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ONTOLOGY REPORT - ANNOTATIONS

Term:intermediate filament organization
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Accession:GO:0045109 term browser browse the term
Definition:Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
Synonyms:exact_synonym: intermediate filament organisation


show annotations for term's descendants           Sort by:
intermediate filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001416.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:132,758,366...132,762,047 JBrowse link
G Agfg1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2182772 (PMID:14724135)		 GO_Central
RGD		 PMID:14724135 GO_REF:0000033 NCBI chr 9:84,124,845...84,182,615
Ensembl chr 9:84,125,120...84,178,128 		JBrowse link
G Bfsp1 beaded filament structural protein 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:6414994|PMID:27559293)
(PMID:27559293)		 Ensembl
UniProt
RGD		 PMID:27559293 GO_REF:0000024 GO_REF:0000107 MGI:6414994 NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337 		JBrowse link
G Bfsp2 beaded filament structural protein 2 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(MGI:6414994|PMID:27559293)		 UniProt
GO_Central
RGD		 PMID:27559293 GO_REF:0000024 GO_REF:0000033 MGI:6414994 NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399 		JBrowse link
G Des desmin involved_in ISS
ISO		 GO_REF:0000024
(PMID:24200904), (PMID:26724190)		 UniProt
RGD		 PMID:24200904 PMID:26724190 GO_REF:0000024 NCBI chr 9:76,850,979...76,858,695
Ensembl chr 9:76,850,982...76,858,699 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 involved_in ISO (PMID:10954706) RGD PMID:10954706 NCBI chr 4:5,452,683...5,556,679
Ensembl chr 4:5,452,683...5,556,659 		JBrowse link
G Dsp desmoplakin involved_in ISO (MGI:3723417|PMID:16917092)
(PMID:16917092)		 RGD PMID:16917092 MGI:3723417 NCBI chr17:26,623,602...26,671,692
Ensembl chr17:26,623,588...26,671,800 		JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (PMID:15671067), (PMID:23398049)
(MGI:3805230|PMID:18285451), (MGI:5805359|PMID:25617501)		 RGD PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501 MGI:3805230 MGI:5805359 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159 		JBrowse link
G Flg filaggrin acts_upstream_of_or_within ISO (PMID:6170061) RGD PMID:6170061 NCBI chr 2:178,884,793...178,912,986 JBrowse link
G Gfap glial fibrillary acidic protein involved_in
acts_upstream_of_or_within		 ISO
ISS
IBA		 (PMID:15732097)
GO_REF:0000024
GO_REF:0000033
MGI:1857176|MGI:98932 (PMID:11487638), (PMID:8692820)		 RGD
UniProt
GO_Central		 PMID:8692820 PMID:11487638 PMID:15732097 GO_REF:0000024 GO_REF:0000033 NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589 		JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330 		JBrowse link
G Ka11 type I keratin KA11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,161,424...85,164,737
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Klhl24 kelch-like family member 24 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27889062)		 UniProt
Ensembl
RGD		 PMID:27889062 GO_REF:0000024 GO_REF:0000107 NCBI chr11:80,843,621...80,877,649
Ensembl chr11:80,846,755...80,877,636 		JBrowse link
G Krt1 keratin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,976,618...132,981,844
Ensembl chr 7:132,976,620...132,981,844 		JBrowse link
G Krt10 keratin 10 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:96699 (PMID:24751727)		 GO_Central
RGD		 PMID:24751727 GO_REF:0000033 NCBI chr10:84,338,695...84,343,279
Ensembl chr10:84,338,706...84,343,701 		JBrowse link
G Krt12 keratin 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045 		JBrowse link
G Krt13 keratin 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,051,887...85,056,099
Ensembl chr10:85,051,889...85,056,084 		JBrowse link
G Krt14 keratin 14 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,137,786...85,142,054
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Krt15 keratin 15 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,066,797...85,070,614
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Krt16 keratin 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,168,357...85,171,816
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Krt17 keratin 17 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1100845|MGI:1333768 (PMID:15601842)		 GO_Central
RGD		 PMID:15601842 GO_REF:0000033 NCBI chr10:85,178,673...85,183,392
Ensembl chr10:85,178,675...85,183,392 		JBrowse link
G Krt19 keratin 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,075,835...85,080,552
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Krt2 keratin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:4363845 (PMID:24751727)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:24751727 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:132,940,879...132,948,031
Ensembl chr 7:132,940,862...132,947,963 		JBrowse link
G Krt20 keratin 20 involved_in IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:12857878)
GO_REF:0000033
(MGI:3759340|PMID:12857878)
GO_REF:0000024		 Ensembl
RGD
GO_Central
UniProt		 PMID:12857878 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:3759340 NCBI chr10:84,384,790...84,394,125
