Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytic vesicle
go back to main search page
Accession:GO:0045335 term browser browse the term
Definition:A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
Synonyms:exact_synonym: phagosome
 xref: Wikipedia:Phagosome
 never_in_taxon: NCBITaxon:4751 ! Fungi



show annotations for term's descendants           Sort by:
phagocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 located_in ISO
IEA
(PMID:15469992)
GO_REF:0000107
RGD
Ensembl
PMID:15469992 GO_REF:0000107 NCBI chr 5:72,473,676...72,596,563
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Actg1 actin, gamma 1 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:106,118,106...106,120,951
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 located_in ISO
IEA
(PMID:22493499)
GO_REF:0000107
RGD
Ensembl
PMID:22493499 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Anxa11 annexin A11 located_in ISO (PMID:9188810) RGD PMID:9188810 NCBI chr16:1,419,627...1,464,590
Ensembl chr16:1,410,756...1,457,797
JBrowse link
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:2,125,234...2,173,457
Ensembl chr16:2,121,255...2,166,692
JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Atg14 autophagy related 14 located_in ISO
IEA
(PMID:22493499)
GO_REF:0000107
RGD
Ensembl
PMID:22493499 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Becn1 beclin 1 located_in ISO
IEA
(PMID:22493499)
GO_REF:0000107
RGD
Ensembl
PMID:22493499 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Capg capping actin protein, gelsolin like located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 4:106,152,912...106,170,010
Ensembl chr 4:104,594,753...104,611,856
JBrowse link
G Cdc42 cell division cycle 42 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Cdc42ep2 CDC42 effector protein 2 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:212,631,317...212,640,231
Ensembl chr 1:203,201,873...203,210,897
JBrowse link
G Cdc42ep4 CDC42 effector protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:99,271,750...99,298,551
Ensembl chr10:98,772,495...98,797,695
JBrowse link
G Clcn3 chloride voltage-gated channel 3 located_in ISO (PMID:16522634) RGD PMID:16522634 NCBI chr16:29,127,152...29,200,133
Ensembl chr16:29,127,419...29,200,119
JBrowse link
G Coro1a coronin 1A located_in ISO
IEA
(PMID:17442961)
GO_REF:0000107
RGD
Ensembl
PMID:17442961 GO_REF:0000107 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Ctss cathepsin S located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
(PMID:30612035)
UniProt
RGD
PMID:30612035 GO_REF:0000024 GO_REF:0000044 NCBI chr 2:185,775,316...185,803,440
Ensembl chr 2:183,086,437...183,114,483
JBrowse link
G Cybb cytochrome b-245 beta chain located_in ISO
IEA
(PMID:23303671)
GO_REF:0000107
RGD
Ensembl
PMID:23303671 GO_REF:0000107 NCBI chr  X:16,030,596...16,065,065
Ensembl chr  X:13,359,430...13,392,586
JBrowse link
G Evl Enah/Vasp-like located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 6:133,238,547...133,358,730
Ensembl chr 6:127,474,543...127,594,344
JBrowse link
G Flnb filamin B located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr15:19,392,212...19,525,278
Ensembl chr15:16,962,003...17,095,006
JBrowse link
G Fmnl1 formin-like 1 located_in ISO (PMID:21148482) RGD PMID:21148482 NCBI chr10:88,615,290...88,643,411
Ensembl chr10:88,116,009...88,143,357
JBrowse link
G Gsn gelsolin located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr 3:38,982,605...39,035,849
Ensembl chr 3:18,585,172...18,638,402
JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 IDA RGD PMID:18414680 RGD:2316597 NCBI chr10:31,619,914...31,652,955
Ensembl chr10:31,119,088...31,151,698
JBrowse link
G Irgm immunity-related GTPase M located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Kif16b kinesin family member 16B located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 3:150,428,233...150,707,755
Ensembl chr 3:129,974,800...130,254,019
JBrowse link
G Kif5b kinesin family member 5B located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr17:56,185,386...56,222,990
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in ISO
IEA
(PMID:22190682)
GO_REF:0000107
RGD
Ensembl
PMID:22190682 GO_REF:0000107 NCBI chr16:83,058,131...83,082,843
Ensembl chr16:76,355,984...76,381,883
JBrowse link
G Mpeg1 macrophage expressed 1 located_in ISS
ISO
GO_REF:0000024
(PMID:26402460)
UniProt
RGD
PMID:26402460 GO_REF:0000024 NCBI chr 1:218,876,848...218,881,364
Ensembl chr 1:209,452,133...209,458,855
JBrowse link
