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ONTOLOGY REPORT - ANNOTATIONS

Term:developmental pigmentation
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Accession:GO:0048066 term browser browse the term
Definition:The developmental process that results in the deposition of coloring matter in an organism, tissue or cell.
Synonyms:related_synonym: pigmentation during development


show annotations for term's descendants           Sort by:
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMACR alpha-methylacyl-CoA racemase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:73,815,438...73,836,016
Ensembl chr 4:73,815,291...73,867,437 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:11709185) MGI PMID:11709185 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442 		JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO (PMID:11912185) MGI PMID:11912185 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505 		JBrowse link
G DCT dopachrome tautomerase involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346 		JBrowse link
G EDNRA endothelin receptor type A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:45,823,472...45,878,527
Ensembl chr15:45,823,560...45,876,463 		JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587 		JBrowse link
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065 		JBrowse link
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr21:40,725,089...40,770,665
Ensembl chr21:40,726,274...40,770,112 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029 		JBrowse link
G MREG melanoregulin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600 		JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:15550542) MGI PMID:15550542 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061 		JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr37:28,346,476...28,443,648
Ensembl chr37:28,346,563...28,444,561 		JBrowse link
G SLC45A2 solute carrier family 45 member 2 acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:35469906) Ensembl
UniProt		 PMID:35469906 GO_REF:0000107 NCBI chr 4:73,838,684...73,868,222
Ensembl chr 4:73,815,291...73,867,437 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122 		JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:10932191) MGI PMID:10932191 NCBI chr22:49,948,743...49,952,007
Ensembl chr22:49,948,778...49,950,055 		JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:119,325,132...119,377,266
Ensembl chr 1:119,325,873...119,376,948 		JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr 5:77,512,865...77,589,136
Ensembl chr 5:77,432,517...77,565,801 		JBrowse link
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:46,261,799...46,290,387
Ensembl chr20:46,261,803...46,290,342 		JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442 		JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353 		JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742 		JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:37,706,809...37,719,044
Ensembl chr 1:37,712,142...37,718,266 		JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815 		JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (PMID:15205258) MGI PMID:15205258 NCBI chr 1:48,943,472...48,955,158
Ensembl chr 1:48,836,262...48,955,706 		JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:35,050,588...35,073,633
Ensembl chr  X:35,050,606...35,073,067 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323 		JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16427619) MGI
Ensembl		 PMID:16427619 GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:2379821) MGI PMID:2379821 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:56,327,104...56,332,608
Ensembl chr  X:56,327,182...56,332,047 		JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (PMID:9012511) MGI PMID:9012511 NCBI chr24:44,024,553...44,054,727
Ensembl chr24:44,033,419...44,054,050 		JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within ISO
IEA		 RGD
Ensembl		 PMID:11709437 GO_REF:0000107 RGD:628459 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:28964717) UniProt PMID:28964717 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:11836498) MGI PMID:11836498 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613 		JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:20,131,658...20,157,532
Ensembl chr26:19,933,281...20,157,058 		JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029 		JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:25,610,656...26,636,351
Ensembl chr 4:25,610,174...26,633,127 		JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (PMID:21610032) UniProt PMID:21610032 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MITF melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:21,772,147...21,873,545
Ensembl chr20:21,612,927...21,870,578 		JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (PMID:11504925), (PMID:2379821) MGI PMID:2379821 PMID:11504925 NCBI chr25:48,121,499...48,167,535
Ensembl chr25:48,121,499...48,170,710 		JBrowse link
G MREG melanoregulin involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600 		JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:1996138), (PMID:2379821), (PMID:7828830) MGI PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061 		JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572 		JBrowse link
G OR51E2 olfactory receptor family 51 subfamily E member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:27,078,888...27,081,746
Ensembl chr21:27,080,476...27,081,438 		JBrowse link
G OR51F23 olfactory receptor family 51 subfamily F member 23 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:27,089,071...27,090,339
Ensembl chr21:27,089,139...27,090,068 		JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521 		JBrowse link
G SOX10 SRY-box transcription factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:26,680,441...26,690,530
Ensembl chr10:26,681,122...26,689,882 		JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:2379821) MGI
GO_Central		 PMID:2379821 GO_REF:0000033 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498 		JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:48,956,833...48,984,499
Ensembl chr18:48,957,249...48,984,564 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr37:25,616,942...25,622,989 JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTSL4 ADAMTS like 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:59,736,628...59,747,689
Ensembl chr17:59,736,534...59,746,980 		JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742 		JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742 		JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G KITLG KIT ligand acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:29,591,068...29,671,985
Ensembl chr15:29,591,170...29,671,974 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122 		JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353 		JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15818405) MGI PMID:15818405 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587 		JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (PMID:14138974) MGI PMID:14138974 NCBI chr24:44,024,553...44,054,727
Ensembl chr24:44,033,419...44,054,050 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:7,090,669...7,119,913 JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPNS2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:30,494,355...30,527,669 JBrowse link
G SPNS3 SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:30,464,288...30,493,609
Ensembl chr 5:30,464,513...30,526,882 		JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15322542) MGI PMID:15322542 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065 		JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr26:19,385,059...19,512,528
Ensembl chr26:19,385,058...19,516,077 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22141
    pigmentation 108
      developmental pigmentation 56
        cuticle pigmentation + 0
        eye pigment precursor transport 0
        eye pigmentation + 7
        negative regulation of developmental pigmentation + 2
        pigment cell differentiation + 39
        pigment metabolic process involved in developmental pigmentation + 1
        positive regulation of developmental pigmentation + 8
        regulation of developmental pigmentation + 15
        sex-specific pigmentation + 0
paths to the root