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ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytic vesicle
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Accession:GO:0045335 term browser browse the term
Definition:A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
Synonyms:exact_synonym: phagosome
 xref: Wikipedia:Phagosome
 never_in_taxon: NCBITaxon:4751 ! Fungi



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phagocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 located_in ISO (PMID:15469992) RGD PMID:15469992 NCBI chr 5:72,473,676...72,596,563 JBrowse link
G Actg1 actin, gamma 1 located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr10:106,118,106...106,120,951 JBrowse link
G Actg1l1 actin, gamma 1 like 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:72,977,767...72,979,691 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 located_in ISO (PMID:22493499) RGD PMID:22493499 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Anxa11 annexin A11 located_in ISO (PMID:9188810) RGD PMID:9188810 NCBI chr16:1,419,627...1,464,590 JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:20,135,248...20,184,757 JBrowse link
G Atg14 autophagy related 14 located_in ISO (PMID:22493499) RGD PMID:22493499 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Becn1 beclin 1 located_in ISO (PMID:22493499) RGD PMID:22493499 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Capg capping actin protein, gelsolin like located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 4:106,152,912...106,170,010 JBrowse link
G Cdc42 cell division cycle 42 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 5:154,838,478...154,876,629 JBrowse link
G Cdc42ep2 CDC42 effector protein 2 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:203,202,000...203,210,891 JBrowse link
G Cdc42ep4 CDC42 effector protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:99,271,750...99,298,551 JBrowse link
G Clcn3 chloride voltage-gated channel 3 located_in ISO
IEA
(PMID:16522634)
GO_REF:0000107
RGD
Ensembl
PMID:16522634 GO_REF:0000107 NCBI chr16:29,127,152...29,200,133 JBrowse link
G Coro1a coronin 1A located_in ISO (PMID:17442961) RGD PMID:17442961 NCBI chr 1:181,295,561...181,300,566 JBrowse link
G Ctss cathepsin S located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:30612035)
UniProt
Ensembl
RGD
PMID:30612035 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:185,775,316...185,803,440 JBrowse link
G Cybb cytochrome b-245 beta chain located_in ISO (PMID:23303671) RGD PMID:23303671 NCBI chr  X:16,030,596...16,065,065 JBrowse link
G Evl Enah/Vasp-like located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 6:127,473,119...127,594,342 JBrowse link
G Flnb filamin B located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr15:16,961,999...17,095,059 JBrowse link
G Fmnl1 formin-like 1 located_in ISO (PMID:21148482) RGD PMID:21148482 NCBI chr10:88,115,876...88,143,342 JBrowse link
G Gsn gelsolin located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr 3:38,982,605...39,035,849 JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 IDA RGD PMID:18414680 RGD:2316597 NCBI chr10:31,118,667...31,151,730 JBrowse link
G Irgm immunity-related GTPase M located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Kif16b kinesin family member 16B located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 3:129,974,692...130,254,194 JBrowse link
G Kif5b kinesin family member 5B located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr17:56,185,386...56,222,990 JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in ISO (PMID:22190682) RGD PMID:22190682 NCBI chr16:83,058,131...83,082,843 JBrowse link
G Mpeg1 macrophage expressed 1 located_in ISS
ISO
GO_REF:0000024
(PMID:26402460)
UniProt
RGD
PMID:26402460 GO_REF:0000024 NCBI chr 1:209,452,176...209,456,692 JBrowse link
G Mtor mechanistic target of rapamycin kinase located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27623384)
UniProt
Ensembl
RGD
PMID:27623384 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Myh9 myosin, heavy chain 9 located_in IDA RGD PMID:19117932 RGD:6902913 NCBI chr 7:111,224,291...111,304,963 JBrowse link
G Myo18a myosin XVIIIa located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:62,654,218...62,755,465 JBrowse link
G Myo1c myosin 1C located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr10:60,996,642...61,019,022 JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 located_in ISO (PMID:31649195) RGD PMID:31649195 NCBI chr 4:85,391,142...85,442,281 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 located_in ISO (PMID:31649195) RGD PMID:31649195 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 located_in IEA