G Mtor mechanistic target of rapamycin kinase located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
GO_REF:0000107
(PMID:27623384)
UniProt
Ensembl
RGD
PMID:27623384 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Myh9 myosin, heavy chain 9 located_in IDA RGD PMID:19117932 RGD:6902913 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457
JBrowse link
G Myo18a myosin XVIIIa located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:63,152,303...63,253,543
Ensembl chr10:62,654,281...62,755,468
JBrowse link
G Myo1c myosin 1C located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr10:60,996,642...61,019,022
Ensembl chr10:60,498,280...60,520,752
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 located_in ISO
IEA
(PMID:31649195)
GO_REF:0000107
RGD
Ensembl
PMID:31649195 GO_REF:0000107 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 located_in ISO
IEA
(PMID:31649195)
GO_REF:0000107
RGD
Ensembl
PMID:31649195 GO_REF:0000107 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 located_in IEA
ISO
GO_REF:0000107
(PMID:22493499)
Ensembl
RGD
PMID:22493499 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pla2g5 phospholipase A2, group V located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
G Pld4 phospholipase D family, member 4 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:22102906)
GO_Central
RGD
PMID:22102906 GO_REF:0000033 NCBI chr 6:137,639,948...137,647,462
Ensembl chr 6:131,818,860...131,826,376
JBrowse link
G Rab11a RAB11a, member RAS oncogene family located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
GO_REF:0000107
(PMID:21255211)
UniProt
Ensembl
RGD
PMID:21255211 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:74,118,922...74,141,760
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in ISO
ISS
(PMID:21255211)
GO_REF:0000024
RGD
UniProt
PMID:21255211 GO_REF:0000024 NCBI chr 7:15,223,613...15,236,754
Ensembl chr 7:14,521,368...14,534,593
JBrowse link
G Rab11fip5 RAB11 family interacting protein 5 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:19144319)
GO_Central
RGD
PMID:19144319 GO_REF:0000033 NCBI chr 4:119,428,766...119,466,277
Ensembl chr 4:117,871,308...117,908,741
JBrowse link
G Rab12 RAB12, member RAS oncogene family located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 9:113,927,119...113,953,722
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in
is_active_in
ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000002
GO_REF:0000033
GO_REF:0000044
(PMID:21255211)
UniProt
InterPro
GO_Central
RGD
PMID:21255211 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 3:38,899,430...38,920,572
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
G Rab20 RAB20, member RAS oncogene family located_in ISO
IEA
(PMID:21255211)
GO_REF:0000107
(PMID:19144319)
RGD
Ensembl
PMID:19144319 PMID:21255211 GO_REF:0000107 NCBI chr16:84,721,427...84,745,610
Ensembl chr16:78,019,337...78,043,529
JBrowse link
G Rab22a RAB22A, member RAS oncogene family located_in ISO
IEA
(PMID:21255211)
GO_REF:0000107
RGD
Ensembl
PMID:21255211 GO_REF:0000107 NCBI chr 3:162,459,727...162,506,129
Ensembl chr 3:162,459,726...162,506,137
JBrowse link
G Rab23 RAB23, member RAS oncogene family located_in ISO
IEA
(PMID:21255211)
GO_REF:0000107
RGD
Ensembl
PMID:21255211 GO_REF:0000107 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927
JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISO
IEA
ISS
(PMID:21255211)
GO_REF:0000107
GO_REF:0000044
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 9:112,693,596...112,828,104
Ensembl chr 9:105,246,709...105,381,253
JBrowse link
G Rab32 RAB32, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in
is_active_in
ISO
IEA
IBA
ISS
(PMID:21255211)
GO_REF:0000044
(PMID:23197834)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
UniProt
GO_Central
Ensembl
PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Rab38 RAB38, member RAS oncogene family located_in ISO
IEA
(PMID:21255211)
GO_REF:0000107
RGD
Ensembl
PMID:21255211 GO_REF:0000107 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Rab39a RAB39A, member RAS oncogene family located_in ISO
IEA
(PMID:21255211)
GO_REF:0000107
RGD
Ensembl
PMID:21255211 GO_REF:0000107 NCBI chr 8:62,984,434...63,002,053
Ensembl chr 8:54,088,129...54,106,483
JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in ISO
IEA
ISS
(PMID:21255211)
GO_REF:0000044
(PMID:19144319)
GO_REF:0000024
RGD
UniProt
PMID:19144319 PMID:21255211 GO_REF:0000024 GO_REF:0000044 NCBI chr 4:121,806,992...121,826,694
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:22493499), (PMID:25568335)
UniProt
