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ONTOLOGY REPORT - ANNOTATIONS

Term:phagocytic vesicle
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Accession:GO:0045335 term browser browse the term
Definition:A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
Synonyms:exact_synonym: phagosome
 xref: Wikipedia:Phagosome
 never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
phagocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP-binding cassette, sub-family A member 1 located_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:53,030,789...53,159,988
Ensembl chr 4:53,030,787...53,159,895 		JBrowse link
G Actg1 actin, gamma, cytoplasmic 1 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:120,236,513...120,239,321
Ensembl chr11:120,236,516...120,239,368 		JBrowse link
G Ambra1 autophagy/beclin 1 regulator 1 located_in IDA (PMID:22493499) MGI PMID:22493499 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Anxa11 annexin A11 located_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:25,842,575...25,887,228
Ensembl chr14:25,842,580...25,887,228 		JBrowse link
G Atg14 autophagy related 14 located_in IDA (PMID:22493499) MGI PMID:22493499 NCBI chr14:47,778,350...47,805,891
Ensembl chr14:47,778,350...47,808,106 		JBrowse link
G Becn1 beclin 1, autophagy related located_in IDA (PMID:22493499) MGI PMID:22493499 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Calr calreticulin located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr 8:85,568,717...85,573,560
Ensembl chr 8:85,568,479...85,573,563 		JBrowse link
G Capg capping actin protein, gelsolin like located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 6:72,515,265...72,539,966
Ensembl chr 6:72,521,374...72,539,966 		JBrowse link
G Cd82 CD82 antigen located_in IEA UniProt GO_REF:0000044 NCBI chr 2:93,249,447...93,293,295
Ensembl chr 2:93,249,456...93,293,485 		JBrowse link
G Cdc42 cell division cycle 42 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Cdc42ep2 CDC42 effector protein 2 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr19:5,967,584...5,974,844
Ensembl chr19:5,965,664...5,974,844 		JBrowse link
G Cdc42ep4 CDC42 effector protein 4 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:113,617,676...113,643,369
Ensembl chr11:113,617,676...113,642,707 		JBrowse link
G Clcn3 chloride channel, voltage-sensitive 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:61,363,423...61,436,351
Ensembl chr 8:61,363,423...61,436,334 		JBrowse link
G Coro1a coronin, actin binding protein 1A located_in ISO GO_Central GO_REF:0000119 NCBI chr 7:126,298,946...126,303,925
Ensembl chr 7:126,298,945...126,306,959 		JBrowse link
G Ctss cathepsin S located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:95,434,097...95,463,716
Ensembl chr 3:95,434,097...95,463,714 		JBrowse link
G Cybb cytochrome b-245, beta polypeptide located_in IDA (PMID:23303671) ParkinsonsUK-UCL PMID:23303671 NCBI chr  X:9,301,493...9,354,005
Ensembl chr  X:9,301,491...9,354,010 		JBrowse link
G Evl Ena-vasodilator stimulated phosphoprotein located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr12:108,520,942...108,654,775
Ensembl chr12:108,520,979...108,654,775 		JBrowse link
G Flnb filamin, beta located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr14:14,518,185...14,651,852
Ensembl chr14:14,518,185...14,651,816 		JBrowse link
G Fmnl1 formin-like 1 located_in IDA (PMID:21148482) UniProt PMID:21148482 NCBI chr11:103,061,401...103,089,727
Ensembl chr11:103,061,933...103,089,727 		JBrowse link
G Gsn gelsolin located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 2:35,146,371...35,197,914
Ensembl chr 2:35,146,392...35,197,904 		JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 located_in ISO RGD
GO_Central		 PMID:18414680 GO_REF:0000096 RGD:2316597 NCBI chr11:46,630,644...46,670,405
Ensembl chr11:46,625,907...46,670,405 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Kif16b kinesin family member 16B located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 2:142,459,399...142,743,535
