Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleobase catabolic process
go back to main search page
Accession:GO:0046113 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
Synonyms:exact_synonym: nucleobase breakdown;   nucleobase catabolism;   nucleobase degradation


show annotations for term's descendants           Sort by:
guanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in IEA
ISO		 GO_REF:0000041
GO_REF:0000002
(PMID:8064675)
GO_REF:0000104		 UniProt
InterPro
RGD		 PMID:8064675 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 1:228,333,401...228,408,901
Ensembl chr 1:218,906,815...218,982,416 		JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923 		JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:195,905,763...195,909,159
Ensembl chr 1:195,905,763...195,909,159 		JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA
ISO
IEA		 PMID:3443108
(PMID:1590774)
GO_REF:0000107		 RGD
Ensembl		 PMID:1590774 PMID:3443108 GO_REF:0000107, RGD:42721989 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268 		JBrowse link
hypoxanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923 		JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:195,905,763...195,909,159
Ensembl chr 1:195,905,763...195,909,159 		JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA
ISO
IEA		 (PMID:1590774), (PMID:30936145)
GO_REF:0000107
PMID:3443108
(PMID:1619276)		 RGD
Ensembl		 PMID:1590774 PMID:1619276 PMID:30936145 PMID:232638 PMID:3443108 GO_REF:0000107, RGD:13210503, RGD:42721989 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268 		JBrowse link
purine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:11988088)		 Ensembl
RGD		 PMID:11988088 GO_REF:0000107 NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Uox urate oxidase involved_in TAS
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3182808 GO_REF:0000033, RGD:730101 NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029 		JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:73,509,933...73,556,192
Ensembl chr14:73,509,933...73,556,177 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in
acts_upstream_of_or_within		 IDA
IEA
ISO		 GO_REF:0000107
(PMID:12651209)
(PMID:11988088)		 Ensembl
RGD		 PMID:11988088 PMID:12651209 PMID:1629785 GO_REF:0000107, RGD:1599794 NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO
IEA
IBA		 (PMID:9718352)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:9718352 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,181,041...45,287,065
Ensembl chr15:41,005,551...41,111,829 		JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:35,625,357...35,731,152
Ensembl chr18:35,377,181...35,480,157 		JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,312,646...203,328,523
Ensembl chr 1:193,883,106...193,898,914 		JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:31,295,035...31,379,348
Ensembl chr 6:25,575,104...25,659,422 		JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 involved_in IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:23835272)		 GO_Central
Ensembl
RGD		 PMID:23835272 PMID:2768248 GO_REF:0000033 GO_REF:0000107, RGD:1599052 NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:10410956)		 Ensembl
GO_Central
RGD		 PMID:10410956 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
IBA
ISO
ISS		 GO_REF:0000107
GO_REF:0000033
(PMID:1512248), (PMID:18075467)
GO_REF:0000024		 Ensembl
GO_Central
RGD
UniProt		 PMID:1512248 PMID:18075467 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
IDA
ISO		 GO_REF:0000107
PMID:8307005
(PMID:10410956), (PMID:18075467)		 Ensembl
RGD		 PMID:10410956 PMID:18075467 PMID:8307005 GO_REF:0000107, RGD:1624990 NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
xanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) RGD PMID:16462750 NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923 		JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:195,905,763...195,909,159
Ensembl chr 1:195,905,763...195,909,159 		JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA
IEA
ISS
ISO
IBA		 PMID:3443108
GO_REF:0000107
GO_REF:0000024
PMID:15878860
(PMID:17301077), (PMID:8670112)
(PMID:1590774)
GO_REF:0000033		 Ensembl
UniProt
RGD
GO_Central		 PMID:1590774 PMID:8670112 PMID:17301077 PMID:3443108 PMID:15878860 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:42721989, RGD:8553512 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        catabolic process 2956
          nucleobase catabolic process 13
            purine nucleobase catabolic process + 6
            pyrimidine nucleobase catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        primary metabolic process 10745
          nucleobase-containing compound metabolic process 5888
            nucleobase-containing small molecule metabolic process 723
              nucleobase metabolic process 45
                nucleobase catabolic process 13
                  purine nucleobase catabolic process + 6
                  pyrimidine nucleobase catabolic process + 8
paths to the root