RGD
PMID:22493499 PMID:25568335 GO_REF:0000024 NCBI chr 9:6,720,057...6,749,456
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:72,544,798...72,546,910
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in
is_active_in
ISO
IEA
IBA
ISS
(PMID:21255211)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
RGD
Ensembl
GO_Central
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab7b Rab7b, member RAS oncogene family located_in
is_active_in
ISO
IEA
IBA
(PMID:21255211)
GO_REF:0000107
(PMID:19144319)
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:19144319 PMID:21255211 GO_REF:0000033 GO_REF:0000107 NCBI chr13:45,673,396...45,699,798
Ensembl chr13:43,121,226...43,147,581
JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in ISO
IEA
ISS
(PMID:21255211)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000107 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21255211)
UniProt
Ensembl
RGD
PMID:21255211 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:76,340,106...76,417,638
Ensembl chr 8:67,458,923...67,536,384
JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in
is_active_in
ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000044
GO_REF:0000033
(PMID:21255211)
UniProt
GO_Central
RGD
PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr  X:27,955,552...28,009,870
Ensembl chr  X:27,952,204...28,001,622
JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in
is_active_in
ISO
IEA
IBA
(PMID:21255211)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:21255211 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:105,013,178...105,023,872
Ensembl chr  X:100,220,894...100,231,701
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IDA RGD PMID:18832707 RGD:9835043 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:193,208,635...193,286,501
JBrowse link
G Scimp SLP adaptor and CSK interacting membrane protein located_in ISO (PMID:27288407) RGD PMID:27288407 NCBI chr10:56,006,243...56,026,357
Ensembl chr10:55,507,519...55,528,171
JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 located_in ISO
IEA
(PMID:22493499)
GO_REF:0000107
RGD
Ensembl
PMID:22493499 GO_REF:0000107 NCBI chr13:86,802,708...86,837,890
Ensembl chr13:84,270,316...84,305,497
JBrowse link
G Snx3 sorting nexin 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:47,574,051...47,607,577
Ensembl chr20:45,992,720...46,025,379
JBrowse link
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
GO_REF:0000044
(PMID:21148482)
UniProt
Ensembl
RGD
PMID:21148482 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr13:45,298,192...45,519,330
Ensembl chr13:42,745,947...42,967,058
JBrowse link
G Stx11 syntaxin 11 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:9,111,216...9,140,227
Ensembl chr 1:7,289,976...7,320,164
JBrowse link
G Stx12 syntaxin 12 located_in ISO (PMID:15469992) RGD PMID:15469992 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Stx4 syntaxin 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stx6 syntaxin 6 located_in ISO (PMID:22190682) RGD PMID:22190682 NCBI chr13:69,882,647...69,928,895
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Stx8 syntaxin 8 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:53,154,572...53,393,912
Ensembl chr10:52,654,990...52,894,993
JBrowse link
G Stxbp1 syntaxin binding protein 1 located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Stxbp2 syntaxin binding protein 2 located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr12:6,487,265...6,498,351
Ensembl chr12:1,689,410...1,700,458
JBrowse link
G Stxbp3 syntaxin binding protein 3 located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr 2:199,130,725...199,173,823
Ensembl chr 2:196,442,634...196,485,671
JBrowse link
G Stxbp4 syntaxin binding protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:75,301,868...75,458,741
Ensembl chr10:75,305,463...75,458,663
JBrowse link
G Syt11 synaptotagmin 11 located_in ISO
IEA
(PMID:25063865)
GO_REF:0000107
GO_REF:0000044
RGD
Ensembl
UniProt
PMID:25063865 GO_REF:0000044 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 located_in ISO
IEA
(PMID:19549681)
GO_REF:0000107
RGD
Ensembl
PMID:19549681 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tlr7 toll-like receptor 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:30,644,324...30,670,796
Ensembl chr  X:27,027,425...27,054,754
JBrowse link
G Tlr9 toll-like receptor 9 located_in ISO
IEA
UniProtKB:Q8VCW4 (PMID:18820679)
GO_REF:0000044
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18820679 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Uvrag UV radiation resistance associated located_in ISO
