ONTOLOGY REPORT - ANNOTATIONS
Term: T cell selection
Accession: GO:0045058
browse the term
Definition: The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation.
Synonyms: exact_synonym: T lymphocyte selection
xref: Wikipedia:Thymocyte
G
Cd4
Cd4 molecule
involved_in
ISO IEA ISS
(PMID:9551897) GO_REF:0000107
RGD Ensembl
PMID:9551897 PMID:9551897
GO_REF:0000107, RGD:8554348
NCBI chr 4:159,355,147...159,381,636
Ensembl chr 4:157,668,878...157,695,191
G
Rhoa
ras homolog family member A
involved_in
ISO
(PMID:25398325)
RGD
PMID:25398325
NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:108,991,954...109,025,746
G
Syk
spleen associated tyrosine kinase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:99613 (PMID:9275205)
Ensembl RGD
PMID:9275205
GO_REF:0000107
NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410
G
Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
MGI:99515 (PMID:9275205)
RGD
PMID:9275205
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
G
Braf
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
MGI:1857579 (PMID:18228248)
RGD
PMID:18228248
NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
G
Cyld
CYLD lysine 63 deubiquitinase
acts_upstream_of_or_within
ISO
MGI:3664438 (PMID:16501569)
RGD
PMID:16501569
NCBI chr19:34,487,491...34,547,311
Ensembl chr19:18,314,019...18,373,658
G
Shh
sonic hedgehog signaling molecule
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:17227833) GO_REF:0000107
UniProt RGD Ensembl
PMID:17227833
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Ctsl
cathepsin L
involved_in
ISS ISO
GO_REF:0000024 (PMID:9545226)
UniProt RGD
PMID:9545226
GO_REF:0000024
NCBI chr17:770,104...776,266
Ensembl chr17:764,309...770,548
G
Tox
thymocyte selection-associated high mobility group box
involved_in
ISO
(PMID:18195075)
RGD
PMID:18195075
NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
G
Tox
thymocyte selection-associated high mobility group box
involved_in
ISO
(PMID:18195075)
RGD
PMID:18195075
NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
G
Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156165 (PMID:8170972)
Ensembl RGD
PMID:8170972
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
G
Tox
thymocyte selection-associated high mobility group box
involved_in
ISO
(PMID:11850626), (PMID:15078895)
RGD
PMID:11850626 PMID:15078895
NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
G
Btnl3
butyrophilin-like 3
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr20:4,474,056...4,489,024
Ensembl chr20:4,474,056...4,489,024
G
Il15
interleukin 15
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2136897 (PMID:10704459)
Ensembl RGD
PMID:10704459
GO_REF:0000107
NCBI chr19:42,536,160...42,611,349
Ensembl chr19:25,640,251...25,706,820
G
Ptpn2
protein tyrosine phosphatase, non-receptor type 2
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:22080863) GO_REF:0000107
UniProt RGD Ensembl
PMID:22080863
GO_REF:0000024 GO_REF:0000107
NCBI chr18:63,498,890...63,564,571
Ensembl chr18:61,229,014...61,294,627
G
Cd69
Cd69 molecule
involved_in
ISO
(PMID:24752896)
RGD
PMID:24752896
NCBI chr 4:164,411,485...164,419,403
Ensembl chr 4:162,725,446...162,733,542
G
Jak3
Janus kinase 3
involved_in
ISO IEA
(PMID:20696842) GO_REF:0000107
RGD Ensembl
PMID:20696842
GO_REF:0000107
NCBI chr16:18,418,807...18,432,515
Ensembl chr16:18,386,405...18,398,536
G
Lgals1
galectin 1
involved_in
ISO IEA
(PMID:24752896) GO_REF:0000107
RGD Ensembl
PMID:24752896
GO_REF:0000107
NCBI chr 7:112,365,695...112,368,801
Ensembl chr 7:110,481,392...110,488,345
G
Loxl3
lysyl oxidase-like 3
involved_in
ISO
(PMID:28065600)
RGD
PMID:28065600
NCBI chr 4:117,098,358...117,114,673
Ensembl chr 4:115,540,685...115,557,466
G
Stat5a
signal transducer and activator of transcription 5A
involved_in
ISO IEA
(PMID:20696842) GO_REF:0000107
RGD Ensembl
PMID:20696842
GO_REF:0000107
NCBI chr10:86,285,859...86,310,187
Ensembl chr10:85,785,537...85,809,866
G
Tbx21
T-box transcription factor 21
involved_in
ISO
(PMID:21151104)
RGD
PMID:21151104
NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
G
Tnfsf18
TNF superfamily member 18