Ensembl chr10:84,384,802...84,394,107 		JBrowse link
G Krt23 keratin 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,434,445...84,450,773
Ensembl chr10:84,434,380...84,450,983 		JBrowse link
G Krt24 keratin 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,232,163...84,237,299
Ensembl chr10:84,232,164...84,237,299 		JBrowse link
G Krt25 keratin 25 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:3707007 (PMID:17920809)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:17920809 GO_REF:0000033 GO_REF:0000107 NCBI chr10:84,267,399...84,275,025
Ensembl chr10:84,267,399...84,274,965 		JBrowse link
G Krt26 keratin 26 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,280,965...84,295,575
Ensembl chr10:84,281,162...84,292,466 		JBrowse link
G Krt27 keratin 27 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,298,684...84,303,967
Ensembl chr10:84,298,508...84,303,967 		JBrowse link
G Krt28 keratin 28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,318,352...84,328,693
Ensembl chr10:84,318,543...84,328,643 		JBrowse link
G Krt31 keratin 31 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,979,393...84,982,898
Ensembl chr10:84,979,352...84,982,832 		JBrowse link
G Krt32 keratin 32 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,013,551...85,020,578
Ensembl chr10:85,013,554...85,020,534 		JBrowse link
G Krt33a keratin 33A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,942,584...84,947,544
Ensembl chr10:84,942,573...84,947,478 		JBrowse link
G Krt33b keratin 33B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,955,838...84,961,673
Ensembl chr10:84,955,841...84,961,673 		JBrowse link
G Krt34 keratin 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,969,988...84,974,098
Ensembl chr10:84,970,017...84,974,040 		JBrowse link
G Krt35 keratin 35 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,026,171...85,029,568
Ensembl chr10:85,026,171...85,029,568 		JBrowse link
G Krt36 keratin 36 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,036,379...85,040,003
Ensembl chr10:85,036,594...85,039,959 		JBrowse link
G Krt39 keratin 39 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,473,946...84,480,552
Ensembl chr10:84,473,946...84,480,552 		JBrowse link
G Krt4 keratin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,046,067...133,052,027
Ensembl chr 7:133,046,515...133,052,019 		JBrowse link
G Krt40 keratin 40 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,496,470...84,502,756
Ensembl chr10:84,496,730...84,502,751 		JBrowse link
G Krt42 keratin 42 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,185,186...85,246,520
Ensembl chr10:85,185,181...85,192,595 		JBrowse link
G Krt5 keratin 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,846,132...132,851,861
Ensembl chr 7:132,846,136...132,851,850 		JBrowse link
G Krt6c keratin 6c involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,799,608...132,804,045
Ensembl chr 7:132,799,616...132,804,045 		JBrowse link
G Krt7 keratin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,528,881...132,545,052
Ensembl chr 7:132,528,895...132,545,052 		JBrowse link
G Krt71 keratin 71 involved_in ISO
IBA		 (PMID:22592156)
GO_REF:0000033		 RGD
GO_Central		 PMID:22592156 GO_REF:0000033 NCBI chr 7:132,873,532...132,898,975
Ensembl chr 7:132,873,540...132,882,325 		JBrowse link
G Krt72 keratin 72 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,910,379...132,920,844
Ensembl chr 7:132,910,613...132,920,783 		JBrowse link
G Krt73 keratin 73 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,927,812...132,936,323
Ensembl chr 7:132,928,256...132,936,280 		JBrowse link
G Krt75 keratin 75 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,687,101...132,697,360
Ensembl chr 7:132,688,237...132,697,345 		JBrowse link
G Krt76 keratin 76 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496 		JBrowse link
G Krt77 keratin 77 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,989,727...133,002,087
Ensembl chr 7:132,989,717...133,002,101 		JBrowse link
G Krt78 keratin 78 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,074,193...133,081,536
Ensembl chr 7:133,074,215...133,082,021 		JBrowse link
G Krt79 keratin 79 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,056,710...133,067,750
Ensembl chr 7:133,056,709...133,067,705 		JBrowse link
G Krt80 keratin 80 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,463,216...132,485,134
Ensembl chr 7:132,463,218...132,485,508 		JBrowse link
G Krt81 keratin 81 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,577,112...132,582,238
Ensembl chr 7:132,576,492...132,582,170 		JBrowse link
G Krt82 keratin 82 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,665,506...132,675,362
Ensembl chr 7:132,665,292...132,675,489 		JBrowse link
G Krt83 keratin 83 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,604,180...132,610,869
Ensembl chr 7:132,604,128...132,610,799 		JBrowse link
G Krt84 keratin 84 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,649,064...132,656,885
Ensembl chr 7:132,649,061...132,656,874 		JBrowse link
G Krt85 keratin 85 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,630,184...132,637,061