IEA
PR:Q9QUM4 (PMID:22493499)
GO_REF:0000107
RGD
Ensembl
PMID:22493499 GO_REF:0000107 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 5:166,780,927...166,791,522
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in ISS
ISO
PMID:15470500
(PMID:15470500)
RGD PMID:15470500 PMID:15470500 RGD:8554516 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vim vimentin located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr17:81,577,261...81,585,746
Ensembl chr17:76,668,647...76,677,187
JBrowse link
G Vps26b VPS26 retromer complex component B located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr 8:25,415,877...25,436,985
Ensembl chr 8:25,415,261...25,436,985
JBrowse link
G Was WASP actin nucleation promoting factor located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr  X:17,077,057...17,085,802
Ensembl chr  X:14,405,124...14,413,849
JBrowse link
G Zdhhc5 zinc finger DHHC-type palmitoyltransferase 5 located_in ISO
IEA
(PMID:31649195)
GO_REF:0000107
RGD
Ensembl
PMID:31649195 GO_REF:0000107 NCBI chr 3:90,178,734...90,206,889
Ensembl chr 3:69,771,890...69,799,921
JBrowse link
G Zyx zyxin located_in ISO
IEA
(PMID:19144319)
GO_REF:0000107
RGD
Ensembl
PMID:19144319 GO_REF:0000107 NCBI chr 4:71,236,767...71,246,553
Ensembl chr 4:71,237,451...71,246,553
JBrowse link
early phagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 located_in ISO (PMID:25568335) RGD PMID:25568335 NCBI chr16:2,125,234...2,173,457
Ensembl chr16:2,121,255...2,166,692
JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in ISO
IEA
(PMID:25568335)
GO_REF:0000107
RGD
Ensembl
PMID:25568335 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Pla2g5 phospholipase A2, group V located_in ISS
ISO
GO_REF:0000024
(PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:25568335)
UniProt
RGD
PMID:25568335 GO_REF:0000024 NCBI chr 9:6,720,057...6,749,456
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:72,544,798...72,546,910
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Slc9a9 solute carrier family 9 member A9 located_in ISO
IEA
(PMID:35716776)
GO_REF:0000107
RGD
Ensembl
PMID:35716776 GO_REF:0000107 NCBI chr 8:95,232,889...95,797,262
Ensembl chr 8:95,232,905...95,796,318
JBrowse link
G Snx3 sorting nexin 3 located_in ISO
ISS
(PMID:23237080)
GO_REF:0000024
RGD
UniProt
PMID:23237080 GO_REF:0000024 NCBI chr20:47,574,051...47,607,577
Ensembl chr20:45,992,720...46,025,379
JBrowse link
G Syk spleen associated tyrosine kinase located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:15845454)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15845454 GO_REF:0000024 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Syt11 synaptotagmin 11 located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23303671), (PMID:28686317)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23303671 PMID:28686317 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Syt7 synaptotagmin 7 located_in ISS
ISO
GO_REF:0000024
(PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Tlr7 toll-like receptor 7 located_in ISO
IEA
(PMID:18305481)
GO_REF:0000107
RGD
Ensembl
PMID:18305481 GO_REF:0000107 NCBI chr  X:30,644,324...30,670,796
Ensembl chr  X:27,027,425...27,054,754
JBrowse link
G Tlr9 toll-like receptor 9 located_in ISO
IEA
(PMID:18305481)
GO_REF:0000107
RGD
Ensembl
PMID:18305481 GO_REF:0000107 NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Unc13b unc-13 homolog B located_in ISO (PMID:23197834) RGD PMID:23197834 NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:57,289,227...57,502,926
JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator located_in ISO
IEA
(PMID:18305481)
GO_REF:0000107
RGD
Ensembl
PMID:18305481 GO_REF:0000107 NCBI chr 1:210,596,639...210,607,579
Ensembl chr 1:201,152,693...201,178,338
JBrowse link
early phagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in ISO
IEA
(PMID:27219021)
GO_REF:0000107
RGD
Ensembl
PMID:27219021 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Mtmr4 myotubularin related protein 4 is_active_in ISO (PMID:31543504) RGD PMID:31543504 NCBI chr10:72,890,665...72,913,598
Ensembl chr10:72,392,551...72,416,342
JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25568335)
UniProt
Ensembl
RGD
PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:112,693,596...112,828,104
Ensembl chr 9:105,246,709...105,381,253
JBrowse link
phagocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07044383.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:3,403,777...3,436,874 JBrowse link