ISO
GO_REF:0000107
(PMID:22493499)
Ensembl
RGD
PMID:22493499 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Pld4 phospholipase D family, member 4 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:22102906)
GO_Central
RGD
PMID:22102906 GO_REF:0000033 NCBI chr 6:131,818,860...131,827,457 JBrowse link
G Rab11a RAB11a, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:21255211)
UniProt
RGD
PMID:21255211 GO_REF:0000024 NCBI chr 8:74,118,922...74,141,760 JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in ISO
ISS
(PMID:21255211)
GO_REF:0000024
RGD
UniProt
PMID:21255211 GO_REF:0000024 NCBI chr 7:15,223,613...15,236,754 JBrowse link
G Rab11fip5 RAB11 family interacting protein 5 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:19144319)
GO_Central
RGD
PMID:19144319 GO_REF:0000033 NCBI chr 4:117,871,301...117,908,819 JBrowse link
G Rab12 RAB12, member RAS oncogene family located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 9:113,927,119...113,953,722 JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in
is_active_in
ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000044
(PMID:21255211)
UniProt
GO_Central
RGD
PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 3:38,899,430...38,920,572 JBrowse link
G Rab20 RAB20, member RAS oncogene family located_in ISO (PMID:21255211)
(PMID:19144319)
RGD PMID:19144319 PMID:21255211 NCBI chr16:84,721,427...84,745,610 JBrowse link
G Rab22a RAB22A, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 3:162,459,727...162,506,129 JBrowse link
G Rab23 RAB23, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 9:35,943,522...35,967,367 JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISO
ISS
(PMID:21255211)
GO_REF:0000024
RGD
UniProt
PMID:21255211 GO_REF:0000024 NCBI chr 9:105,246,712...105,382,973 JBrowse link
G Rab32 RAB32, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:4,946,193...4,961,003 JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in
is_active_in
ISO
IBA
IEA
ISS
(PMID:21255211)
(PMID:23197834)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608 JBrowse link
G Rab38 RAB38, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:142,182,566...142,262,923 JBrowse link
G Rab39a RAB39A, member RAS oncogene family located_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 8:54,088,246...54,105,867 JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in ISO
ISS
(PMID:21255211)
(PMID:19144319)
GO_REF:0000024
RGD
UniProt
PMID:19144319 PMID:21255211 GO_REF:0000024 NCBI chr 4:120,249,650...120,269,174 JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:22493499), (PMID:25568335)
UniProt
RGD
PMID:22493499 PMID:25568335 GO_REF:0000024 NCBI chr 9:6,720,057...6,749,456 JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:68,332,360...68,334,470 JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in
is_active_in
ISO
IBA
ISS
(PMID:21255211)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Rab7b Rab7b, member RAS oncogene family located_in
is_active_in
ISO
IBA
(PMID:21255211)
(PMID:19144319)
GO_REF:0000033
RGD
GO_Central
PMID:19144319 PMID:21255211 GO_REF:0000033 NCBI chr13:45,673,396...45,699,798 JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in ISO
IEA
ISS
(PMID:21255211)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000107 NCBI chr16:17,688,049...17,709,412 JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:21255211)
UniProt
RGD
PMID:21255211 GO_REF:0000024 NCBI chr 8:76,340,106...76,417,638 JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:21255211)
UniProt
GO_Central
RGD
PMID:21255211 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:31,610,089...31,632,128 JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in
is_active_in
ISO
IBA
(PMID:21255211)
GO_REF:0000033
RGD
GO_Central
PMID:21255211 GO_REF:0000033 NCBI chr  X:100,220,897...100,231,591 JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IDA RGD PMID:18832707 RGD:9835043 NCBI chr 2:195,896,967...195,974,851 JBrowse link
G Scimp SLP adaptor and CSK interacting membrane protein located_in ISO (PMID:27288407) RGD PMID:27288407 NCBI chr10:55,507,646...55,527,764 JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 located_in ISO (PMID:22493499) RGD PMID:22493499 NCBI chr13:86,802,708...86,837,890 JBrowse link
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 located_in ISS
ISO
GO_REF:0000024
(PMID:21148482)
UniProt
RGD
PMID:21148482 GO_REF:0000024 NCBI chr13:42,745,956...42,967,091 JBrowse link
G Stx11 syntaxin 11 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:9,111,216...9,140,227 JBrowse link
