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ONTOLOGY REPORT - ANNOTATIONS


Term:alpha-beta T cell differentiation
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Accession:GO:0046632 term browser browse the term
Definition:The process in which a precursor cell type acquires the specialized features of an alpha-beta T cell. An alpha-beta T cell is a T cell that expresses an alpha-beta T cell receptor complex.
Comment:Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms:exact_synonym: alpha-beta T lymphocyte differentiation
 related_synonym: alpha-beta T cell development



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alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87860 (PMID:18025176) RGD PMID:18025176 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87859 (PMID:18025176) RGD PMID:18025176 NCBI chr13:71,223,902...71,319,770
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Ada adenosine deaminase involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857117 (PMID:11067867), (PMID:12163459), (PMID:16670300)
Ensembl
RGD
PMID:11067867 PMID:12163459 PMID:16670300 GO_REF:0000107 NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Anxa1 annexin A1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20139728)
Ensembl
RGD
PMID:20139728 GO_REF:0000107 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (PMID:12717433) RGD PMID:12717433 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO MGI:3053044|MGI:3663359 (PMID:17210642) RGD PMID:17210642 NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:3711006 (PMID:23334952) RGD PMID:23334952 NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:15855276) RGD PMID:15855276 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:98507 (PMID:9462507) RGD PMID:9462507 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in ISO MGI:4399196 (PMID:27657535) RGD PMID:27657535 NCBI chr17:9,170,405...9,178,814
Ensembl chr17:9,165,269...9,172,536
JBrowse link
G Ptcra pre T-cell antigen receptor alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:38422122)
UniProt
RGD
PMID:38422122 GO_REF:0000024 NCBI chr 9:14,218,907...14,229,141
Ensembl chr 9:14,218,802...14,229,235
JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within ISO MGI:3026635 (PMID:15247480) RGD PMID:15247480 NCBI chr 2:184,698,779...184,723,942
Ensembl chr 2:182,009,286...182,034,907
JBrowse link
G Rpl22 ribosomal protein L22 acts_upstream_of_or_within ISO MGI:3804429 (PMID:17555992) RGD PMID:17555992 NCBI chr 5:168,114,432...168,126,114
Ensembl chr 5:162,833,740...162,843,368
Ensembl chr 7:162,833,740...162,843,368
Ensembl chr 4:162,833,740...162,843,368
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:10981962)
Ensembl
RGD
PMID:10981962 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:96770 (PMID:9462507) RGD PMID:9462507 NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535
JBrowse link
G Zap70 zeta chain of T cell receptor associated protein kinase 70 acts_upstream_of ISO MGI:2677447|MGI:3526403|MGI:99515 (PMID:7630421), (PMID:9208839), (PMID:9275205) RGD PMID:7630421 PMID:9208839 PMID:9275205 NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
JBrowse link
alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in ISO (PMID:25398325) RGD PMID:25398325 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
beta selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in ISO (PMID:25398325) RGD PMID:25398325 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99613 (PMID:9275205)
Ensembl
RGD
PMID:9275205 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Zap70 zeta chain of T cell receptor associated protein kinase 70 acts_upstream_of_or_within ISO MGI:99515 (PMID:9275205) RGD PMID:9275205 NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
JBrowse link
CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO MGI:6098706 (PMID:28169274) RGD PMID:28169274 NCBI chr 1:192,250,580...192,257,347
Ensembl chr 1:182,820,141...182,826,907
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:3711006 (PMID:23334952) RGD PMID:23334952 NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
JBrowse link
G Cd83 CD83 molecule acts_upstream_of ISO MGI:3055293 (PMID:15322158) RGD PMID:15322158 NCBI chr17:21,093,281...21,113,223
Ensembl chr17:20,887,309...20,907,083
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of ISO (PMID:17028180) RGD PMID:17028180 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within ISO MGI:2449947|MGI:4459837 (PMID:20194894) RGD PMID:20194894 NCBI chr 4:77,687,581...77,691,468
Ensembl chr 4:77,682,171...77,691,866
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2448069 (PMID:10926756) RGD PMID:10926756 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:3603176 (PMID:16093716) RGD PMID:16093716 NCBI chr 3:155,244,961...155,254,836
Ensembl chr 3:134,789,182...134,801,636
JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:19047684)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19047684 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:48,774,985...48,788,245
Ensembl chr 6:43,047,658...43,059,699
JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of ISO MGI:3716944 (PMID:16227612) RGD PMID:16227612 NCBI chr  X:132,204,717...132,219,421
Ensembl chr  X:127,326,859...127,341,519
JBrowse link
G Satb1 SATB homeobox 1 acts_upstream_of_or_within ISO MGI:2386676 (PMID:10716941) RGD PMID:10716941 NCBI chr 9:4,916,958...5,010,359
Ensembl chr 9:4,680,920...4,753,251
JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in ISS
ISO
GO_REF:0000024
(PMID:9545226)
UniProt
RGD
PMID:9545226 GO_REF:0000024 NCBI chr17:770,104...776,266
Ensembl chr17:764,309...770,548
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (PMID:18195075) RGD PMID:18195075 NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of
ISO (PMID:22079196)
MGI:1857034|MGI:3696705 (PMID:16275384), (PMID:16301745), (PMID:18573908)
RGD PMID:16275384 PMID:16301745 PMID:18573908 PMID:22079196 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Fut7 fucosyltransferase 7 acts_upstream_of_or_within ISO MGI:2387664 (PMID:18573908) RGD PMID:18573908 NCBI chr 3:28,635,913...28,640,407
Ensembl chr 3:8,239,384...8,242,260
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma acts_upstream_of ISO MGI:1857455 (PMID:16227984) RGD PMID:16227984 NCBI chr  X:66,395,330...66,399,026
Ensembl chr  X:66,392,542...66,399,823
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within ISO MGI:2677822 (PMID:11030619) RGD PMID:11030619 NCBI chr10:47,498,852...47,641,612
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Pla2g2d phospholipase A2, group IID acts_upstream_of_or_within ISO (PMID:19564598) RGD PMID:19564598 NCBI chr 5:156,299,374...156,305,816
Ensembl chr 5:151,018,870...151,022,525
JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tox thymocyte selection-associated high mobility group box involved_in ISO (PMID:18195075) RGD PMID:18195075 NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
CD8-positive, alpha-beta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within ISO MGI:5708707 (PMID:25348153) RGD PMID:25348153 NCBI chr15:98,997,427...99,001,177
Ensembl chr15:98,997,259...99,001,470
JBrowse link
CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within ISO MGI:2449947|MGI:4459837 (PMID:20194894) RGD PMID:20194894 NCBI chr 4:77,687,581...77,691,468
Ensembl chr 4:77,682,171...77,691,866
JBrowse link
G Irf1 interferon regulatory factor 1 acts_upstream_of_or_within ISO MGI:1857205 (PMID:11359801) RGD PMID:11359801 NCBI chr10:38,417,935...38,424,946
Ensembl chr10:37,916,670...37,924,166
JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO MGI:2386448|MGI:5752247 (PMID:25470037) RGD PMID:25470037 NCBI chr  X:17,296,750...17,331,257
Ensembl chr  X:14,626,164...14,659,573
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:3603176 (PMID:16093716) RGD PMID:16093716 NCBI chr 3:155,244,961...155,254,836
Ensembl chr 3:134,789,182...134,801,636
JBrowse link
G Psmb11 proteasome subunit beta 11 acts_upstream_of_or_within ISO MGI:3716870 (PMID:17540904), (PMID:31915251) RGD PMID:17540904 PMID:31915251 NCBI chr15:32,054,747...32,055,666 JBrowse link
G Satb1 SATB homeobox 1 acts_upstream_of_or_within ISO MGI:2386676 (PMID:10716941), (PMID:15814699) RGD PMID:10716941 PMID:15814699 NCBI chr 9:4,916,958...5,010,359
Ensembl chr 9:4,680,920...4,753,251
JBrowse link
G Tnfsf8 TNF superfamily member 8 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3054968 (PMID:16177108)
GO_Central
RGD
PMID:16177108 GO_REF:0000033 NCBI chr 5:82,266,436...82,292,858
Ensembl chr 5:77,251,373...77,277,421
JBrowse link
CD8-positive, alpha-beta T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO
IBA
(PMID:17566017)
(PMID:14605368)
GO_REF:0000033
RGD
GO_Central
PMID:14605368 PMID:17566017 GO_REF:0000033 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (PMID:17277142) RGD PMID:17277142 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2156165 (PMID:8170972)
Ensembl
RGD
PMID:8170972 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (PMID:11850626), (PMID:15078895) RGD PMID:11850626 PMID:15078895 NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
negative regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 involved_in ISO (PMID:19667090) RGD PMID:19667090 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (PMID:19109233) RGD PMID:19109233 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:10981962)
Ensembl
RGD
PMID:10981962 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
negative regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core-binding factor subunit beta involved_in ISO (PMID:18258917) RGD PMID:18258917 NCBI chr19:33,049,162...33,092,752
Ensembl chr19:33,049,172...33,092,751
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:22473704) RGD PMID:22473704 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18258917)
UniProt
RGD
PMID:18258917 GO_REF:0000024 NCBI chr11:45,325,778...45,560,300
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in ISO (PMID:18258917) RGD PMID:18258917 NCBI chr 5:152,644,270...152,702,835
Ensembl chr 5:147,360,994...147,419,156
JBrowse link
