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ONTOLOGY REPORT - ANNOTATIONS


Term:developmental pigmentation
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Accession:GO:0048066 term browser browse the term
Definition:The developmental process that results in the deposition of coloring matter in an organism, tissue or cell.
Synonyms:related_synonym: pigmentation during development



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developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMACR alpha-methylacyl-CoA racemase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:20,005,741...20,023,339
Ensembl chr16:19,956,366...20,023,289
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:45,156,791...45,202,996
Ensembl chr 3:45,160,155...45,201,186
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within ISO (PMID:15102850), (PMID:7203014) MGI PMID:7203014 PMID:15102850 NCBI chr 6:51,590,497...51,591,222
Ensembl chr 6:51,590,497...51,591,222
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,655...5,363,538
JBrowse link
G DCT dopachrome tautomerase involved_in
acts_upstream_of_or_within
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr11:63,584,865...63,647,486
Ensembl chr11:63,584,869...63,678,344
JBrowse link
G EDNRA endothelin receptor type A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:81,210,750...81,279,053
Ensembl chr 8:81,209,327...81,276,853
JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884
JBrowse link
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:75,439,405...75,456,855
Ensembl chr 2:75,437,201...75,457,092
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,734
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:118,208,681...118,273,725
Ensembl chr15:118,208,684...118,273,680
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:15550542) MGI PMID:15550542 NCBI chr 1:119,165,751...119,398,591
Ensembl chr 1:119,165,942...119,394,725
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO (PMID:11756244) MGI PMID:11756244 NCBI chr15:56,657,648...56,869,920
Ensembl chr15:56,657,616...56,869,918
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr15:124,093,803...124,193,041
Ensembl chr15:124,094,295...124,193,011
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in
acts_upstream_of_or_within
ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr16:19,958,315...20,002,198
Ensembl chr16:19,956,366...20,023,289
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) BHF-UCL PMID:24769727 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chr11:68,840,802...68,845,441
Ensembl chr11:68,840,631...68,845,378
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,501,167...42,559,926
Ensembl chr 6:42,501,165...42,559,912
JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:14,719,949...14,809,821
Ensembl chr 6:14,719,959...14,809,491
JBrowse link
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:61,356,369...61,386,133
Ensembl chr 2:61,355,547...61,386,169
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,476...76,471,257
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:51,590,497...51,591,222
Ensembl chr 6:51,590,497...51,591,222
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,655...5,363,538
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,168,944...126,184,813
Ensembl chr 1:126,165,994...126,184,858
JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,172,275...21,176,225
Ensembl chr 5:21,172,283...21,176,232
JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,076,301...19,097,647
Ensembl chr 1:19,075,271...19,097,870
JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:21,577,083...21,640,637
Ensembl chr 9:21,577,033...21,640,115
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (PMID:15205258) MGI PMID:15205258 NCBI chr 1:7,679,352...7,689,564
Ensembl chr 1:7,679,352...7,689,560
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:36,271,154...36,300,240
Ensembl chr  X:36,271,223...36,300,240
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr14:109,730,597...109,755,288
Ensembl chr14:109,730,598...109,751,985
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:66,334,535...66,342,401
Ensembl chr13:66,334,591...66,342,654
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 5:74,502,098...74,672,703
Ensembl chr 5:74,503,113...74,672,703
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr13:46,033,753...46,209,238
Ensembl chr13:46,034,833...46,207,006
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of
acts_upstream_of_or_within
ISO
IEA
(PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:126,168,944...126,184,813
Ensembl chr 1:126,165,994...126,184,858
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr  X:58,179,084...58,184,778
Ensembl chr  X:58,179,087...58,184,499
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (PMID:9012511) MGI PMID:9012511 NCBI chr17:59,418,667...59,448,382
Ensembl chr17:59,425,495...59,448,362
JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within ISO
IEA
RGD
Ensembl
PMID:11709437 GO_REF:0000107 RGD:628459 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:11836498) MGI PMID:11836498 NCBI chr14:109,730,597...109,755,288
