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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA 5'-UTR binding
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Accession:GO:0048027 term browser browse the term
Definition:Binding to an mRNA molecule at its 5' untranslated region.


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mRNA 5'-UTR binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 IDA RGD PMID:9092825 RGD:1642740 NCBI chr 5:60,055,895...60,111,920
Ensembl chr 5:60,055,866...60,112,600 		JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr 2:84,302,621...84,313,773
Ensembl chr 2:84,302,623...84,313,779 		JBrowse link
G Celf1 CUGBP, Elav-like family member 1 enables ISO (PMID:32245946) RGD PMID:32245946 NCBI chr 3:97,380,407...97,455,253
Ensembl chr 3:97,380,424...97,452,791 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked enables ISO (PMID:22872150) RGD PMID:22872150 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:12,152,346...12,165,983 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables ISO
ISS
IEA 		(PMID:26489465)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:26489465 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:149,006,089...149,044,191 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISO
ISS
IEA 		(PMID:19166269)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:19166269 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:152,284,841...152,322,675 		JBrowse link
G Gnl3 G protein nucleolar 3 enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr16:6,213,844...6,220,029
Ensembl chr16:6,213,871...6,219,845 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107 		RGD
Ensembl		 PMID:9891060 GO_REF:0000107 NCBI chr10:81,405,021...81,447,814
Ensembl chr10:81,404,797...81,447,846 		JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107
GO_REF:0000117
(PMID:25863250) 		RGD
Ensembl
UniProt		 PMID:9891060 PMID:25863250 GO_REF:0000107 GO_REF:0000117 NCBI chr11:92,378,908...92,478,893
Ensembl chr11:92,378,908...92,478,867 		JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107 		RGD
Ensembl		 PMID:9891060 GO_REF:0000107 NCBI chr 4:79,391,367...79,525,923
Ensembl chr 4:79,393,067...79,525,730 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator enables ISO
IEA 		(PMID:24532714), (PMID:25940091), (PMID:26206669), (PMID:28379136), (PMID:28673543)
GO_REF:0000107 		RGD
Ensembl		 PMID:24532714 PMID:25940091 PMID:26206669 PMID:28379136 PMID:28673543 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,691,600...42,746,816 		JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator enables ISO
IEA 		(PMID:20603131), (PMID:21746880), (PMID:22190748)
GO_REF:0000107 		RGD
Ensembl		 PMID:20603131 PMID:21746880 PMID:22190748 GO_REF:0000107 NCBI chr 8:70,079,753...70,101,175
Ensembl chr 8:70,079,647...70,101,198 		JBrowse link
G Myh10 myosin heavy chain 10 enables ISO
IEA 		(PMID:20603131)
GO_REF:0000107 		RGD
Ensembl		 PMID:20603131 GO_REF:0000107 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,893,166...54,024,036 		JBrowse link
G Ncl nucleolin enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:94,446,682...94,456,083 		JBrowse link
G Rara retinoic acid receptor, alpha IDA RGD PMID:19073915 RGD:2314253 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:84,389,622...84,425,160 		JBrowse link
G Rpl26 ribosomal protein L26 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:54,109,692...54,112,822
Ensembl chr10:54,109,362...54,112,822 		JBrowse link
G Rpl41 ribosomal protein L41 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 7:1,562,417...1,563,497 JBrowse link
G Rpl5 ribosomal protein L5 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr14:1,988,792...1,995,236
Ensembl chr14:1,988,793...1,995,225 		JBrowse link
G Rps13 ribosomal protein S13 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 1:180,007,230...180,009,660
Ensembl chr 1:180,002,471...180,009,660 		JBrowse link
G Rps14 ribosomal protein S14 enables ISO (PMID:7867928) RGD PMID:7867928 NCBI chr18:56,492,010...56,503,092
Ensembl chr18:56,498,245...56,503,091 		JBrowse link
G Rps3a ribosomal protein S3a enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 2:173,822,673...173,827,042
Ensembl chr 2:173,822,488...173,827,043 		JBrowse link
G Rps7 ribosomal protein S7 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 6:50,994,581...50,999,447 JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:4,931,839...4,943,726
Ensembl chr10:4,904,792...4,946,566 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables ISO (PMID:10995219) RGD PMID:10995219 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,960,434...45,997,326 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:17403780 GO_REF:0000033, RGD:10059417 NCBI chr 8:98,282,358...98,315,412
Ensembl chr 8:98,282,358...98,315,386 		JBrowse link
G Utp23 UTP23, small subunit processome component enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr 7:85,074,713...85,084,766
Ensembl chr 7:85,074,711...85,085,603 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19971
    binding 17406
      nucleic acid binding 3781
        RNA binding 1538
          mRNA binding 596
            mRNA 5'-UTR binding 26
paths to the root