G Stx12 syntaxin 12 located_in ISO
IEA
(PMID:15469992)
GO_REF:0000107
RGD
Ensembl
PMID:15469992 GO_REF:0000107 NCBI chr 5:150,347,554...150,376,426 JBrowse link
G Stx4 syntaxin 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 1:191,880,549...191,890,333 JBrowse link
G Stx6 syntaxin 6 located_in ISO (PMID:22190682) RGD PMID:22190682 NCBI chr13:67,332,329...67,378,580 JBrowse link
G Stx8 syntaxin 8 located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr10:52,655,643...52,900,048 JBrowse link
G Stxbp1 syntaxin binding protein 1 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 3:16,076,725...16,138,431 JBrowse link
G Stxbp2 syntaxin binding protein 2 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr12:6,487,265...6,498,351 JBrowse link
G Stxbp3 syntaxin binding protein 3 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 2:199,130,725...199,173,823 JBrowse link
G Stxbp4 syntaxin binding protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr10:75,798,938...75,955,817 JBrowse link
G Syt11 synaptotagmin 11 located_in ISO (PMID:25063865) RGD PMID:25063865 NCBI chr 2:176,503,845...176,530,354 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 located_in ISO (PMID:19549681) RGD PMID:19549681 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tlr9 toll-like receptor 9 located_in ISO UniProtKB:Q8VCW4 (PMID:18820679) RGD PMID:18820679 NCBI chr 8:115,743,407...115,747,523 JBrowse link
G Uvrag UV radiation resistance associated located_in ISO PR:Q9QUM4 (PMID:22493499) RGD PMID:22493499 NCBI chr 1:153,185,356...153,442,200 JBrowse link
G Vamp3 vesicle-associated membrane protein 3 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 5:161,498,109...161,508,704 JBrowse link
G Vamp4 vesicle-associated membrane protein 4 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr13:74,919,872...74,942,791 JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in ISS
ISO
PMID:15470500
(PMID:15470500)
RGD PMID:15470500 PMID:15470500 RGD:8554516 NCBI chr12:16,728,486...16,764,261 JBrowse link
G Vamp8 vesicle-associated membrane protein 8 located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 4:104,442,383...104,452,884 JBrowse link
G Vim vimentin located_in IEA
ISO
GO_REF:0000107
(PMID:19144319)
Ensembl
RGD
PMID:19144319 GO_REF:0000107 NCBI chr17:81,577,261...81,585,746 JBrowse link
G Vps26b VPS26 retromer complex component B located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 8:25,415,877...25,436,985 JBrowse link
G Was WASP actin nucleation promoting factor located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr  X:17,077,057...17,085,802 JBrowse link
G Zdhhc5 zinc finger DHHC-type palmitoyltransferase 5 located_in ISO (PMID:31649195) RGD PMID:31649195 NCBI chr 3:90,178,734...90,206,889 JBrowse link
G Zyx zyxin located_in ISO (PMID:19144319) RGD PMID:19144319 NCBI chr 4:71,236,767...71,246,553 JBrowse link
early phagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 located_in ISO (PMID:25568335) RGD PMID:25568335 NCBI chr16:2,118,503...2,166,741 JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in ISO (PMID:25568335) RGD PMID:25568335 NCBI chr 7:20,135,248...20,184,757 JBrowse link
G Pla2g5 phospholipase A2, group V located_in ISS
ISO
GO_REF:0000024
(PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065 JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in ISS
ISO
GO_REF:0000024
(PMID:25568335)
UniProt
RGD
PMID:25568335 GO_REF:0000024 NCBI chr 9:6,720,057...6,749,456 JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:68,332,360...68,334,470 JBrowse link
G Slc9a9 solute carrier family 9 member A9 located_in ISO (PMID:35716776) RGD PMID:35716776 NCBI chr 8:104,112,279...104,675,944 JBrowse link
G Snx3 sorting nexin 3 located_in ISO
ISS
(PMID:23237080)
GO_REF:0000024
RGD
UniProt
PMID:23237080 GO_REF:0000024 NCBI chr20:45,992,446...46,025,361 JBrowse link
G Syk spleen associated tyrosine kinase located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:15845454)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15845454 GO_REF:0000024 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927 JBrowse link
G Syt11 synaptotagmin 11 located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23303671), (PMID:28686317)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23303671 PMID:28686317 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354 JBrowse link
G Syt7 synaptotagmin 7 located_in ISS
ISO
GO_REF:0000024
(PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 NCBI chr 1:207,031,359...207,093,787 JBrowse link