Ensembl chr 7:132,630,058...132,637,049 		JBrowse link
G Krt86 keratin 86 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,591,489...132,598,142
Ensembl chr 7:132,591,545...132,598,021 		JBrowse link
G Krt87 keratin 87 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,547,388...132,555,005
Ensembl chr 7:132,548,141...132,554,978 		JBrowse link
G Krt9 keratin 9 involved_in ISO
IBA
IEA
ISS		 (PMID:10218578)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:10218578 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:85,120,962...85,127,228
Ensembl chr10:85,122,424...85,127,228 		JBrowse link
G Krt90 keratin 90 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,677,994...132,686,634
Ensembl chr 7:132,677,751...132,686,759 		JBrowse link
G Mtm1 myotubularin 1 involved_in ISO
ISS		 (PMID:21135508)
GO_REF:0000024		 RGD
UniProt		 PMID:21135508 GO_REF:0000024 NCBI chr 6:488,923...506,882
Ensembl chr 6:488,969...506,860 		JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within		 ISO (PMID:12432080), (PMID:17052987)
(PMID:2121744), (PMID:7946341)		 RGD PMID:2121744 PMID:7946341 PMID:12432080 PMID:17052987 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793 		JBrowse link
G Plec plectin involved_in IEA
ISO		 GO_REF:0000107
MGI:3721885|MGI:3799314|MGI:3799315 (PMID:18490514), (PMID:18541706), (PMID:24487589), (PMID:26487297), (PMID:26519478)		 Ensembl
RGD		 PMID:18490514 PMID:18541706 PMID:24487589 PMID:26487297 PMID:26519478 GO_REF:0000107 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861186 (PMID:11171399)		 Ensembl
RGD		 PMID:11171399 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Tchh trichohyalin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:12853460)		 GO_Central
RGD		 PMID:12853460 GO_REF:0000033 NCBI chr 2:179,103,660...179,112,014
Ensembl chr 2:179,109,609...179,110,985
Ensembl chr 2:179,109,609...179,110,985 		JBrowse link
G Vim vimentin involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:27559293)
MGI:95697 (PMID:11487638)
GO_REF:0000033
(MGI:6414994|PMID:27559293)
GO_REF:0000024		 Ensembl
RGD
GO_Central
UniProt		 PMID:11487638 PMID:27559293 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6414994 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbln bublin coiled coil protein involved_in ISO (PMID:33857431) RGD PMID:33857431 NCBI chr 3:15,674,577...15,677,322
Ensembl chr 3:15,674,580...15,677,374 		JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (MGI:5816446|PMID:20926261) RGD PMID:20926261 MGI:5816446 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159 		JBrowse link
G Krt14 keratin 14 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11724817)		 UniProt
RGD		 PMID:11724817 GO_REF:0000024 NCBI chr10:85,137,786...85,142,054
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G Nefh neurofilament heavy chain involved_in
acts_upstream_of_or_within		 IGI
IBA
ISO		 PMID:11034913
GO_REF:0000033
MGI:97313|MGI:97314 (PMID:10461886)		 GO_Central
RGD		 PMID:10461886 PMID:11034913 GO_REF:0000033, RGD:8554743 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351 		JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within		 ISO UniProtKB:P16884 (MGI:5553249|PMID:11034913)
MGI:97309|MGI:97314 (PMID:10461886)
UniProtKB:P16884 (PMID:11034913)		 RGD PMID:10461886 PMID:11034913 MGI:5553249 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793 		JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO MGI:97309|MGI:97313 (PMID:10461886) RGD PMID:10461886 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755 		JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:10852826) RGD PMID:10852826 NCBI chr13:47,309,607...47,357,432
Ensembl chr13:47,309,614...47,357,465 		JBrowse link
G Pkp2 plakophilin 2 involved_in ISO
IBA		 (PMID:18474624)
GO_REF:0000033		 RGD
GO_Central		 PMID:18474624 GO_REF:0000033 NCBI chr11:84,661,783...84,727,730
Ensembl chr11:84,661,783...84,727,730 		JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy chain involved_in ISO (PMID:7536898) RGD PMID:7536898 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351 		JBrowse link
G Nefl neurofilament light chain involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:12432080), (PMID:15857389)		 GO_Central
RGD		 PMID:12432080 PMID:15857389 PMID:7721944 GO_REF:0000033, RGD:9743935 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793 		JBrowse link
G Nefm neurofilament medium chain involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:7721944 GO_REF:0000033, RGD:9743935 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      intermediate filament-based process 94
        intermediate filament cytoskeleton organization 93
          intermediate filament organization 73
            intermediate filament bundle assembly + 8
Path 2
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      cellular component organization or biogenesis 7062
        cellular component organization 6811
          organelle organization 3688
            cytoskeleton organization 1535
              intermediate filament cytoskeleton organization 93
                intermediate filament organization 73
                  intermediate filament bundle assembly + 8
paths to the root