negative regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a2 solute carrier family 4 member 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:24515893)
UniProt
RGD
PMID:24515893 GO_REF:0000024 NCBI chr 4:11,628,860...11,646,961
Ensembl chr 4:10,736,425...10,752,965
JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:24880459)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24880459 GO_REF:0000024 GO_REF:0000107 NCBI chr10:5,389,574...5,391,265
Ensembl chr10:4,882,560...4,884,383
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in ISO (PMID:22730529), (PMID:24880459) RGD PMID:22730529 PMID:24880459 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
negative regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in ISO (PMID:24463518) RGD PMID:24463518 NCBI chr 1:207,578,447...207,665,126
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Il4r interleukin 4 receptor acts_upstream_of_or_within ISO MGI:96109 (PMID:16424184) RGD PMID:16424184 NCBI chr 1:189,545,739...189,570,639
Ensembl chr 1:180,115,120...180,139,980
JBrowse link
G Jak3 Janus kinase 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:16020505)
BHF-UCL
RGD
PMID:16020505 GO_REF:0000024 NCBI chr16:18,418,807...18,432,515
Ensembl chr16:18,386,405...18,398,536
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (PMID:9670042) RGD PMID:9670042 NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
JBrowse link
negative regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in ISO (PMID:24463518) RGD PMID:24463518 NCBI chr 1:207,578,447...207,665,126
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Foxp3 forkhead box P3 involved_in ISO (PMID:23169781) RGD PMID:23169781 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Il2 interleukin 2 involved_in ISO RNAcentral:URS000039ED8D_10090 (PMID:25642768) RGD PMID:25642768 NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within ISO (PMID:18792410) RGD PMID:18792410 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Pf4 platelet factor 4 IDA RGD PMID:24986443 RGD:329901907 NCBI chr14:17,582,477...17,583,392
Ensembl chr14:17,298,308...17,299,365
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25282160) RGD PMID:25282160 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in ISO (PMID:25282160) RGD PMID:25282160 NCBI chr 3:41,531,319...41,596,496
Ensembl chr 3:21,110,679...21,179,933
JBrowse link
G Smad7 SMAD family member 7 involved_in IEA
ISO
GO_REF:0000107
(PMID:25642768)
Ensembl
RGD
PMID:25642768 GO_REF:0000107 NCBI chr18:71,263,508...71,291,849
Ensembl chr18:68,988,429...69,016,765
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in ISO (PMID:21151104) RGD PMID:21151104 NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within ISO MGI:3530739 (PMID:23034280) RGD PMID:23034280 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
GO_REF:0000024
(PMID:25282160)
UniProt
RGD
PMID:25282160 GO_REF:0000024 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd69 Cd69 molecule involved_in ISO (PMID:24752896) RGD PMID:24752896 NCBI chr 4:164,411,485...164,419,403
Ensembl chr 4:162,725,446...162,733,542
JBrowse link
G Jak3 Janus kinase 3 involved_in ISO
IEA
(PMID:20696842)
GO_REF:0000107
RGD
Ensembl
PMID:20696842 GO_REF:0000107 NCBI chr16:18,418,807...18,432,515
Ensembl chr16:18,386,405...18,398,536
JBrowse link
G Lgals1 galectin 1 involved_in ISO
IEA
(PMID:24752896)
GO_REF:0000107
RGD
Ensembl
PMID:24752896 GO_REF:0000107 NCBI chr 7:112,365,695...112,368,801
Ensembl chr 7:110,481,392...110,488,345
JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in ISO (PMID:28065600) RGD PMID:28065600 NCBI chr 4:117,098,358...117,114,673
Ensembl chr 4:115,540,685...115,557,466
JBrowse link
G Stat5a signal transducer and activator of transcription 5A involved_in ISO
IEA
(PMID:20696842)
GO_REF:0000107
RGD
Ensembl
PMID:20696842 GO_REF:0000107 NCBI chr10:86,285,859...86,310,187
Ensembl chr10:85,785,537...85,809,866
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in ISO (PMID:21151104) RGD PMID:21151104 NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
JBrowse link
G Tnfsf18 TNF superfamily member 18 involved_in ISO (PMID:24107315) RGD PMID:24107315 NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169
JBrowse link
negative regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17008549)
UniProt
Ensembl
RGD
PMID:17008549 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in ISO (PMID:24463518) RGD PMID:24463518 NCBI chr 1:207,578,447...207,665,126
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Bcl6 BCL6, transcription repressor acts_upstream_of_or_within ISO MGI:96559 (PMID:12594267) RGD PMID:12594267 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within ISO MGI:105367|MGI:2182089 (PMID:16424184) RGD PMID:16424184 NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in ISO (PMID:12242343) RGD PMID:12242343 NCBI chr 6:7,481,039...7,512,644
Ensembl chr 6:7,481,095...7,514,834
JBrowse link
G Zfp35 zinc finger protein 35 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr18:15,268,852...15,284,334
Ensembl chr18:15,268,814...15,285,088
JBrowse link