Ensembl chr 2:142,459,394...142,743,451 		JBrowse link
G Kif5b kinesin family member 5B located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in IMP (PMID:22190682) AgBase PMID:22190682 NCBI chr 8:13,209,161...13,225,338
Ensembl chr 8:13,209,161...13,225,338 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 located_in IEA UniProt GO_REF:0000044 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323 		JBrowse link
G Mpeg1 macrophage expressed gene 1 located_in IDA (PMID:26402460) UniProt PMID:26402460 NCBI chr19:12,438,134...12,442,649
Ensembl chr19:12,438,143...12,442,649 		JBrowse link
G Mtor mechanistic target of rapamycin kinase located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Myh9 myosin, heavy polypeptide 9, non-muscle located_in ISO GO_Central GO_REF:0000096 NCBI chr15:77,644,788...77,726,315
Ensembl chr15:77,644,787...77,726,375 		JBrowse link
G Myo18a myosin XVIIIA located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:77,654,066...77,756,806
Ensembl chr11:77,654,072...77,756,806 		JBrowse link
G Myo1c myosin IC located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:75,541,345...75,565,450
Ensembl chr11:75,541,330...75,564,736 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 located_in IDA (PMID:31649195) UniProt PMID:31649195 NCBI chr 6:54,900,927...54,949,655
Ensembl chr 6:54,900,934...54,949,597 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 located_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IDA (PMID:22493499) MGI PMID:22493499 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Pld4 phospholipase D family member 4 located_in
is_active_in		 IDA
IBA		 (PMID:22102906) MGI
GO_Central		 PMID:22102906 GO_REF:0000033 NCBI chr12:112,727,089...112,735,420
Ensembl chr12:112,727,089...112,735,424 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family located_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:64,622,582...64,645,038
Ensembl chr 9:64,622,581...64,645,040 		JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:33,961,458...33,979,460
Ensembl chr17:33,961,458...33,979,504 		JBrowse link
G Rab11fip5 RAB11 family interacting protein 5 (class I) located_in
is_active_in		 IDA
IBA		 (PMID:19144319) MGI
GO_Central		 PMID:19144319 GO_REF:0000033 NCBI chr 6:85,311,944...85,351,663
Ensembl chr 6:85,311,944...85,351,616 		JBrowse link
G Rab12 RAB12, member RAS oncogene family located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr17:66,801,507...66,826,712
Ensembl chr17:66,801,507...66,826,724 		JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in
is_active_in		 ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:35,070,217...35,091,132
Ensembl chr 2:35,070,217...35,091,132 		JBrowse link
G Rab20 RAB20, member RAS oncogene family located_in IDA
ISS
ISO		 (PMID:19144319) MGI
UniProt
GO_Central		 PMID:19144319 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:11,503,390...11,528,640
Ensembl chr 8:11,503,518...11,528,710 		JBrowse link
G Rab22a RAB22A, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:173,501,638...173,543,975
Ensembl chr 2:173,501,553...173,549,136 		JBrowse link
G Rab23 RAB23, member RAS oncogene family located_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:65,958,721...66,079,747
Ensembl chr17:65,958,724...66,079,747 		JBrowse link
G Rab32 RAB32, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:10,420,783...10,433,951
Ensembl chr10:10,420,746...10,434,009 		JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in ISS
ISO
IDA		 (PMID:23197834) UniProt
GO_Central
ParkinsonsUK-UCL		 PMID:23197834 GO_REF:0000024 GO_REF:0000119 NCBI chr11:78,079,253...78,083,019
Ensembl chr11:78,079,256...78,083,019 		JBrowse link
G Rab38 RAB38, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:88,079,481...88,140,780
Ensembl chr 7:88,079,481...88,140,780 		JBrowse link
G Rab39 RAB39, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:53,595,410...53,617,532
Ensembl chr 9:53,595,410...53,617,532 		JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in IDA