Ensembl chr14:109,730,598...109,751,985
JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:44,041,684...44,073,661
Ensembl chr14:44,049,707...44,073,621
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,734
JBrowse link
G LOC100625684 olfactory receptor 51E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,431,098...5,434,483
Ensembl chr 9:5,432,611...5,433,573
JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:77,957,833...79,051,540
Ensembl chr14:77,957,851...79,051,455
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:96,122,407...96,296,927
Ensembl chr 2:96,124,168...96,296,810
JBrowse link
G MITF melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr13:51,177,356...51,422,096
Ensembl chr13:51,178,203...51,422,093
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (PMID:11504925), (PMID:2379821) MGI PMID:2379821 PMID:11504925 NCBI chr15:137,173,962...137,219,724
Ensembl chr15:137,174,009...137,219,713
JBrowse link
G MREG melanoregulin involved_in
acts_upstream_of_or_within
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr15:118,208,681...118,273,725
Ensembl chr15:118,208,684...118,273,680
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:1996138), (PMID:2379821), (PMID:7828830) MGI PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr 1:119,165,751...119,398,591
Ensembl chr 1:119,165,942...119,394,725
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:2379821) MGI
GO_Central
PMID:2379821 GO_REF:0000033 NCBI chr15:56,657,648...56,869,920
Ensembl chr15:56,657,616...56,869,918
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:116,532,816...116,606,477
Ensembl chr 1:116,532,974...116,606,474
JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within
ISS
IEA
AgBase
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:9,890,439...9,901,746
Ensembl chr 5:9,891,525...9,901,743
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in
acts_upstream_of_or_within
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 NCBI chr 1:209,725,698...209,745,141
Ensembl chr 1:209,725,638...209,745,705
JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:4,069,267...4,105,065
Ensembl chr 2:4,069,280...4,105,042
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTSL4 ADAMTS like 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:98,577,813...98,589,255
Ensembl chr 4:98,577,823...98,589,180
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,172,275...21,176,225
Ensembl chr 5:21,172,283...21,176,232
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,172,275...21,176,225
Ensembl chr 5:21,172,283...21,176,232
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,222,336...54,228,147
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:74,502,098...74,672,703
Ensembl chr 5:74,503,113...74,672,703
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:46,033,753...46,209,238
Ensembl chr13:46,034,833...46,207,006
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879
JBrowse link
G KITLG KIT ligand acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:94,016,992...94,110,219
Ensembl chr 5:94,017,387...94,110,214
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) BHF-UCL PMID:24769727 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,655...5,363,538
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,168,944...126,184,813
Ensembl chr 1:126,165,994...126,184,858
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:74,502,098...74,672,703
Ensembl chr 5:74,503,113...74,672,703
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:46,033,753...46,209,238
Ensembl chr13:46,034,833...46,207,006
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,337,522...158,518,879
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:45,156,791...45,202,996
Ensembl chr 3:45,160,155...45,201,186
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (PMID:14138974) MGI PMID:14138974 NCBI chr17:59,418,667...59,448,382
Ensembl chr17:59,425,495...59,448,362
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:30,469,003...30,496,626
Ensembl chr14:30,469,070...30,495,470
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPNS2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:50,454,051...50,491,172
Ensembl chr12:50,454,063...50,491,164
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:75,439,405...75,456,855
Ensembl chr 2:75,437,201...75,457,092
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr14:43,305,255...43,445,626
Ensembl chr14:43,224,930...43,442,965
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    pigmentation 104
      developmental pigmentation 53
        cuticle pigmentation + 0
        eye pigment precursor transport 0
        eye pigmentation + 6
        negative regulation of developmental pigmentation + 2
        pigment cell differentiation + 38
        pigment metabolic process involved in developmental pigmentation + 1
        positive regulation of developmental pigmentation + 8
        regulation of developmental pigmentation + 14
        sex-specific pigmentation + 0
paths to the root