negative regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:3581675 (PMID:15917799) RGD PMID:15917799 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3696689 (PMID:16223777)
Ensembl
RGD
PMID:16223777 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Cd1d1 CD1d1 molecule involved_in ISO (PMID:9133426) RGD PMID:9133426 NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3521818 (PMID:19620306)
Ensembl
RGD
PMID:19620306 GO_REF:0000107 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Itk IL2-inducible T-cell kinase involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:102960|MGI:2178928 (PMID:18292523)
GO_Central
RGD
PMID:18292523 GO_REF:0000033 NCBI chr10:31,254,667...31,316,004
Ensembl chr10:30,753,344...30,814,685
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:1888378 (PMID:14684827) RGD PMID:14684827 NCBI chr20:28,756,951...28,783,422
Ensembl chr20:28,214,271...28,240,498
JBrowse link
G Txk TXK tyrosine kinase acts_upstream_of_or_within ISO MGI:96621 (PMID:18292523) RGD PMID:18292523 NCBI chr14:35,817,270...35,873,454
Ensembl chr14:35,463,944...35,519,448
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in ISO (PMID:23105140) RGD PMID:23105140 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
G Zfp683 zinc finger protein 683 acts_upstream_of_or_within ISO MGI:4276801 (PMID:22885984) RGD PMID:22885984 NCBI chr 5:146,277,972...146,285,856
Ensembl chr 5:146,278,978...146,285,000
JBrowse link
NK T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kctd9 potassium channel tetramerization domain containing 9 acts_upstream_of_or_within ISO (PMID:31024568) RGD PMID:31024568 NCBI chr15:46,117,211...46,145,258
Ensembl chr15:41,942,381...41,969,862
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (PMID:18195075) RGD PMID:18195075 NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
positive regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857117 (PMID:11067867), (PMID:12163459), (PMID:16670300)
Ensembl
RGD
PMID:11067867 PMID:12163459 PMID:16670300 GO_REF:0000107 NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in ISO (PMID:15855276) RGD PMID:15855276 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (PMID:19109233) RGD PMID:19109233 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B acts_upstream_of_or_within ISO MGI:3039799 (PMID:15064401) RGD PMID:15064401 NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
JBrowse link
G Nkap NFKB activating protein involved_in ISO
ISS
(PMID:19409814)
GO_REF:0000024
RGD
UniProt
PMID:19409814 GO_REF:0000024 NCBI chr  X:116,373,031...116,392,677
Ensembl chr  X:116,372,839...116,394,945
JBrowse link
G Pnp purine nucleoside phosphorylase acts_upstream_of_or_within ISO (PMID:16964310) RGD PMID:16964310 NCBI chr15:26,644,147...26,651,808
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:25398325) RGD PMID:25398325 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:14764698)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14764698 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99613 (PMID:9275205)
Ensembl
RGD
PMID:9275205 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Zap70 zeta chain of T cell receptor associated protein kinase 70 acts_upstream_of_or_within ISO MGI:2677447|MGI:3526403|MGI:99515 (PMID:7630421), (PMID:9208839), (PMID:9275205) RGD PMID:7630421 PMID:9208839 PMID:9275205 NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
JBrowse link
positive regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd83 CD83 molecule acts_upstream_of_or_within ISO MGI:3055293 (PMID:15322158) RGD PMID:15322158 NCBI chr17:21,093,281...21,113,223
Ensembl chr17:20,887,309...20,907,083
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO (PMID:17028180) RGD PMID:17028180 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
ISO
GO_REF:0000024
(PMID:19015308)
UniProt
RGD
PMID:19015308 GO_REF:0000024 NCBI chr 7:136,455,900...136,501,384
Ensembl chr 7:134,577,482...134,622,934
JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within ISO MGI:3716944 (PMID:16227612) RGD PMID:16227612 NCBI chr  X:132,204,717...132,219,421
Ensembl chr  X:127,326,859...127,341,519
JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:24880459)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24880459 GO_REF:0000024 GO_REF:0000107 NCBI chr10:5,389,574...5,391,265
Ensembl chr10:4,882,560...4,884,383
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (PMID:20639485) RGD PMID:20639485 NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in ISO (PMID:24880459) RGD PMID:24880459 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO MGI:1857034|MGI:2654936|MGI:3696705 (PMID:12612578), (PMID:16275384), (PMID:16301745), (PMID:18573908) RGD PMID:12612578 PMID:16275384 PMID:16301745 PMID:18573908 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Gimap5 GTPase, IMAP family member 5 IMP RGD PMID:15778366 RGD:2303772 NCBI chr 4:79,025,151...79,031,917
Ensembl chr 4:77,687,564...77,703,086
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma acts_upstream_of_or_within ISO MGI:1857455 (PMID:16227984) RGD PMID:16227984 NCBI chr  X:66,395,330...66,399,026
Ensembl chr  X:66,392,542...66,399,823
