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ONTOLOGY REPORT - ANNOTATIONS

Term:developmental pigmentation
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Accession:GO:0048066 term browser browse the term
Definition:The developmental process that results in the deposition of coloring matter in an organism, tissue or cell.
Synonyms:related_synonym: pigmentation during development

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developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:11709185) MGI PMID:11709185 NCBI chr14:14,178,159...14,205,337 JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:38,623,639...38,642,217
Ensembl chr 6:38,639,659...38,640,261 		JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:64,095,766...64,149,918
Ensembl chr17:64,095,826...64,147,537 		JBrowse link
G DCT dopachrome tautomerase involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:73,246,161...73,315,574
Ensembl chr 3:73,274,621...73,313,905 		JBrowse link
G EDNRA endothelin receptor type A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:93,980,983...94,043,863
Ensembl chr 7:93,985,797...94,042,296 		JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:56,969,493...56,993,719
Ensembl chr 3:56,969,101...56,992,731 		JBrowse link
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:2,858,880...2,887,694
Ensembl chr 6:2,858,937...2,887,704 		JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr12:88,666,375...88,988,989
Ensembl chr12:88,670,424...88,871,154 		JBrowse link
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:46,620,544...46,665,334
Ensembl chr 1:46,619,914...46,664,126 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:13,808,104...13,891,003
Ensembl chr 7:13,808,037...13,890,976 		JBrowse link
G MREG melanoregulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:101,791,816...101,864,958
Ensembl chr10:101,789,059...101,864,172 		JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:15550542) MGI PMID:15550542 NCBI chr26:30,865,947...31,085,184 JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:54,022,346...54,429,991
Ensembl chr26:54,039,197...54,352,774 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr10:108,125,198...108,225,217
Ensembl chr10:108,125,747...108,224,478 		JBrowse link
G SLC45A2 solute carrier family 45 member 2 acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:35469906) Ensembl
UniProt		 PMID:35469906 GO_REF:0000107 NCBI chr 4:33,178,614...33,219,664
Ensembl chr 4:33,179,349...33,219,028 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:29,732,934...29,864,157
Ensembl chr10:29,729,305...29,864,205 		JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chr 3:78,631,556...78,637,422
Ensembl chr 3:78,631,530...78,636,548 		JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:27,645,474...27,724,829
Ensembl chr 6:27,644,597...27,724,819 		JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:54,850,831...54,944,915
Ensembl chr 5:54,850,694...54,944,900 		JBrowse link
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:14,704,940...14,743,627
Ensembl chr 6:14,705,089...14,743,702 		JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,901,669...1,951,352
Ensembl chr 6:1,901,507...1,951,314 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,623,639...38,642,217
Ensembl chr 6:38,639,659...38,640,261 		JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:64,095,766...64,149,918
Ensembl chr17:64,095,826...64,147,537 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:37,605,891...37,622,302
Ensembl chr26:37,604,412...37,622,083 		JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,673,402...51,677,075
Ensembl chr11:51,672,740...51,676,301 		JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr13:25,265,831...25,281,106 JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:79,256,996...79,316,967
Ensembl chr 1:79,256,835...79,316,789 		JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (PMID:15205258) MGI PMID:15205258 NCBI chr13:87,284,537...87,297,998
Ensembl chr13:87,280,686...87,297,974 		JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:37,742,550...37,769,022
Ensembl chr  X:37,742,545...37,769,062 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 9:91,575,408...91,606,514
Ensembl chr 9:91,576,600...91,604,972 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:46,184,621...46,203,065
Ensembl chr22:46,184,756...46,204,428 		JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:39,571,228...39,768,386
Ensembl chr11:39,572,013...39,767,590 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr22:25,545,518...25,720,512
Ensembl chr22:25,545,420...25,719,362 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16427619) MGI
Ensembl		 PMID:16427619 GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:37,605,891...37,622,302
Ensembl chr26:37,604,412...37,622,083 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:62,126,383...62,131,919
Ensembl chr  X:62,126,320...62,130,220 		JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:4,814,447...4,839,950
Ensembl chr 2:4,814,140...4,839,626 		JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within ISO
IEA		 RGD
Ensembl		 PMID:11709437 GO_REF:0000107 RGD:628459 NCBI chr 3:56,969,493...56,993,719
