl
RGD
PMID:16025118 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO (PMID:19598115) RGD PMID:19598115 NCBI chr11:93,345,098...93,363,775 JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr 1:209,169,245...209,175,423 JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in ISO (PMID:17969154) RGD PMID:17969154 NCBI chr 2:50,801,171...50,878,218 JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:3027990 (PMID:17000704) RGD PMID:17000704 NCBI chr 1:200,001,162...200,005,539 JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 5:60,630,027...60,632,835 JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (PMID:31412026) RGD PMID:31412026 NCBI chr 4:102,933,487...102,937,655 JBrowse link
G Foxn1 forkhead box N1 acts_upstream_of_or_within IMP
ISO
MGI:5297717 (PMID:22072979) RGD PMID:22072979 PMID:8790387 RGD:1300512 NCBI chr10:63,749,461...63,778,468 JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2683927 (PMID:17082577) RGD PMID:17082577 NCBI chr17:68,643,760...68,666,000 JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19008477)
Ensembl
RGD
PMID:19008477 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488 JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20122914)
Ensembl
RGD
PMID:20122914 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,269,302...6,280,429 JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:1857992|MGI:96184|MGI:96207|MGI:97485 (PMID:11476574), (PMID:7635047), (PMID:9520319) RGD PMID:7635047 PMID:9520319 PMID:11476574 NCBI chr 4:81,269,243...81,313,218 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839 JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (PMID:9376320) RGD PMID:9376320 NCBI chr17:19,983,217...20,163,598 JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:1306784 (PMID:20549734) RGD PMID:20549734 NCBI chr 2:233,264,180...233,280,881 JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 acts_upstream_of_or_within ISO (PMID:11313860) RGD PMID:11313860 NCBI chr12:14,320,892...14,630,750 JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:3663168 (PMID:19164599) RGD PMID:19164599 NCBI chr 3:169,417,890...169,419,810 JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346867 (PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184 JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346866 (PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 NCBI chr 7:9,241,449...9,264,216 JBrowse link
G Mapk1 mitogen activated protein kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346859 (PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193 JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411 JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO MGI:3047076 (PMID:17927961) RGD PMID:17927961 NCBI chr 1:15,939,771...15,973,367 JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 acts_upstream_of_or_within ISO MGI:2182778 (PMID:9768749) RGD PMID:9768749 NCBI chr19:50,870,464...50,944,992 JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:97,614,616...97,632,053 JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:96175 (PMID:11476574) RGD PMID:11476574 NCBI chr 3:134,792,330...134,801,637 JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:2155612 (PMID:15581866) RGD PMID:15581866 NCBI chr13:80,278,766...80,588,563 JBrowse link
G Prdx2 peroxiredoxin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668456 (PMID:15259009)
Ensembl
RGD
PMID:15259009 GO_REF:0000107 NCBI chr19:23,180,927...23,186,217 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:98,544,952...98,762,499 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284|MGI:1930934 (PMID:17698590) RGD PMID:17698590 NCBI chr 6:109,054,160...109,106,191 JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:17698590) RGD PMID:17698590 NCBI chr13:94,499,451...94,528,419 JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:18457575 RGD:9850287 NCBI chr20:4,668,952...4,674,421 JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88190 (PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 NCBI chr 4:150,352,158...150,412,813 JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within ISO MGI:1353616 (PMID:18684012) RGD PMID:18684012 NCBI chr 3:87,917,061...87,928,158 JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 NCBI chr15:33,253,071...33,262,025 JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr10:52,243,664...52,256,250 JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19109233)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19109233 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170 JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034|MGI:2655195 (PMID:16530750) RGD PMID:16530750 NCBI chr 6:97,482,617...97,487,853 JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:16530750) RGD PMID:16530750 NCBI chr 6:91,802,328...91,816,002 JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within ISO MGI:97848 (PMID:18684012) RGD PMID:18684012 NCBI chr 5:74,800,226...74,808,128 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (PMID:18952847) RGD PMID:18952847 NCBI chr 9:21,924,050...21,933,338 JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:31412026)
MGI:3664784 (PMID:17916582)
(PMID:14585638)
UniProt
RGD
PMID:14585638 PMID:17916582 PMID:31412026 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058 JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386570|MGI:2388050 (PMID:17078885)
Ensembl
RGD
PMID:17078885 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371 JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within ISO MGI:1856308 (PMID:10890980) RGD PMID:10890980 NCBI chr 1:150,527,687...150,622,857 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:22201126) RGD PMID:22201126 NCBI chr 6:95,096,838...95,125,811 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:11923874) RGD PMID:11923874 NCBI chr 5:139,912,395...139,945,532 JBrowse link
thymus epithelium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in IBA
ISO
GO_REF:0000033
(PMID:19015306)
GO_Central
RGD
PMID:19015306 GO_REF:0000033 NCBI chr20:10,635,775...10,650,709 JBrowse link
G Foxn1 forkhead box N1 involved_in ISO (PMID:21109991) RGD PMID:21109991 NCBI chr10:63,749,461...63,778,468 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    immune system process 3112
      immune system development 240
        hematopoietic or lymphoid organ development 131
          bone marrow development 11
          bursa of Fabricius development 0
          head kidney development + 0
          lymph gland development + 0
          lymph node development 25
          mucosa-associated lymphoid tissue development + 13
          spleen development + 54
          thymus development + 63
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        multicellular organism development 5329
          system development 4611
            immune system development 240
              hematopoietic or lymphoid organ development 131
                bone marrow development 11
                bursa of Fabricius development 0
                head kidney development + 0
                lymph gland development + 0
                lymph node development 25
                mucosa-associated lymphoid tissue development + 13
                spleen development + 54
                thymus development + 63
paths to the root