involved_in
ISO
(PMID:24107315)
RGD
PMID:24107315
NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169
G
Themis
thymocyte selection associated
involved_in
ISO
(PMID:19597498), (PMID:19597499)
RGD
PMID:19597498 PMID:19597499
NCBI chr 1:18,251,136...18,483,851
Ensembl chr 1:16,432,631...16,664,329
G
Aire
autoimmune regulator
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1277186 (PMID:23382543)
GO_Central RGD
PMID:23382543
GO_REF:0000033
NCBI chr20:10,635,775...10,650,709
Ensembl chr20:10,636,123...10,651,060
G
Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1338803|MGI:3612279 (PMID:23382543)
Ensembl RGD
PMID:23382543
GO_REF:0000107
NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
G
Ccr7
C-C motif chemokine receptor 7
involved_in
ISO
(PMID:17785582)
RGD
PMID:17785582
NCBI chr10:84,594,399...84,604,514
Ensembl chr10:84,097,381...84,108,309
G
Cd28
Cd28 molecule
acts_upstream_of_or_within
ISO
MGI:1857150 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685
G
Cd3e
CD3 epsilon subunit of T-cell receptor complex
acts_upstream_of_or_within
ISO
(PMID:7630421)
RGD
PMID:7630421
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
G
Cd74
CD74 molecule
acts_upstream_of_or_within
ISO
MGI:1927205 (PMID:7679955)
RGD
PMID:7679955
NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003
G
Dock2
dedicator of cytokinesis 2
acts_upstream_of_or_within
ISO
MGI:2152031 (PMID:12871644)
RGD
PMID:12871644
NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
G
Fas
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
MGI:1856334 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591
G
Gli3
GLI family zinc finger 3
involved_in
ISO
(PMID:19667090)
RGD
PMID:19667090
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
G
Mink1
misshapen-like kinase 1
acts_upstream_of_or_within
ISO
(PMID:15608642)
RGD
PMID:15608642
NCBI chr10:55,776,879...55,829,406
Ensembl chr10:55,278,391...55,330,782
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:1857277 (PMID:8666928)
RGD
PMID:8666928
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
G
Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:17227833) GO_REF:0000024
Ensembl RGD UniProt
PMID:17227833
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Spn
sialophorin
acts_upstream_of_or_within
ISO
MGI:1857246 (PMID:10429671)
RGD
PMID:10429671
NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
G
Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
MGI:2677447 (PMID:7630421)
RGD
PMID:7630421
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
G
Brd2
bromodomain containing 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:28262505)
UniProt RGD
PMID:28262505
GO_REF:0000024
NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,151...4,735,388
G
Brd4
bromodomain containing 4
involved_in
ISO
(PMID:28262505)
RGD
PMID:28262505
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,216,446...11,295,539
G
Ep300
E1A binding protein p300
involved_in
ISO
(PMID:28262505)
RGD
PMID:28262505
NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
G
Il23a
interleukin 23 subunit alpha
involved_in
IBA ISO
GO_REF:0000033 (PMID:19501566)
GO_Central RGD
PMID:19501566
GO_REF:0000033
NCBI chr 7:1,306,320...1,308,434
Ensembl chr 7:721,809...723,923
G
Opa1
OPA1, mitochondrial dynamin like GTPase
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:36171294)
UniProt Ensembl RGD
PMID:36171294
GO_REF:0000024 GO_REF:0000107
NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109
G
Bcl11b
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
MGI:3767620 (PMID:17998389)
RGD
PMID:17998389
NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
G
Braf
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
MGI:3711006 (PMID:23334952)
RGD
PMID:23334952
NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463
G
Themis
thymocyte selection associated
involved_in
ISO
(PMID:19597497), (PMID:19597498), (PMID:19597499), (PMID:19805304)
RGD
PMID:19597497 PMID:19597498 PMID:19597499 PMID:19805304
NCBI chr 1:18,251,136...18,483,851
Ensembl chr 1:16,432,631...16,664,329
G
Cd1d1
CD1d1 molecule
acts_upstream_of_or_within