JBrowse link
G Klhl25 kelch-like family member 25 involved_in ISO
ISS
(PMID:34491895)
GO_REF:0000024
RGD
UniProt
PMID:34491895 GO_REF:0000024 NCBI chr 1:129,724,894...129,750,142
Ensembl chr 1:129,722,026...129,750,227
JBrowse link
G RT1-Da RT1 class II, locus Da involved_in ISO (PMID:28467828) RGD PMID:28467828 NCBI chr20:4,515,393...4,520,387
Ensembl chr20:4,512,911...4,518,455
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in ISO (PMID:28467828) RGD PMID:28467828 NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,548,666...4,558,258
JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in ISO (PMID:20209097) RGD PMID:20209097 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:20209097) RGD PMID:20209097 NCBI chr10:64,405,044...64,428,249
Ensembl chr10:63,907,018...63,930,045
JBrowse link
positive regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core-binding factor subunit beta involved_in ISO (PMID:18258917) RGD PMID:18258917 NCBI chr19:33,049,162...33,092,752
Ensembl chr19:33,049,172...33,092,751
JBrowse link
G Lilrb4 leukocyte immunoglobulin like receptor B4 involved_in ISO (PMID:18420485) RGD PMID:18420485 NCBI chr 1:78,847,685...78,853,294
Ensembl chr 1:69,805,250...69,810,660
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
ISO
GO_REF:0000024
(PMID:19015308)
UniProt
RGD
PMID:19015308 GO_REF:0000024 NCBI chr 7:136,455,900...136,501,384
Ensembl chr 7:134,577,482...134,622,934
JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18258917)
UniProt
RGD
PMID:18258917 GO_REF:0000024 NCBI chr11:45,325,778...45,560,300
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in ISO (PMID:18258917) RGD PMID:18258917 NCBI chr 5:152,644,270...152,702,835
Ensembl chr 5:147,360,994...147,419,156
JBrowse link
positive regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1856989 (PMID:14557411) RGD PMID:14557411 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 acts_upstream_of_or_within ISO MGI:1856083 (PMID:14557411) RGD PMID:14557411 NCBI chr 7:9,620,909...9,656,350
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Cd1d1 CD1d1 molecule acts_upstream_of_or_within ISO MGI:2180711|MGI:2180713 (PMID:10201995), (PMID:9133426) RGD PMID:9133426 PMID:10201995 NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2183502|MGI:2386448 (PMID:16973387)
Ensembl
RGD
PMID:16973387 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
positive regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17008549)
UniProt
Ensembl
RGD
PMID:17008549 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:61,759,220...61,761,164
Ensembl chr 5:56,963,364...56,965,308
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within ISO MGI:105367|MGI:2182089 (PMID:16424184) RGD PMID:16424184 NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within ISO MGI:2446070 (PMID:11894097) RGD PMID:11894097 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in ISO (PMID:12242343) RGD PMID:12242343 NCBI chr 6:7,481,039...7,512,644
Ensembl chr 6:7,481,095...7,514,834
JBrowse link
positive regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malt1 MALT1 paracaspase involved_in ISO (PMID:25282160) RGD PMID:25282160 NCBI chr18:61,212,290...61,266,272
Ensembl chr18:58,942,299...58,994,260
JBrowse link
G Mir326 microRNA 326 acts_upstream_of_or_within ISO (PMID:19838199) RGD PMID:19838199 NCBI chr 1:163,266,165...163,266,259
Ensembl chr 1:153,854,029...153,854,123
JBrowse link
G Nfkbid NFKB inhibitor delta involved_in ISO (PMID:25282160) RGD PMID:25282160 NCBI chr 1:85,679,353...85,690,415
Ensembl chr 1:85,680,861...85,690,447
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO (PMID:25282160) RGD PMID:25282160 NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in ISO (PMID:26098997) RGD PMID:26098997 NCBI chr10:44,826,299...44,853,373
Ensembl chr10:44,328,566...44,352,811
JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd2 bromodomain containing 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28262505)
UniProt
RGD
PMID:28262505 GO_REF:0000024 NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Brd4 bromodomain containing 4 involved_in ISO (PMID:28262505) RGD PMID:28262505 NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:28262505) RGD PMID:28262505 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Il23a interleukin 23 subunit alpha involved_in IBA
ISO
GO_REF:0000033
(PMID:19501566)
GO_Central
RGD
PMID:19501566 GO_REF:0000033 NCBI chr 7:1,306,320...1,308,434
Ensembl chr 7:721,809...723,923
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:36171294)
UniProt
Ensembl
RGD
PMID:36171294 GO_REF:0000024 GO_REF:0000107 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109
JBrowse link
positive regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il18 interleukin 18 involved_in IEA
ISO
GO_REF:0000107
(PMID:12829194)
Ensembl
RGD
PMID:12829194 GO_REF:0000107 NCBI chr 8:59,802,072...59,829,275
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Il4r interleukin 4 receptor acts_upstream_of_or_within ISO MGI:96109 (PMID:16424184) RGD PMID:16424184 NCBI chr 1:189,545,739...189,570,639
