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ONTOLOGY REPORT - ANNOTATIONS

Term:eye pigmentation
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Accession:GO:0048069 term browser browse the term
Definition:Establishment of a pattern of pigment in the eye of an organism.
Synonyms:xref: Wikipedia:Eye_color


show annotations for term's descendants           Sort by:
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:17464332)
GO_REF:0000107		 RGD
Ensembl		 PMID:17464332 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO
IEA		 MGI:4460276 (PMID:22664872)
GO_REF:0000107		 RGD
Ensembl		 PMID:22664872 GO_REF:0000107 NCBI chr10:57,565,909...57,604,546
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:49,285,228...49,395,803
Ensembl chr12:43,624,897...43,731,262 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    pigmentation 110
      developmental pigmentation 56
        eye pigmentation 6
          compound eye pigmentation + 0
          eye pigment metabolic process + 1
          negative regulation of eye pigmentation + 1
          positive regulation of eye pigmentation + 0
          regulation of eye pigmentation + 2
paths to the root