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ONTOLOGY REPORT - ANNOTATIONS

Term:developmental pigmentation
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Accession:GO:0048066 term browser browse the term
Definition:The developmental process that results in the deposition of coloring matter in an organism, tissue or cell.
Synonyms:related_synonym: pigmentation during development


show annotations for term's descendants           Sort by:
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (PMID:11709185), (PMID:8170972) RGD PMID:8170972 PMID:11709185 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:11709185) RGD PMID:11709185 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857021 (PMID:15102850), (PMID:7203014)
GO_REF:0000107		 RGD
Ensembl		 PMID:7203014 PMID:15102850 GO_REF:0000107 NCBI chr 1:88,283,864...88,286,244
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:11912185) RGD PMID:11912185 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:1856379 (PMID:15060160)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15060160 GO_REF:0000033 GO_REF:0000107 NCBI chr15:101,469,159...101,508,029
Ensembl chr15:95,062,003...95,100,836 		JBrowse link
G Ednra endothelin receptor type A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1856149 (PMID:15322542)		 GO_Central
Ensembl
RGD		 PMID:15322542 GO_REF:0000033 GO_REF:0000107 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Gna11 G protein subunit alpha 11 acts_upstream_of_or_within ISO
IEA		 MGI:2151589 (PMID:15322542)
GO_REF:0000107		 RGD
Ensembl		 PMID:15322542 GO_REF:0000107 NCBI chr 7:8,814,285...8,828,628
Ensembl chr 7:8,162,750...8,179,812 		JBrowse link
G Gnaq G protein subunit alpha q acts_upstream_of_or_within ISO MGI:2151661 (PMID:15322542) RGD PMID:15322542 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO
IEA		 MGI:1856161|MGI:1856164|MGI:1856266|MGI:2449782|MGI:2660628 (PMID:15322542), (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:15322542 PMID:18454205 GO_REF:0000107 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO
IEA		 MGI:1856847 (PMID:15550542)
GO_REF:0000107		 RGD
Ensembl		 PMID:15550542 GO_REF:0000107 NCBI chr 9:81,236,019...81,291,601
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:15550542) RGD PMID:15550542 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO
IEA		 MGI:1856123 (PMID:11756244)
GO_REF:0000107		 RGD
Ensembl		 PMID:11756244 GO_REF:0000107 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1856173 (PMID:15322542) RGD PMID:15322542 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Saa4 serum amyloid A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,247,580...97,251,882 JBrowse link
G Slc45a2 solute carrier family 45, member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1856227|MGI:1856581|MGI:1857540 (PMID:11700328)
GO_REF:0000107
(PMID:35469906)		 RGD
Ensembl		 PMID:11700328 PMID:35469906 GO_REF:0000107 NCBI chr 2:59,963,599...59,996,408
Ensembl chr 2:59,963,706...59,996,317 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO
IEA		 (PMID:24769727)
GO_REF:0000107		 RGD
Ensembl		 PMID:24769727 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1861983 (PMID:10932191) RGD PMID:10932191 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO
IEA		 (PMID:21187829)
GO_REF:0000107		 RGD
Ensembl		 PMID:21187829 GO_REF:0000107 NCBI chr 1:97,387,997...97,440,501
Ensembl chr 1:88,251,226...88,303,615 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO
IEA		 (PMID:22511774)
GO_REF:0000107		 RGD
Ensembl		 PMID:22511774 GO_REF:0000107 NCBI chr19:54,654,101...54,740,586
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO
IEA		 (PMID:19841138)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841138 GO_REF:0000107 NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,584,730...17,602,403 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO
IEA		 (PMID:22511774)
GO_REF:0000107		 RGD
Ensembl		 PMID:22511774 GO_REF:0000107 NCBI chr 7:9,620,909...9,656,350
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO
IEA		 (PMID:17182842)
GO_REF:0000107		 RGD
Ensembl		 PMID:17182842 GO_REF:0000107 NCBI chr 1:88,283,864...88,286,244
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17182842)		 UniProt
Ensembl
RGD		 PMID:17182842 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cd63 Cd63 molecule involved_in ISO
IEA
ISS		 (PMID:21962903)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,909,538...1,924,937
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO
IEA		 (PMID:22511774)
GO_REF:0000107		 RGD
Ensembl		 PMID:22511774 GO_REF:0000107 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857344 (PMID:15205258)
GO_REF:0000107		 RGD
Ensembl		 PMID:15205258 GO_REF:0000107 NCBI chr 1:50,043,323...50,050,168
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of ISO
IEA		 MGI:1916320|MGI:3766915 (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:18454205 GO_REF:0000107 NCBI chr 7:127,275,538...127,407,325
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of ISO
IEA		 MGI:2660628 (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:18454205 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:104554|MGI:2156165|MGI:2158305 (PMID:11709185), (PMID:12086670), (PMID:8758925)
MGI:2158305 (PMID:16427619)		 RGD PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO
IEA		 MGI:1856982 (PMID:2379821)
GO_REF:0000107		 RGD
Ensembl		 PMID:2379821 GO_REF:0000107 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO
IEA
IBA
ISS		 (PMID:8901575)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:8901575 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:71,390,328...71,395,023
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Cited1l1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:214,189,909...214,190,641
Ensembl chr 1:204,760,188...204,761,398 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (PMID:9012511) RGD PMID:9012511 NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
IEA
ISO		 GO_REF:0000107
MGI:1856148 (PMID:2379821), (PMID:9012511)		 Ensembl
RGD		 PMID:2379821 PMID:9012511 PMID:11709437 GO_REF:0000107, RGD:628459 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS		 (PMID:28964717)
GO_REF:0000024		 RGD
UniProt		 PMID:28964717 GO_REF:0000024 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G ENSRNOG00000066743 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:204,760,188...204,761,398 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:3720956 (PMID:18397875)