ISO
ISS		 (PMID:19144319) MGI
GO_Central
UniProt		 PMID:19144319 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:87,765,835...87,789,146
Ensembl chr 6:87,765,835...87,789,146 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IDA (PMID:22493499), (PMID:25568335) MGI PMID:22493499 PMID:25568335 NCBI chr17:53,786,262...53,814,706
Ensembl chr17:53,786,262...53,814,708 		JBrowse link
G Rab7 RAB7, member RAS oncogene family located_in
is_active_in		 ISO
IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:87,976,088...88,022,252
Ensembl chr 6:87,976,088...88,022,252 		JBrowse link
G Rab7b RAB7B, member RAS oncogene family located_in
is_active_in		 IDA
IBA
ISS
ISO		 (PMID:19144319) MGI
GO_Central
UniProt		 PMID:19144319 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:131,616,412...131,646,288
Ensembl chr 1:131,616,433...131,643,177 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:66,750,891...66,826,987
Ensembl chr 9:66,750,946...66,826,969 		JBrowse link
G Rab9 RAB9, member RAS oncogene family located_in
is_active_in		 ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr  X:165,240,247...165,262,863
Ensembl chr  X:165,240,249...165,262,863 		JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in
is_active_in		 ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr  X:135,758,896...135,769,305
Ensembl chr  X:135,758,896...135,769,504 		JBrowse link
G Rap1a RAS-related protein 1a located_in ISO RGD
GO_Central		 PMID:18832707 GO_REF:0000096 RGD:9835043 NCBI chr 3:105,634,576...105,708,740
Ensembl chr 3:105,634,583...105,708,652 		JBrowse link
G Rnf115 ring finger protein 115 located_in IEA UniProt GO_REF:0000044 NCBI chr 3:96,634,869...96,698,471
Ensembl chr 3:96,634,980...96,698,954 		JBrowse link
G Scimp SLP adaptor and CSK interacting membrane protein located_in IMP (PMID:27288407) UniProt PMID:27288407 NCBI chr11:70,681,758...70,703,387
Ensembl chr11:70,681,758...70,703,412 		JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 located_in IDA (PMID:22493499) MGI PMID:22493499 NCBI chr 1:171,594,700...171,628,752
Ensembl chr 1:171,594,695...171,628,752 		JBrowse link
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 located_in IDA (PMID:21148482) UniProt PMID:21148482 NCBI chr 1:131,212,989...131,455,269
Ensembl chr 1:131,212,989...131,455,090 		JBrowse link
G Stx11 syntaxin 11 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr10:12,813,961...12,840,242
Ensembl chr10:12,813,953...12,840,042 		JBrowse link
G Stx12 syntaxin 12 located_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:132,581,375...132,611,769
Ensembl chr 4:132,580,812...132,611,820 		JBrowse link
G Stx4a syntaxin 4A (placental) located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 7:127,439,832...127,450,160
Ensembl chr 7:127,423,466...127,448,191 		JBrowse link
G Stx6 syntaxin 6 located_in IMP (PMID:22190682) AgBase PMID:22190682 NCBI chr 1:155,034,374...155,083,405
Ensembl chr 1:155,034,461...155,084,002 		JBrowse link
G Stx8 syntaxin 8 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:67,857,237...68,097,974
Ensembl chr11:67,857,019...68,097,974 		JBrowse link
G Stxbp1 syntaxin binding protein 1 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 2:32,677,619...32,737,249
Ensembl chr 2:32,677,614...32,737,257 		JBrowse link
G Stxbp2 syntaxin binding protein 2 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 8:3,680,960...3,693,998
Ensembl chr 8:3,680,955...3,693,644 		JBrowse link
G Stxbp3 syntaxin binding protein 3 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 3:108,700,496...108,747,818
Ensembl chr 3:108,700,492...108,747,842 		JBrowse link
G Stxbp4 syntaxin binding protein 4 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr11:90,367,318...90,528,962
Ensembl chr11:90,367,318...90,528,910 		JBrowse link
G Syt11 synaptotagmin XI located_in IDA (PMID:25063865) ParkinsonsUK-UCL PMID:25063865 NCBI chr 3:88,652,006...88,682,466