G AABR07044397.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:2,496,605...2,497,428 JBrowse link
G Anxa3 annexin A3 located_in ISO (PMID:7526843) RGD PMID:7526843 NCBI chr14:13,031,675...13,085,678
Ensembl chr14:12,719,795...12,781,617
JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754
JBrowse link
G Clec4e C-type lectin domain family 4, member E is_active_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:18490740)
UniProt
Ensembl
RGD
PMID:18490740 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:158,292,624...158,298,607
Ensembl chr 4:156,607,614...156,612,767
JBrowse link
G Coro1a coronin 1A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 located_in ISO (PMID:10485905) RGD PMID:10485905 NCBI chr 1:195,047,702...195,126,704
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Dnm2 dynamin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G ENSRNOG00000064836 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:2,606,621...2,618,153 JBrowse link
G Hvcn1 hydrogen voltage-gated channel 1 located_in ISO (PMID:24415791) RGD PMID:24415791 NCBI chr12:40,001,205...40,030,671
Ensembl chr12:34,335,190...34,370,141
JBrowse link
G Inpp5b inositol polyphosphate-5-phosphatase B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:142,281,454...142,345,993
Ensembl chr 5:136,996,686...137,061,315
JBrowse link
G Irgm immunity-related GTPase M located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IEA
ISO
GO_REF:0000107
MGI:2446573 (PMID:9670047)
Ensembl
RGD
PMID:9670047 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in
located_in
ISS
ISO
IEA
GO_REF:0000024
(PMID:37347855)
GO_REF:0000044
UniProt
RGD
PMID:37347855 GO_REF:0000024 GO_REF:0000044 NCBI chr 1:218,876,848...218,881,364
Ensembl chr 1:209,452,133...209,458,855
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:131,955,775...132,018,298
Ensembl chr  X:127,089,590...127,140,362
JBrowse link
G Pfpl pore forming protein-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:209,412,059...209,415,339
Ensembl chr 1:209,412,515...209,414,608
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing located_in ISO
IEA
(PMID:30612035)
GO_REF:0000107
RGD
Ensembl
PMID:30612035 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 located_in
is_active_in
ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
Ensembl
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr15:24,146,854...24,150,739
Ensembl chr15:24,146,856...24,150,702
JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 located_in
is_active_in
ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
Ensembl
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:28,259,821...28,307,225
Ensembl chr 5:28,259,760...28,307,225
JBrowse link
G Rab10 RAB10, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:31,974,858...32,039,554
Ensembl chr 6:26,266,859...26,320,193
JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:15,223,613...15,236,754
Ensembl chr 7:14,521,368...14,534,593
JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:112,693,596...112,828,104
Ensembl chr 9:105,246,709...105,381,253
JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,581,542...63,585,608
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:121,806,992...121,826,694
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:6,720,057...6,749,456
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:72,544,798...72,546,910
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:76,340,106...76,417,638
Ensembl chr 8:67,458,923...67,536,384
JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:27,955,552...28,009,870
Ensembl chr  X:27,952,204...28,001,622
JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:105,013,178...105,023,872
Ensembl chr  X:100,220,894...100,231,701
JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IDA RGD PMID:18832707 RGD:9835043 NCBI chr 3:33,296,211...33,414,119
Ensembl chr 3:12,898,266...13,013,984
JBrowse link
G RT1-A RT1 class I, locus A located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G RT1-A2 RT1 class Ia, locus A2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:4,872,720...4,876,425 JBrowse link
G RT1-CE1 RT1 class I, locus 1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,560,455...3,564,428
Ensembl chr20:3,555,782...3,559,486
JBrowse link
G RT1-CE10 RT1 class I, locus CE10 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,381,377...3,385,052 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,355,422...3,385,063
Ensembl chr20:3,350,937...3,380,362
JBrowse link