Ensembl chr 3:56,969,101...56,992,731 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:28964717) UniProt PMID:28964717 NCBI chr13:41,670,416...41,755,549 JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:41,681,213...41,755,382 JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:11836498) MGI PMID:11836498 NCBI chr 9:91,575,408...91,606,514
Ensembl chr 9:91,576,600...91,604,972 		JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:9,356,868...9,387,847
Ensembl chr19:9,356,145...9,386,254 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,808,104...13,891,003
Ensembl chr 7:13,808,037...13,890,976 		JBrowse link
G LOC103247947 olfactory receptor 51E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:62,172,573...62,180,085
Ensembl chr 1:62,177,553...62,178,515 		JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) UniProt PMID:23395477 NCBI chr 9:54,838,434...55,976,189 JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 9:55,328,549...55,352,267 JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (PMID:21610032) UniProt PMID:21610032 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12086670)
(PMID:2379821)		 MGI
TreeGrafter		 PMID:2379821 PMID:12086670 GO_REF:0000118 NCBI chr22:30,747,747...30,971,951
Ensembl chr22:30,748,440...30,972,168 		JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (PMID:11504925), (PMID:2379821) MGI PMID:2379821 PMID:11504925 NCBI chr10:123,489,777...123,562,037
Ensembl chr10:123,491,702...123,562,906 		JBrowse link
G MREG melanoregulin involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:101,791,816...101,864,958
Ensembl chr10:101,789,059...101,864,172 		JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:1996138), (PMID:2379821), (PMID:7828830) MGI PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr26:30,865,947...31,085,184 JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:54,022,346...54,429,991
Ensembl chr26:54,039,197...54,352,774 		JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:28,140,972...28,227,847
Ensembl chr26:28,197,464...28,227,963 		JBrowse link
G SLC24A5 solute carrier family 24 member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:35,143,004...35,164,134
Ensembl chr26:35,143,097...35,163,718 		JBrowse link
G SOX10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO (PMID:16790476) MGI PMID:16790476 NCBI chr19:20,673,053...20,685,506 JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:66,841,867...66,861,730
Ensembl chr12:66,842,926...66,859,842 		JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:5,491,476...5,529,015
Ensembl chr 1:5,490,910...5,528,718 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTSL4 ADAMTS like 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,673,402...51,677,075
Ensembl chr11:51,672,740...51,676,301 		JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,673,402...51,677,075
Ensembl chr11:51,672,740...51,676,301 		JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:9241272) MGI PMID:9241272 NCBI chr 6:42,186,028...42,193,105 JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 6:42,186,238...42,194,115 JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:39,571,228...39,768,386
Ensembl chr11:39,572,013...39,767,590 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:25,545,518...25,720,512
Ensembl chr22:25,545,420...25,719,362 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G KITLG KIT ligand acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:83,856,149...83,943,095
Ensembl chr11:83,856,157...83,943,083 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:29,732,934...29,864,157
Ensembl chr10:29,729,305...29,864,205 		JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:64,095,766...64,149,918
Ensembl chr17:64,095,826...64,147,537 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:37,605,891...37,622,302
Ensembl chr26:37,604,412...37,622,083 		JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:39,571,228...39,768,386
Ensembl chr11:39,572,013...39,767,590 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:25,545,518...25,720,512
Ensembl chr22:25,545,420...25,719,362 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15818405) MGI PMID:15818405 NCBI chr14:14,178,159...14,205,337 JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:4,814,447...4,839,950
Ensembl chr 2:4,814,140...4,839,626 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:117,585,325...117,618,713
Ensembl chr11:117,582,781...117,615,743 		JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPNS2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:3,978,262...4,019,950
Ensembl chr16:3,978,845...4,022,678 		JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:2,858,880...2,887,694
Ensembl chr 6:2,858,937...2,887,704 		JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr12:88,666,375...88,988,989
Ensembl chr12:88,670,424...88,871,154 		JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr19:8,438,543...8,601,652
Ensembl chr19:8,438,380...8,600,359 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    pigmentation 111
      developmental pigmentation 57
        cuticle pigmentation + 0
        eye pigment precursor transport 0
        eye pigmentation + 6
        negative regulation of developmental pigmentation + 2
        pigment cell differentiation + 41
        pigment metabolic process involved in developmental pigmentation + 1
        positive regulation of developmental pigmentation + 9
        regulation of developmental pigmentation + 15
        sex-specific pigmentation + 0
paths to the root