Ensembl chr 3:88,652,007...88,682,471 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 located_in IDA (PMID:19549681) MGI PMID:19549681 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tlr1 toll-like receptor 1 located_in NAS (PMID:11095740) UniProt PMID:11095740 NCBI chr 5:65,082,023...65,090,945
Ensembl chr 5:65,082,022...65,090,906 		JBrowse link
G Tlr9 toll-like receptor 9 located_in IGI (PMID:18820679) UniProt PMID:18820679 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082 		JBrowse link
G Trim14 tripartite motif-containing 14 located_in IEA UniProt GO_REF:0000044 NCBI chr 4:46,505,072...46,536,148
Ensembl chr 4:46,493,781...46,536,141 		JBrowse link
G Uvrag UV radiation resistance associated gene located_in IPI (PMID:22493499) MGI PMID:22493499 NCBI chr 7:98,535,949...98,790,373
Ensembl chr 7:98,534,228...98,790,348 		JBrowse link
G Vamp3 vesicle-associated membrane protein 3 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 4:151,131,762...151,142,410
Ensembl chr 4:151,131,757...151,142,420 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 1:162,398,084...162,426,651
Ensembl chr 1:162,398,084...162,426,653 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in IDA (PMID:15470500) UniProt PMID:15470500
G Vamp8 vesicle-associated membrane protein 8 located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 6:72,362,204...72,367,650
Ensembl chr 6:72,362,206...72,367,686 		JBrowse link
G Vim vimentin located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 2:13,579,122...13,587,637
Ensembl chr 2:13,578,738...13,587,637 		JBrowse link
G Vps26b VPS26 retromer complex component B located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 9:26,915,798...26,941,390
Ensembl chr 9:26,919,067...26,941,361 		JBrowse link
G Was Wiskott-Aldrich syndrome located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr  X:7,947,705...7,956,730
Ensembl chr  X:7,947,692...7,956,737 		JBrowse link
G Zdhhc5 zinc finger, DHHC domain containing 5 located_in IDA
ISO		 (PMID:31649195) UniProt
GO_Central		 PMID:31649195 GO_REF:0000119 NCBI chr 2:84,518,264...84,545,508
Ensembl chr 2:84,518,314...84,545,524 		JBrowse link
G Zyx zyxin located_in IDA (PMID:19144319) MGI PMID:19144319 NCBI chr 6:42,326,507...42,337,158
Ensembl chr 6:42,326,564...42,337,147 		JBrowse link
early phagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 located_in IDA (PMID:25568335) UniProt PMID:25568335 NCBI chr14:26,640,943...26,692,567
Ensembl chr14:26,640,945...26,693,189 		JBrowse link
G Appl2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 located_in IDA (PMID:25568335) UniProt PMID:25568335 NCBI chr10:83,435,897...83,484,741
Ensembl chr10:83,435,897...83,484,602 		JBrowse link
G Pla2g5 phospholipase A2, group V located_in IDA (PMID:16407308) UniProt PMID:16407308 NCBI chr 4:138,526,558...138,590,784
Ensembl chr 4:138,526,555...138,590,793 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IDA (PMID:25568335) UniProt PMID:25568335 NCBI chr17:53,786,262...53,814,706
Ensembl chr17:53,786,262...53,814,708 		JBrowse link
G Slc9a9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 located_in IDA (PMID:35716776) UniProt PMID:35716776 NCBI chr 9:94,551,945...95,112,505
Ensembl chr 9:94,551,962...95,112,498 		JBrowse link
G Snx3 sorting nexin 3 located_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:42,378,050...42,411,365
Ensembl chr10:42,378,026...42,411,377 		JBrowse link
G Syk spleen tyrosine kinase located_in IDA (PMID:15845454) UniProt PMID:15845454 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Syt11 synaptotagmin XI located_in IDA (PMID:23303671), (PMID:28686317) UniProt PMID:23303671 PMID:28686317 NCBI chr 3:88,652,006...88,682,466
Ensembl chr 3:88,652,007...88,682,471 		JBrowse link
G Syt7 synaptotagmin VII located_in IDA (PMID:16982801) UniProt PMID:16982801 NCBI chr19:10,366,142...10,430,545
Ensembl chr19:10,366,454...10,430,544 		JBrowse link
G Tlr7 toll-like receptor 7 located_in IDA (PMID:18305481) UniProt PMID:18305481 NCBI chr  X:166,086,376...166,113,570
Ensembl chr  X:166,087,925...166,113,554 		JBrowse link
