Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:clathrin-coated endocytic vesicle
go back to main search page
Accession:GO:0045334 term browser browse the term
Definition:A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance.
Synonyms:xref: NIF_Subcellular:sao1243595998


show annotations for term's descendants           Sort by:
clathrin-coated endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cemip cell migration inducing hyaluronidase 1 located_in ISO
ISS
IEA		 (PMID:23509262)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:23509262 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:147,316,052...147,471,552
Ensembl chr 1:137,908,920...138,062,415 		JBrowse link
G Cltc clathrin heavy chain is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:72,014,984...72,073,308
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Cpne2 copine 2 NOT|located_in ISO (PMID:21087455) RGD PMID:21087455 NCBI chr19:10,434,277...10,472,146
Ensembl chr19:10,434,277...10,471,820 		JBrowse link
G Cpne6 copine 6 located_in ISO
IEA		 (PMID:21087455)
GO_REF:0000107		 RGD
Ensembl		 PMID:21087455 GO_REF:0000107 NCBI chr15:32,968,047...32,975,008
Ensembl chr15:28,998,293...29,005,044 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 located_in ISO
IEA		 (PMID:15814706)
GO_REF:0000107		 RGD
Ensembl		 PMID:15814706 GO_REF:0000107 NCBI chr 9:69,812,859...69,819,959
Ensembl chr 9:62,319,312...62,324,963 		JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:11925437 RGD:728683 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in
is_active_in		 ISO
IBA
IEA		 (PMID:25869669)
GO_REF:0000033
(PMID:25869668)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25869668 PMID:25869669 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:192,620,891...192,700,681
Ensembl chr 1:183,190,480...183,270,276 		JBrowse link
G Lmbrd1 LMBR1 domain containing 1 part_of
located_in		 ISS
ISO		 GO_REF:0000024
(PMID:24078630)		 UniProt
RGD		 PMID:24078630 GO_REF:0000024 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090 		JBrowse link
G Myo1e myosin IE located_in ISS
ISO		 GO_REF:0000024
(PMID:17257598)		 UniProt
RGD		 PMID:17257598 GO_REF:0000024 NCBI chr 8:79,768,828...79,961,048
Ensembl chr 8:70,887,870...71,080,169 		JBrowse link
G Myo6 myosin VI located_in ISO
IEA		 (PMID:11447109)
GO_REF:0000107		 RGD
Ensembl		 PMID:11447109 GO_REF:0000107 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Ngfr nerve growth factor receptor IDA during receptor recycling in response to NGF binding RGD PMID:17897318 RGD:5508756 NCBI chr10:81,012,077...81,030,305
Ensembl chr10:80,515,299...80,533,518 		JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in ISO
IEA		 (PMID:16950109)
GO_REF:0000107		 RGD
Ensembl		 PMID:16950109 GO_REF:0000107 NCBI chr12:46,627,302...46,642,815
Ensembl chr12:40,967,103...40,991,195 		JBrowse link
G Slc5a7 solute carrier family 5 member 7 IDA RGD PMID:15953352 RGD:9999386 NCBI chr 9:7,922,693...7,953,509
Ensembl chr 9:7,595,444...7,626,258 		JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of ISO
IEA
IBA		 (PMID:23676497)
GO_REF:0000107
GO_REF:0000117
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
UniProt
InterPro
GO_Central		 PMID:23676497 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:104,520,789...104,550,655
Ensembl chr 1:95,384,309...95,414,147 		JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of ISO
IEA
IBA
IMP		 (PMID:23676497)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
GO_REF:0000117
PMID:12086608		 RGD
Ensembl
InterPro
GO_Central
UniProt		 PMID:23676497 PMID:12086608 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:12793054 NCBI chr 1:206,081,856...206,155,146
Ensembl chr 1:196,652,337...196,725,603 		JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of ISO
IEA		 (PMID:12086608), (PMID:23676497)
GO_REF:0000107
(PMID:23676497)		 RGD
Ensembl		 PMID:12086608 PMID:23676497 GO_REF:0000107 NCBI chr10:68,596,925...68,702,547
Ensembl chr10:68,099,547...68,205,013 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of IDA
IEA
ISO
IBA		 PMID:12086608
GO_REF:0000107
(PMID:23676497)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:23676497 PMID:12086608 GO_REF:0000033 GO_REF:0000107, RGD:12793054 NCBI chr11:93,859,690...93,868,600
Ensembl chr11:80,328,041...80,364,140 		JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 part_of IDA
ISO
IEA		 (PMID:12086608)
GO_REF:0000002
PMID:2040623		 RGD
InterPro		 PMID:12086608 PMID:7593184 PMID:2040623 GO_REF:0000002, RGD:2306270, RGD:727584 NCBI chr 1:86,545,601...86,557,007
Ensembl chr 1:77,417,477...77,428,905 		JBrowse link
G Btbd8 BTB domain containing 8 located_in IDA PMID:29262337 UniProt PMID:29262337 RGD:13601995 NCBI chr14:2,410,093...2,483,114
Ensembl chr14:2,266,454...2,334,393 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO
IEA		 (PMID:17626015)
GO_REF:0000107		 RGD
Ensembl		 PMID:17626015 GO_REF:0000107 NCBI chr 5:129,274,487...129,374,856
Ensembl chr 5:124,045,926...124,146,221 		JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of ISS
ISO		 PMID:17626015
(PMID:17626015)		 RGD PMID:17626015 PMID:17626015 RGD:8554282 NCBI chr 5:122,755,216...122,963,677
Ensembl chr 5:117,537,746...117,734,575 		JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:14724281 GO_REF:0000033, RGD:2317430 NCBI chr16:7,719,953...7,722,814 JBrowse link
G Ston1 stonin 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:11,596,726...11,646,098
Ensembl chr 6:5,843,185...5,892,449 		JBrowse link
G Ston2 stonin 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:116,291,898...116,441,391
Ensembl chr 6:110,567,485...110,676,376 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 located_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,740,032...4,256,971
Ensembl chr 9:3,513,623...4,016,913 		JBrowse link
clathrin coat of endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epn2 epsin 2 IDA RGD PMID:10567358 RGD:708327 NCBI chr10:46,697,238...46,759,128
Ensembl chr10:46,197,785...46,259,642 		JBrowse link
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041		 Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr 5:63,022,046...63,059,223
Ensembl chr 5:58,245,442...58,263,472 		JBrowse link
G Cltc clathrin heavy chain located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041		 Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr10:72,014,984...72,073,308
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 located_in ISO
IEA		 (PMID:19841138)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841138 GO_REF:0000107 NCBI chr 5:100,327,111...100,345,657
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      cytoplasm 12301
        cytoplasmic vesicle 2072
          endocytic vesicle 225
            clathrin-coated endocytic vesicle 28
              Syp1 complex 0
              clathrin-coated endocytic vesicle lumen 0
              clathrin-coated endocytic vesicle membrane + 16
              clathrin-coated phagocytic vesicle + 0
Path 2
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      organelle 14293
        intracellular organelle 13882
          intracellular membrane-bounded organelle 12309
            intracellular vesicle 2081
              cytoplasmic vesicle 2072
                coated vesicle 241
                  clathrin-coated vesicle 147
                    clathrin-coated endocytic vesicle 28
                      Syp1 complex 0
                      clathrin-coated endocytic vesicle lumen 0
                      clathrin-coated endocytic vesicle membrane + 16
                      clathrin-coated phagocytic vesicle + 0
paths to the root