Ensembl chr 1:180,115,120...180,139,980
JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:12594267) RGD PMID:12594267 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in ISO (PMID:26098997) RGD PMID:26098997 NCBI chr10:44,826,299...44,853,373
Ensembl chr10:44,328,566...44,352,811
JBrowse link
G Prkcz protein kinase C, zeta involved_in ISS
ISO
GO_REF:0000024
(PMID:15987782)
UniProt
RGD
PMID:15987782 GO_REF:0000024 NCBI chr 5:171,101,774...171,212,694
Ensembl chr 5:165,819,466...165,930,367
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:18416830) RGD PMID:18416830 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (PMID:18354165) RGD PMID:18354165 NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
JBrowse link
positive regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shb SH2 domain containing adaptor protein B acts_upstream_of_or_within ISO MGI:3721903 (PMID:24645804) RGD PMID:24645804 NCBI chr 5:64,473,694...64,581,072
Ensembl chr 5:59,678,216...59,785,538
JBrowse link
regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (PMID:27010503) RGD PMID:27010503 NCBI chr16:18,076,413...18,082,356
Ensembl chr16:18,076,492...18,083,729
JBrowse link
regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3rf1 SH3 domain containing ring finger 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27084103)
UniProt
RGD
PMID:27084103 GO_REF:0000024 NCBI chr16:28,735,522...28,901,261
Ensembl chr16:28,735,440...28,901,644
JBrowse link
regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnk18 potassium two pore domain channel subfamily K member 18 involved_in ISS
ISO
GO_REF:0000024
(PMID:34702947)
UniProt
RGD
PMID:34702947 GO_REF:0000024 NCBI chr 1:258,374,671...258,388,945
Ensembl chr 1:258,374,671...258,388,945
JBrowse link
regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within ISO MGI:3817628 (PMID:18776904) RGD PMID:18776904 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR/SET domain 1 involved_in ISO (PMID:27102484) RGD PMID:27102484 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488
JBrowse link
G Zfp683 zinc finger protein 683 involved_in ISO (PMID:27102484) RGD PMID:27102484 NCBI chr 5:146,277,972...146,285,856
Ensembl chr 5:146,278,978...146,285,000
JBrowse link
regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27 interleukin 27 involved_in ISO
IBA
(PMID:12734330)
GO_REF:0000033
RGD
GO_Central
PMID:12734330 GO_REF:0000033 NCBI chr 1:190,603,684...190,609,292
Ensembl chr 1:181,173,372...181,178,582
JBrowse link
regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 C-C motif chemokine ligand 20 NOT|involved_in ISO (PMID:19050256) RGD PMID:19050256 NCBI chr 9:91,837,139...91,839,736
Ensembl chr 9:84,388,904...84,391,629
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 NOT|involved_in ISO (PMID:19050256) RGD PMID:19050256 NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
JBrowse link
G Mir301a microRNA 301a acts_upstream_of_or_within ISO (PMID:22517757) RGD PMID:22517757 NCBI chr10:72,422,599...72,422,698
Ensembl chr10:71,925,336...71,925,435
JBrowse link
regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:3487291 (PMID:18776904) RGD PMID:18776904 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Il12rb2 interleukin 12 receptor subunit beta 2 NAS RGD PMID:10651948 RGD:1331512 NCBI chr 4:97,756,089...97,844,937
Ensembl chr 4:96,426,842...96,515,289
JBrowse link
G RT1-Da RT1 class II, locus Da involved_in ISO (PMID:15322540) RGD PMID:15322540 NCBI chr20:4,515,393...4,520,387
Ensembl chr20:4,512,911...4,518,455
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in ISO (PMID:15322540) RGD PMID:15322540 NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,548,666...4,558,258
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within ISO MGI:3817628 (PMID:18776904) RGD PMID:18776904 NCBI chr 2:177,093,569...177,111,894
Ensembl chr 2:174,797,453...174,814,236
JBrowse link
T follicular helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in ISO (PMID:24463518) RGD PMID:24463518 NCBI chr 1:207,578,447...207,665,126
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (PMID:24859450) RGD PMID:24859450 NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
JBrowse link
G Gpr183 G protein-coupled receptor 183 involved_in ISS
ISO
GO_REF:0000024
(PMID:27147029)
UniProt
RGD
PMID:27147029 GO_REF:0000024 NCBI chr15:105,445,129...105,457,192
Ensembl chr15:99,036,367...99,050,559
JBrowse link
G Icos inducible T-cell co-stimulator involved_in ISO
IEA
(PMID:27135603)
GO_REF:0000107
RGD
Ensembl
PMID:27135603 GO_REF:0000107 NCBI chr 9:62,368,075...62,406,900
Ensembl chr 9:62,383,832...62,405,672
JBrowse link
G Icoslg inducible T-cell co-stimulator ligand involved_in ISO (PMID:24411167) RGD PMID:24411167 NCBI chr20:10,600,078...10,610,385
Ensembl chr20:10,600,420...10,610,703
JBrowse link
G Il21 interleukin 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:23045607)
UniProt
RGD
PMID:23045607 GO_REF:0000024 NCBI chr 2:122,045,240...122,055,142
Ensembl chr 2:120,119,444...120,126,996
JBrowse link
G Il6 interleukin 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:23045607)