G RT1-CE12 RT1 class I, locus CE12 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,290,831...3,347,349 JBrowse link
G RT1-CE14 RT1 class I, locus CE14 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,301,813...3,305,472
Ensembl chr20:3,297,196...3,305,134
JBrowse link
G RT1-CE16 RT1 class I, locus CE16 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,261,656...3,265,548
Ensembl chr20:3,257,123...3,279,563
JBrowse link
G RT1-CE2 RT1 class I, locus CE2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,542,984...3,546,753
Ensembl chr20:3,537,809...3,541,790
JBrowse link
G Rt1-ec3 RT1 class I, locus EC3 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr20:3,310,825...3,421,372 JBrowse link
G RT1-O1l1 RT1 class Ib, locus O1 like 1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,627,434...2,664,895
Ensembl chr20:2,623,953...2,692,081
JBrowse link
G RT1-S2 RT1 class Ib, locus S2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,655,054...2,664,895
Ensembl chr20:2,649,964...2,652,027
JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,689,329...2,749,848
Ensembl chr20:2,684,515...2,692,511
Ensembl chr20:2,684,515...2,692,511
JBrowse link
G Slc11a1 solute carrier family 11 member 1 located_in
is_active_in
ISO
IBA
IEA
(PMID:12070036)
MGI:2446573 (PMID:11067873), (PMID:9034150), (PMID:9271100)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:9034150 PMID:9271100 PMID:11067873 PMID:12070036 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101
JBrowse link
G Slc15a2 solute carrier family 15 member 2 is_active_in
located_in
ISO
IEA
(PMID:20406817)
GO_REF:0000107
GO_REF:0000044
RGD
Ensembl
UniProt
PMID:20406817 GO_REF:0000044 GO_REF:0000107 NCBI chr11:77,519,565...77,548,609
Ensembl chr11:64,014,182...64,043,225
JBrowse link
G Slc48a1 solute carrier family 48 member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:130,794,233...130,802,119
Ensembl chr 7:128,915,195...128,923,024
JBrowse link
G Slc9a9 solute carrier family 9 member A9 located_in ISO
IEA
(PMID:35716776)
GO_REF:0000044
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:35716776 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:95,232,889...95,797,262
Ensembl chr 8:95,232,905...95,796,318
JBrowse link
G Syt7 synaptotagmin 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 located_in ISO
IEA
(PMID:19549681)
GO_REF:0000107
RGD
Ensembl
PMID:19549681 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tlr2 toll-like receptor 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp9 vesicle-associated membrane protein 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:9,948,859...9,985,508
Ensembl chr14:9,644,582...9,681,205
JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in ISO
IEA
(PMID:17548643)
GO_REF:0000107
RGD
Ensembl
PMID:17548643 GO_REF:0000107 NCBI chr 1:204,206,206...204,218,988
Ensembl chr 1:194,770,060...194,788,801
JBrowse link
G Pla2g5 phospholipase A2, group V located_in ISS
ISO
GO_REF:0000024
(PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO
GO_REF:0000107
(PMID:23395172)
Ensembl
RGD
PMID:23395172 GO_REF:0000107 NCBI chr16:83,058,131...83,082,843
Ensembl chr16:76,355,984...76,381,883
JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in ISS
ISO
GO_REF:0000024
(PMID:31537793)
UniProt
RGD
PMID:31537793 GO_REF:0000024 NCBI chr 1:218,876,848...218,881,364
Ensembl chr 1:209,452,133...209,458,855
JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in ISO
IEA
(PMID:23395172)
GO_REF:0000107
RGD
Ensembl
PMID:23395172 GO_REF:0000107 NCBI chr 7:130,794,233...130,802,119
Ensembl chr 7:128,915,195...128,923,024
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      cytoplasm 12301
        cytoplasmic vesicle 2072
          endocytic vesicle 225
            phagocytic vesicle 127
              clathrin-coated phagocytic vesicle + 0
              early phagosome + 16
              pexophagosome 0
              phagocytic vesicle lumen + 0
              phagocytic vesicle membrane + 56
              phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      organelle 14293
        membrane-bounded organelle 12863
          vesicle 2268
            intracellular vesicle 2081
              cytoplasmic vesicle 2072
                endocytic vesicle 225
                  phagocytic vesicle 127
                    clathrin-coated phagocytic vesicle + 0
                    early phagosome + 16
                    pexophagosome 0
                    phagocytic vesicle lumen + 0
                    phagocytic vesicle membrane + 56
                    phagolysosome + 5
paths to the root