G Tlr7 toll-like receptor 7 located_in ISO (PMID:18305481) RGD PMID:18305481 NCBI chr  X:30,644,324...30,670,796 JBrowse link
G Tlr9 toll-like receptor 9 located_in ISO (PMID:18305481) RGD PMID:18305481 NCBI chr 8:115,743,407...115,747,523 JBrowse link
G Unc13b unc-13 homolog B located_in ISO (PMID:23197834) RGD PMID:23197834 NCBI chr 5:57,288,999...57,504,110 JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator located_in ISO (PMID:18305481) RGD PMID:18305481 NCBI chr 1:201,167,388...201,178,343 JBrowse link
early phagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 located_in ISO (PMID:27219021) RGD PMID:27219021 NCBI chr 7:20,135,248...20,184,757 JBrowse link
G Mtmr4 myotubularin related protein 4 is_active_in ISO (PMID:31543504) RGD PMID:31543504 NCBI chr10:72,890,665...72,913,598 JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25568335)
UniProt
Ensembl
RGD
PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:105,246,712...105,382,973 JBrowse link
phagocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07044383.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G AABR07044397.1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Anxa3 annexin A3 located_in ISO (PMID:7526843) RGD PMID:7526843 NCBI chr14:13,031,675...13,085,678 JBrowse link
G Clec4e C-type lectin domain family 4, member E located_in
is_active_in
IEA
ISO
ISS
GO_REF:0000107
(PMID:18490740)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18490740 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:158,292,624...158,298,607 JBrowse link
G Coro1a coronin 1A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:181,295,561...181,300,566 JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 located_in ISO (PMID:10485905) RGD PMID:10485905 NCBI chr 1:185,617,469...185,696,476 JBrowse link
G Dnm2 dynamin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:28,254,344...28,336,297 JBrowse link
G ENSRNOG00000064836 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Hvcn1 hydrogen voltage-gated channel 1 located_in ISO (PMID:24415791) RGD PMID:24415791 NCBI chr12:34,341,673...34,370,010 JBrowse link
G Inpp5b inositol polyphosphate-5-phosphatase B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:136,996,766...137,061,315 JBrowse link
G Irgm immunity-related GTPase M located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IEA
ISO
GO_REF:0000107
MGI:2446573 (PMID:9670047)
Ensembl
RGD
PMID:9670047 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745 JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in
located_in
ISS
ISO
IEA
GO_REF:0000024
(PMID:37347855)
GO_REF:0000044
UniProt
RGD
PMID:37347855 GO_REF:0000024 GO_REF:0000044 NCBI chr 1:209,452,176...209,456,692 JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:127,089,508...127,140,362 JBrowse link
G Pfpl pore forming protein-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:209,412,059...209,415,339 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing located_in ISO (PMID:30612035) RGD PMID:30612035 NCBI chr 9:74,057,488...74,151,610 JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 located_in
is_active_in
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr15:24,146,854...24,150,739 JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 located_in
is_active_in
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:29378918)
GO_REF:0000033
GO_REF:0000044
UniProt
RGD
GO_Central
PMID:29378918 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 5:28,259,821...28,307,225 JBrowse link
G Rab10 RAB10, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:31,974,858...32,039,554 JBrowse link
G Rab11b RAB11B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:15,223,613...15,236,754 JBrowse link
G Rab11fip1 RAB11 family interacting protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:71,589,753...71,620,341 JBrowse link
G Rab34 RAB34, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,581,542...63,585,608 JBrowse link
G Rab43 RAB43, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:120,249,650...120,269,174 JBrowse link
G Rab5a RAB5A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:6,720,057...6,749,456 JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:68,332,360...68,334,470 JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:17,688,049...17,709,412 JBrowse link
G Rab8b RAB8B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:76,340,106...76,417,638 JBrowse link
G Rab9a RAB9A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:31,610,089...31,632,128 JBrowse link