G Tlr9 toll-like receptor 9 located_in IDA (PMID:18305481) UniProt PMID:18305481 NCBI chr 9:106,099,797...106,104,075
Ensembl chr 9:106,099,797...106,104,082 		JBrowse link
G Unc13b unc-13 homolog B located_in IDA (PMID:23197834) ParkinsonsUK-UCL PMID:23197834 NCBI chr 4:43,046,193...43,264,873
Ensembl chr 4:43,058,953...43,264,871 		JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator located_in IDA (PMID:18305481) UniProt PMID:18305481 NCBI chr19:3,985,222...3,999,340
Ensembl chr19:3,985,186...3,999,340 		JBrowse link
early phagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 located_in IDA (PMID:27219021) UniProt PMID:27219021 NCBI chr10:83,435,897...83,484,741
Ensembl chr10:83,435,897...83,484,602 		JBrowse link
G Mtmr4 myotubularin related protein 4 is_active_in ISS UniProt GO_REF:0000024 NCBI chr11:87,482,769...87,507,128
Ensembl chr11:87,482,988...87,507,128 		JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in IDA (PMID:25568335) UniProt PMID:25568335 NCBI chr17:65,958,721...66,079,747
Ensembl chr17:65,958,724...66,079,747 		JBrowse link
phagocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa3 annexin A3 located_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:96,941,257...96,993,825
Ensembl chr 5:96,941,198...96,993,825 		JBrowse link
G B2m beta-2 microglobulin located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Clec4e C-type lectin domain family 4, member e is_active_in IDA (PMID:18490740) UniProt PMID:18490740 NCBI chr 6:123,258,748...123,266,830
Ensembl chr 6:123,258,748...123,266,829 		JBrowse link
G Coro1a coronin, actin binding protein 1A located_in IEA UniProt GO_REF:0000044 NCBI chr 7:126,298,946...126,303,925
Ensembl chr 7:126,298,945...126,306,959 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 located_in ISO GO_Central GO_REF:0000119 NCBI chr 7:130,633,787...130,723,357
Ensembl chr 7:130,633,776...130,723,357 		JBrowse link
G Dnm2 dynamin 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 9:21,336,167...21,419,055
Ensembl chr 9:21,336,204...21,419,055 		JBrowse link
G H2-D1 histocompatibility 2, D region locus 1 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:35,482,070...35,486,473
Ensembl chr17:35,481,706...35,486,475 		JBrowse link
G H2-K1 histocompatibility 2, K1, K region located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:34,214,986...34,219,316
Ensembl chr17:34,214,991...34,219,321 		JBrowse link
G H2-L histocompatibility 2, D region locus L located_in TAS Reactome Reactome:R-NUL-1236962
G H2-Q10 histocompatibility 2, Q region locus 10 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:35,780,986...35,785,460
Ensembl chr17:35,780,986...35,785,460 		JBrowse link
G H2-Q7 histocompatibility 2, Q region locus 7 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:35,658,131...35,662,749
Ensembl chr17:35,658,131...35,662,749 		JBrowse link
G H2-Q8 histocompatibility 2, Q region locus 8 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:35,737,710...35,742,945 JBrowse link
G H2-T23 histocompatibility 2, T region locus 23 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:36,340,869...36,343,593
Ensembl chr17:36,340,665...36,343,747 		JBrowse link
G H2-T3 histocompatibility 2, T region locus 3 located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:36,496,463...36,501,043
Ensembl chr17:36,496,464...36,501,179 		JBrowse link
G Hvcn1 hydrogen voltage-gated channel 1 located_in ISO
IDA		 (PMID:24415791) GO_Central
UniProt		 PMID:24415791 GO_REF:0000119 NCBI chr 5:122,344,872...122,380,360
Ensembl chr 5:122,344,867...122,380,360 		JBrowse link
G Inpp5b inositol polyphosphate-5-phosphatase B located_in IEA UniProt GO_REF:0000044 NCBI chr 4:124,635,620...124,695,304
Ensembl chr 4:124,635,643...124,695,304 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 located_in IEA UniProt GO_REF:0000044 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IMP (PMID:9670047) MGI PMID:9670047 NCBI chr  X:37,488,524...37,545,337
Ensembl chr  X:37,490,234...37,545,331 		JBrowse link
G Mcoln1 mucolipin 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 8:3,550,458...3,565,232