UniProt
RGD
PMID:23045607 GO_REF:0000024 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in ISO
IEA
(PMID:30523347)
GO_REF:0000107
RGD
Ensembl
PMID:30523347 GO_REF:0000107 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:32,882,032...32,963,631
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:2442789 (PMID:23583643) RGD PMID:23583643 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (PMID:23583643) RGD PMID:23583643 NCBI chr 3:41,531,319...41,596,496
Ensembl chr 3:21,110,679...21,179,933
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (PMID:27135603) RGD PMID:27135603 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracr2a calcium release activated channel regulator 2A involved_in ISO (PMID:29987160) RGD PMID:29987160 NCBI chr 4:160,428,987...160,517,427
Ensembl chr 4:160,408,077...160,518,107
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of ISO MGI:105367|MGI:2182089 (PMID:16424184) RGD PMID:16424184 NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:15944249) RGD PMID:15944249 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Il18r1 interleukin 18 receptor 1 acts_upstream_of_or_within ISO MGI:2136765 (PMID:10227969) RGD PMID:10227969 NCBI chr 9:50,223,274...50,257,370
Ensembl chr 9:42,727,869...42,760,715
JBrowse link
G Il4r interleukin 4 receptor acts_upstream_of ISO MGI:96109 (PMID:16424184) RGD PMID:16424184 NCBI chr 1:189,545,739...189,570,639
Ensembl chr 1:180,115,120...180,139,980
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:18579517)
Ensembl
RGD
PMID:18579517 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (PMID:31182790) RGD PMID:31182790 NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit acts_upstream_of_or_within ISO MGI:2179545 (PMID:16081776) RGD PMID:16081776 NCBI chr 1:88,385,717...88,413,380
Ensembl chr 1:79,257,725...79,285,507
JBrowse link
G Sema4a semaphorin 4A involved_in ISO (PMID:15780988) RGD PMID:15780988 NCBI chr 2:176,194,248...176,215,752
Ensembl chr 2:173,896,439...173,914,442
JBrowse link
G Stat4 signal transducer and activator of transcription 4 involved_in ISO (PMID:14688310) RGD PMID:14688310 NCBI chr 9:56,964,617...57,080,523
Ensembl chr 9:49,419,340...49,588,540
JBrowse link
G Tmem98 transmembrane protein 98 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25946230)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25946230 GO_REF:0000024 GO_REF:0000107 NCBI chr10:66,293,895...66,304,806
Ensembl chr10:65,796,145...65,807,079
JBrowse link
T-helper 1 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4 interleukin 4 acts_upstream_of_or_within ISO MGI:103034 (PMID:20706986) RGD PMID:20706986 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA
ISO
GO_REF:0000107
(PMID:26410627)
Ensembl
RGD
PMID:26410627 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Spn sialophorin involved_in ISO
ISS
(PMID:18036228)
GO_REF:0000024
RGD
UniProt
PMID:18036228 GO_REF:0000024 NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
JBrowse link
G Stat6 signal transducer and activator of transcription 6 acts_upstream_of_or_within ISO MGI:96556 (PMID:20706986) RGD PMID:20706986 NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in ISO (PMID:10761931) RGD PMID:10761931 NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
JBrowse link
T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:20421391), (PMID:21572431)
UniProt
RGD
PMID:20421391 PMID:21572431 GO_REF:0000024 NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:23241884) RGD PMID:23241884 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (PMID:20383124) RGD PMID:20383124 NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Rora RAR-related orphan receptor A involved_in ISO (PMID:18164222) RGD PMID:18164222 NCBI chr 8:78,182,710...78,915,730
Ensembl chr 8:69,301,733...70,025,931
JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within
involved_in
ISO (PMID:18792410)
(PMID:16990136), (PMID:18164222)
MGI:2386114 (PMID:20383124)
RGD PMID:16990136 PMID:18164222 PMID:18792410 PMID:20383124 NCBI chr 2:184,698,779...184,723,942
Ensembl chr 2:182,009,286...182,034,907
JBrowse link
T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:19578362), (PMID:22983707)
UniProt
RGD
PMID:19578362 PMID:22983707 GO_REF:0000024 NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
JBrowse link
G Il6 interleukin 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:16990136), (PMID:27893700)
UniProt
RGD
PMID:16990136 PMID:27893700 GO_REF:0000024 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Il6r interleukin 6 receptor involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:27893700)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27893700 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:177,582,020...177,646,705
Ensembl chr 2:175,298,686...175,347,536
JBrowse link
G Irf4 interferon regulatory factor 4 involved_in ISO (PMID:22983707) RGD PMID:22983707 NCBI chr17:33,930,460...33,948,842
Ensembl chr17:33,721,811...33,740,070
JBrowse link
G Ly9 lymphocyte antigen 9 involved_in ISO (PMID:22184727) RGD PMID:22184727 NCBI chr13:86,610,762...86,633,314