G Rab9b RAB9B, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:100,220,897...100,231,591 JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IDA RGD PMID:18832707 RGD:9835043 NCBI chr 3:33,296,211...33,414,119 JBrowse link
G RT1-A RT1 class I, locus A located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G RT1-CE1 RT1 class I, locus 1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,555,779...3,559,487 JBrowse link
G RT1-CE10 RT1 class I, locus CE10 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,377,284...3,380,301 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,355,393...3,358,520 JBrowse link
G RT1-CE12 RT1 class I, locus CE12 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,338,907...3,342,547 JBrowse link
G RT1-CE14 RT1 class I, locus CE14 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,296,654...3,300,795 JBrowse link
G RT1-CE16 RT1 class I, locus CE16 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,261,656...3,265,548 JBrowse link
G RT1-CE2 RT1 class I, locus CE2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:3,538,452...3,541,841 JBrowse link
G Rt1-ec3 RT1 class I, locus EC3 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G RT1-O1l1 RT1 class Ib, locus O1 like 1 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,624,073...2,658,023 JBrowse link
G RT1-S2 RT1 class Ib, locus S2 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,650,233...2,651,654 JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 located_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:2,684,515...2,747,878 JBrowse link
G Slc11a1 solute carrier family 11 member 1 located_in
is_active_in
ISO
IBA
IEA
(PMID:12070036)
MGI:2446573 (PMID:11067873), (PMID:9034150), (PMID:9271100)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:9034150 PMID:9271100 PMID:11067873 PMID:12070036 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:75,957,193...75,968,115 JBrowse link
G Slc15a2 solute carrier family 15 member 2 is_active_in
located_in
ISO
IEA
(PMID:20406817)
GO_REF:0000107
RGD
Ensembl
PMID:20406817 GO_REF:0000107 NCBI chr11:77,519,565...77,548,609 JBrowse link
G Slc48a1 solute carrier family 48 member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:128,915,136...128,923,929 JBrowse link
G Slc9a9 solute carrier family 9 member A9 located_in ISO (PMID:35716776) RGD PMID:35716776 NCBI chr 8:104,112,279...104,675,944 JBrowse link
G Syt7 synaptotagmin 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:207,031,359...207,093,787 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 located_in ISO (PMID:19549681) RGD PMID:19549681 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tlr2 toll-like receptor 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:171,499,189...171,504,831 JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:16,728,486...16,764,261 JBrowse link
G Vamp9 vesicle-associated membrane protein 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:9,644,109...9,681,254 JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in ISO (PMID:17548643) RGD PMID:17548643 NCBI chr 1:194,776,559...194,789,330 JBrowse link
G Pla2g5 phospholipase A2, group V located_in ISS
ISO
GO_REF:0000024
(PMID:16407308)
UniProt
RGD
PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065 JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO
GO_REF:0000107
(PMID:23395172)
Ensembl
RGD
PMID:23395172 GO_REF:0000107 NCBI chr16:83,058,131...83,082,843 JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in ISS
ISO
GO_REF:0000024
(PMID:31537793)
UniProt
RGD
PMID:31537793 GO_REF:0000024 NCBI chr 1:209,452,176...209,456,692 JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in ISO (PMID:23395172) RGD PMID:23395172 NCBI chr 7:128,915,136...128,923,929 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      cytoplasm 12254
        cytoplasmic vesicle 2065
          endocytic vesicle 226
            phagocytic vesicle 128
              clathrin-coated phagocytic vesicle + 0
              early phagosome + 16
              pexophagosome 0
              phagocytic vesicle lumen + 0
              phagocytic vesicle membrane + 56
              phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle 14240
        membrane-bounded organelle 12805
          vesicle 2260
            intracellular vesicle 2074
              cytoplasmic vesicle 2065
                endocytic vesicle 226
                  phagocytic vesicle 128
                    clathrin-coated phagocytic vesicle + 0
                    early phagosome + 16
                    pexophagosome 0
                    phagocytic vesicle lumen + 0
                    phagocytic vesicle membrane + 56
                    phagolysosome + 5
paths to the root