Ensembl chr 8:3,550,457...3,565,232 		JBrowse link
G Mpeg1 macrophage expressed gene 1 is_active_in IDA (PMID:37347855) UniProt PMID:37347855 NCBI chr19:12,438,134...12,442,649
Ensembl chr19:12,438,143...12,442,649 		JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in IEA UniProt GO_REF:0000044 NCBI chr  X:47,001,289...47,055,305
Ensembl chr  X:47,001,264...47,054,745 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing located_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 located_in
is_active_in		 IDA
IBA		 (PMID:29378918) UniProt
GO_Central		 PMID:29378918 GO_REF:0000033 NCBI chr14:51,164,672...51,168,306
Ensembl chr14:51,163,525...51,168,313 		JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 located_in
is_active_in		 IDA
IBA		 (PMID:29378918) UniProt
GO_Central		 PMID:29378918 GO_REF:0000033 NCBI chr 4:14,864,219...14,915,501
Ensembl chr 4:14,864,076...14,915,176 		JBrowse link
G Rab10 RAB10, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr12:3,297,428...3,359,969
Ensembl chr12:3,297,428...3,359,969 		JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr17:33,961,458...33,979,460
Ensembl chr17:33,961,458...33,979,504 		JBrowse link
G Rab11fip1 RAB11 family interacting protein 1 (class I) located_in IEA UniProt GO_REF:0000044 NCBI chr 8:27,628,801...27,664,707
Ensembl chr 8:27,628,801...27,664,674 		JBrowse link
G Rab20 RAB20, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 8:11,503,390...11,528,640
Ensembl chr 8:11,503,518...11,528,710 		JBrowse link
G Rab22a RAB22A, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 2:173,501,638...173,543,975
Ensembl chr 2:173,501,553...173,549,136 		JBrowse link
G Rab23 RAB23, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Rab32 RAB32, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr10:10,420,783...10,433,951
Ensembl chr10:10,420,746...10,434,009 		JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr11:78,079,253...78,083,019
Ensembl chr11:78,079,256...78,083,019 		JBrowse link
G Rab38 RAB38, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 7:88,079,481...88,140,780
Ensembl chr 7:88,079,481...88,140,780 		JBrowse link
G Rab39 RAB39, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 9:53,595,410...53,617,532
Ensembl chr 9:53,595,410...53,617,532 		JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 6:87,765,835...87,789,146
Ensembl chr 6:87,765,835...87,789,146 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr17:53,786,262...53,814,706
Ensembl chr17:53,786,262...53,814,708 		JBrowse link
G Rab7 RAB7, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 6:87,976,088...88,022,252
Ensembl chr 6:87,976,088...88,022,252 		JBrowse link
G Rab7b RAB7B, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 1:131,616,412...131,646,288
Ensembl chr 1:131,616,433...131,643,177 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr 9:66,750,891...66,826,987
Ensembl chr 9:66,750,946...66,826,969 		JBrowse link
G Rab9 RAB9, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr  X:165,240,247...165,262,863
Ensembl chr  X:165,240,249...165,262,863 		JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in IEA UniProt GO_REF:0000044 NCBI chr  X:135,758,896...135,769,305
Ensembl chr  X:135,758,896...135,769,504 		JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor (GEF) 1 located_in ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:18832707 GO_REF:0000096 GO_REF:0000107 RGD:9835043 NCBI chr 2:29,509,732...29,630,376
Ensembl chr 2:29,509,732...29,630,990 		JBrowse link
G Rilp Rab interacting lysosomal protein located_in IEA UniProt GO_REF:0000044 NCBI chr11:75,400,920...75,403,994
Ensembl chr11:75,400,920...75,403,994 		JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 located_in TAS Reactome Reactome:R-NUL-1236959 NCBI chr 6:88,480,589...88,495,782
Ensembl chr 6:88,480,561...88,495,887 		JBrowse link
G Slc11a1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 located_in
is_active_in		 IMP
IBA
ISO
IDA		 (PMID:11067873)