GO_REF:0000107		 RGD
Ensembl		 PMID:18397875 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (PMID:11836498) RGD PMID:11836498 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (PMID:11836498) RGD PMID:11836498 NCBI chr12:49,924,444...49,955,201
Ensembl chr12:44,264,037...44,294,632 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO
IEA		 (PMID:15768389)
GO_REF:0000107		 RGD
Ensembl		 PMID:15768389 GO_REF:0000107 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO
IBA		 (PMID:23395477)
GO_REF:0000033		 RGD
GO_Central		 PMID:23395477 GO_REF:0000033 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO		 GO_REF:0000024
(PMID:21610032)		 UniProt
RGD		 PMID:21610032 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821)		 GO_Central
Ensembl
RGD		 PMID:2379821 PMID:12086670 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:11504925), (PMID:2379821) RGD PMID:2379821 PMID:11504925 NCBI chr 9:98,955,036...98,990,566
Ensembl chr 9:91,507,591...91,542,983 		JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1856847 (PMID:2379821), (PMID:7828830)		 GO_Central
Ensembl
RGD		 PMID:2379821 PMID:7828830 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:81,236,019...81,291,601
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:1996138), (PMID:2379821), (PMID:7828830) RGD PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:1856114 (PMID:2379821)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:2379821 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:27226631)		 Ensembl
UniProt
RGD		 PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:166,604,972...166,639,634
Ensembl chr 1:157,193,080...157,211,179 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO
IEA		 MGI:1856656 (PMID:2379821)
GO_REF:0000107		 RGD
Ensembl		 PMID:2379821 GO_REF:0000107 MGI:52947 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:3701358 (PMID:16790476)
GO_REF:0000107		 RGD
Ensembl		 PMID:16790476 GO_REF:0000107 NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1855962 (PMID:2379821)		 GO_Central
Ensembl
RGD		 PMID:2379821 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:100,327,111...100,345,657
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpcn2 two pore segment channel 2 involved_in ISO
IEA		 (PMID:27140606)
GO_REF:0000107
(PMID:27231233)		 RGD
Ensembl		 PMID:27140606 PMID:27231233 GO_REF:0000107 NCBI chr 1:209,845,827...209,875,561
Ensembl chr 1:200,416,540...200,446,236 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:17464332)
GO_REF:0000107		 RGD
Ensembl		 PMID:17464332 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl4 ADAMTS-like 4 acts_upstream_of_or_within ISO
IEA		 (PMID:26405179)
GO_REF:0000107		 RGD
Ensembl		 PMID:26405179 GO_REF:0000107 NCBI chr 2:185,924,582...185,936,039
Ensembl chr 2:183,235,646...183,246,848 		JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
IEA		 (PMID:21962903)
GO_REF:0000107		 RGD
Ensembl		 PMID:21962903 GO_REF:0000107 NCBI chr 7:1,909,538...1,924,937
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
IEA
ISS		 (PMID:21962903)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,909,538...1,924,937
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:99702 (PMID:9241272)
GO_REF:0000107		 RGD
Ensembl		 PMID:9241272 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (PMID:9241272) RGD PMID:9241272 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO
IEA		 MGI:1916320|MGI:3766915 (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:18454205 GO_REF:0000107 NCBI chr 7:127,275,538...127,407,325
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 MGI:2660628 (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:18454205 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:2158305 (PMID:16427619) RGD PMID:16427619 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO
IEA		 (PMID:16427619)
GO_REF:0000107		 RGD
Ensembl		 PMID:16427619 GO_REF:0000107 NCBI chr 7:36,782,621...36,863,796
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO
IEA		 (PMID:24769727)
GO_REF:0000107		 RGD
Ensembl		 PMID:24769727 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:17182842)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17182842 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:130,269,979...130,280,109
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO
IEA		 MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (PMID:14138974), (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:14138974 PMID:18454205 GO_REF:0000107 NCBI chr 7:127,275,538...127,407,325
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 MGI:2660628 (PMID:18454205)
GO_REF:0000107		 RGD
Ensembl		 PMID:18454205 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (PMID:15818405) RGD PMID:15818405 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (PMID:14138974) RGD PMID:14138974 NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO
IEA		 MGI:1856687 (PMID:12538872)
GO_REF:0000107		 RGD
Ensembl		 PMID:12538872 GO_REF:0000107 NCBI chr12:38,685,484...38,710,668
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO
IEA		 MGI:4460276 (PMID:22664872)
GO_REF:0000107		 RGD
Ensembl		 PMID:22664872 GO_REF:0000107 NCBI chr10:57,565,909...57,604,546
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 acts_upstream_of_or_within ISO
IEA		 MGI:2682213 (PMID:15322542)
GO_REF:0000107		 RGD
Ensembl		 PMID:15322542 GO_REF:0000107 NCBI chr 7:8,814,285...8,828,628
Ensembl chr 7:8,162,750...8,179,812 		JBrowse link
G Gnaq G protein subunit alpha q acts_upstream_of_or_within ISO MGI:2681766 (PMID:15322542) RGD PMID:15322542 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:49,285,228...49,395,803
Ensembl chr12:43,624,897...43,731,262 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    pigmentation 110
      developmental pigmentation 56
        cuticle pigmentation + 0
        eye pigment precursor transport 0
        eye pigmentation + 6
        negative regulation of developmental pigmentation + 2
        pigment cell differentiation + 40
        pigment metabolic process involved in developmental pigmentation + 1
        positive regulation of developmental pigmentation + 8
        regulation of developmental pigmentation + 14
        sex-specific pigmentation + 0
paths to the root