Ensembl chr13:84,079,458...84,100,823
JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO MGI:2386448|MGI:5752247 (PMID:25470037) RGD PMID:25470037 NCBI chr  X:17,296,750...17,331,257
Ensembl chr  X:14,626,164...14,659,573
JBrowse link
G Slamf6 SLAM family member 6 involved_in ISO (PMID:22184727) RGD PMID:22184727 NCBI chr13:86,916,956...86,937,697
Ensembl chr13:84,383,742...84,405,300
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:28065600)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28065600 GO_REF:0000024 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
JBrowse link
T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:20421391), (PMID:21572431)
UniProt
RGD
PMID:20421391 PMID:21572431 GO_REF:0000024 NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO MGI:2158443 (PMID:16081776) RGD PMID:16081776 NCBI chr 1:88,599,321...88,613,555
Ensembl chr 1:79,471,369...79,485,607
JBrowse link
G Bcl6 BCL6, transcription repressor acts_upstream_of ISO MGI:96559 (PMID:12594267) RGD PMID:12594267 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
ISO (PMID:20484083)
(PMID:20706986)
RGD PMID:20484083 PMID:20706986 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of ISO MGI:105367|MGI:2182089 (PMID:16424184) RGD PMID:16424184 NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750
JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within ISO (PMID:20706986) RGD PMID:20706986 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Il4r interleukin 4 receptor acts_upstream_of ISO MGI:96109 (PMID:16424184) RGD PMID:16424184 NCBI chr 1:189,545,739...189,570,639
Ensembl chr 1:180,115,120...180,139,980
JBrowse link
G Il6 interleukin 6 acts_upstream_of ISO (PMID:12594267) RGD PMID:12594267 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 8:54,013,547...54,089,219
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Men1 menin 1 involved_in ISO
IEA
(PMID:20484083)
GO_REF:0000107
RGD
Ensembl
PMID:20484083 GO_REF:0000107 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:20484083) RGD PMID:20484083 NCBI chr 1:17,759,309...17,793,306
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856466 (PMID:8434133) RGD PMID:8434133 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Il12b interleukin 12B involved_in ISO (PMID:1673147) RGD PMID:1673147 NCBI chr10:29,390,300...29,405,194
Ensembl chr10:28,893,008...28,902,903
JBrowse link
G Pdp2 pyruvate dehydrogenase phosphatase catalytic subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:392,858...400,529
Ensembl chr19:386,406...394,074
JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19465928)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19465928 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:56,061,699...56,074,594
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
G Rorc RAR-related orphan receptor C involved_in ISO (PMID:14691482) RGD PMID:14691482 NCBI chr 2:184,698,779...184,723,942
Ensembl chr 2:182,009,286...182,034,907
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    immune system process 3120
      leukocyte activation 1075
        lymphocyte activation 869
          T cell activation 619
            T cell differentiation 335
              alpha-beta T cell differentiation 151
                CD4-positive, alpha-beta T cell differentiation + 111
                CD8-positive, alpha-beta T cell differentiation + 20
                NK T cell differentiation + 15
                alpha-beta T cell differentiation involved in immune response + 88
                alpha-beta T cell lineage commitment + 29
                alpha-beta intraepithelial T cell differentiation + 1
                beta selection 3
                negative regulation of alpha-beta T cell differentiation + 33
                positive regulation of alpha-beta T cell differentiation + 54
                regulation of alpha-beta T cell differentiation + 84
Path 2
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      cellular developmental process 4831
        cell differentiation 4830
          cell development 3338
            hemopoiesis 1083
              leukocyte differentiation 688
                mononuclear cell differentiation 552
                  lymphocyte differentiation 449
                    T cell differentiation 335
                      alpha-beta T cell differentiation 151
                        CD4-positive, alpha-beta T cell differentiation + 111
                        CD8-positive, alpha-beta T cell differentiation + 20
                        NK T cell differentiation + 15
                        alpha-beta T cell differentiation involved in immune response + 88
                        alpha-beta T cell lineage commitment + 29
                        alpha-beta intraepithelial T cell differentiation + 1
                        beta selection 3
                        negative regulation of alpha-beta T cell differentiation + 33
                        positive regulation of alpha-beta T cell differentiation + 54
                        regulation of alpha-beta T cell differentiation + 84
paths to the root