(PMID:11067873), (PMID:9034150), (PMID:9271100)		 MGI
GO_Central		 PMID:9034150 PMID:9271100 PMID:11067873 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:74,414,318...74,429,974
Ensembl chr 1:74,414,354...74,425,221 		JBrowse link
G Slc15a2 solute carrier family 15 (H+/peptide transporter), member 2 is_active_in
located_in		 ISO
IEA		 GO_Central
UniProt		 GO_REF:0000044 GO_REF:0000119 NCBI chr16:36,570,523...36,605,506
Ensembl chr16:36,570,539...36,605,324 		JBrowse link
G Slc9a9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 located_in IDA (PMID:35716776) UniProt PMID:35716776 NCBI chr 9:94,551,945...95,112,505
Ensembl chr 9:94,551,962...95,112,498 		JBrowse link
G Syt7 synaptotagmin VII located_in IEA UniProt GO_REF:0000044 NCBI chr19:10,366,142...10,430,545
Ensembl chr19:10,366,454...10,430,544 		JBrowse link
G Tap1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) located_in TAS Reactome Reactome:R-NUL-1236944 NCBI chr17:34,406,530...34,416,199
Ensembl chr17:34,406,527...34,416,199 		JBrowse link
G Tapbp TAP binding protein located_in TAS Reactome Reactome:R-NUL-1236962 NCBI chr17:34,138,452...34,148,264
Ensembl chr17:34,134,873...34,148,266 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 located_in IDA (PMID:19549681) MGI PMID:19549681 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tlr1 toll-like receptor 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:65,082,023...65,090,945
Ensembl chr 5:65,082,022...65,090,906 		JBrowse link
G Tlr2 toll-like receptor 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074 		JBrowse link
G Tlr6 toll-like receptor 6 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:65,109,373...65,128,387
Ensembl chr 5:65,109,374...65,117,440 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in IEA UniProt GO_REF:0000044
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 a disintegrin and metallopeptidase domain 8 located_in ISO
ISS		 GO_Central
BHF-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:139,558,845...139,573,016
Ensembl chr 7:139,558,845...139,572,475 		JBrowse link
G Pla2g5 phospholipase A2, group V located_in IDA (PMID:16407308) UniProt PMID:16407308 NCBI chr 4:138,526,558...138,590,784
Ensembl chr 4:138,526,555...138,590,793 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IDA (PMID:23395172) MGI PMID:23395172 NCBI chr 8:13,209,161...13,225,338
Ensembl chr 8:13,209,161...13,225,338 		JBrowse link
G Mpeg1 macrophage expressed gene 1 is_active_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr19:12,438,134...12,442,649
Ensembl chr19:12,438,143...12,442,649 		JBrowse link
G Pfpl pore forming protein-like is_active_in ISO GO_Central GO_REF:0000119 NCBI chr19:12,405,290...12,409,474
Ensembl chr19:12,405,269...12,409,474 		JBrowse link
G Slc48a1 solute carrier family 48 (heme transporter), member 1 is_active_in IMP (PMID:23395172) MGI PMID:23395172 NCBI chr15:97,682,246...97,690,573
Ensembl chr15:97,676,401...97,690,573 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28581
    cellular anatomical structure 19625
      cytoplasm 12113
        cytoplasmic vesicle 2244
          endocytic vesicle 237
            phagocytic vesicle 131
              clathrin-coated phagocytic vesicle + 0
              early phagosome + 15
              pexophagosome 0
              phagocytic vesicle lumen + 0
              phagocytic vesicle membrane + 62
              phagolysosome + 6
Path 2
Term Annotations click to browse term
  cellular_component 28581
    cellular anatomical structure 19625
      organelle 13771
        membrane-bounded organelle 12805
          vesicle 2440
            intracellular vesicle 2252
              cytoplasmic vesicle 2244
                endocytic vesicle 237
                  phagocytic vesicle 131
                    clathrin-coated phagocytic vesicle + 0
                    early phagosome + 15
                    pexophagosome 0
                    phagocytic vesicle lumen + 0
                    phagocytic vesicle membrane + 62
                    phagolysosome + 6
paths to the root