ISO
MGI:2180711 (PMID:9133426)
RGD
PMID:9133426
NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:172,423,582...172,427,089
G
Cd3d
CD3 delta subunit of T-cell receptor complex
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:9135151) GO_REF:0000033
UniProt RGD GO_Central
PMID:9135151
GO_REF:0000024 GO_REF:0000033
NCBI chr 8:54,184,573...54,190,112
Ensembl chr 8:45,288,749...45,301,809
G
Cd3e
CD3 epsilon subunit of T-cell receptor complex
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
G
Cd3g
CD3 gamma subunit of T-cell receptor complex
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:54,177,572...54,184,087
Ensembl chr 8:45,281,204...45,287,147
G
Cd74
CD74 molecule
acts_upstream_of_or_within
ISO
MGI:1927205|MGI:1927530 (PMID:7679955), (PMID:8598040), (PMID:9432982)
RGD
PMID:7679955 PMID:8598040 PMID:9432982
NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003
G
Dock2
dedicator of cytokinesis 2
acts_upstream_of_or_within
ISO
MGI:2152031 (PMID:12871644)
RGD
PMID:12871644
NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
G
Itpkb
inositol-trisphosphate 3-kinase B
acts_upstream_of_or_within
ISO
MGI:3039799 (PMID:15064401)
RGD
PMID:15064401
NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
G
Nfatc3
nuclear factor of activated T-cells 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:17579027)
UniProt RGD
PMID:17579027
GO_REF:0000024
NCBI chr19:50,870,464...50,944,992
Ensembl chr19:33,960,852...34,035,150
G
Ptprc
protein tyrosine phosphatase, receptor type, C
acts_upstream_of_or_within
ISO
MGI:1857277 (PMID:8666928)
RGD
PMID:8666928
NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
G
RT1-DMa
RT1 class II, locus DMa
acts_upstream_of_or_within
ISO
MGI:1861933|MGI:2384509|MGI:2652160 (PMID:8598040), (PMID:8598041), (PMID:8638109), (PMID:9432982)
RGD
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982
NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432
G
Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:17227833) GO_REF:0000024
Ensembl RGD UniProt
PMID:17227833
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
G
Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:2449947|MGI:3046779 (PMID:21098124)
RGD
PMID:21098124
NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733
G
Stk11
serine/threonine kinase 11
acts_upstream_of_or_within
ISO
MGI:2386448|MGI:2387402|MGI:3054844 (PMID:21487392)
RGD
PMID:21487392
NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:9,575,269...9,591,315
G
Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
(PMID:7630421) MGI:2677447 (PMID:7630421)
RGD
PMID:7630421
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
G
Foxn1
forkhead box N1
involved_in
ISO
(PMID:24184560)
RGD
PMID:24184560
NCBI chr10:63,749,461...63,778,468
Ensembl chr10:63,251,400...63,273,710
G
Tox
thymocyte selection-associated high mobility group box
involved_in
ISO
(PMID:18195075)
RGD
PMID:18195075
NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272
G
Il4
interleukin 4
acts_upstream_of_or_within
ISO
MGI:103034 (PMID:20706986)
RGD
PMID:20706986
NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
G
Mtor
mechanistic target of rapamycin kinase
involved_in
IEA ISO
GO_REF:0000107 (PMID:26410627)
Ensembl RGD
PMID:26410627
GO_REF:0000107
NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
G
Spn
sialophorin
involved_in
ISO ISS
(PMID:18036228) GO_REF:0000024
RGD UniProt
PMID:18036228
GO_REF:0000024
NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
G
Stat6
signal transducer and activator of transcription 6
acts_upstream_of_or_within
ISO
MGI:96556 (PMID:20706986)
RGD
PMID:20706986
NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
G
Tbx21
T-box transcription factor 21
involved_in
ISO
(PMID:10761931)
RGD
PMID:10761931
NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
G
Batf
basic leucine zipper ATF-like transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:19578362), (PMID:22983707)
UniProt RGD
PMID:19578362 PMID:22983707
GO_REF:0000024
NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
G
Il6
interleukin 6
involved_in
ISS ISO
GO_REF:0000024 (PMID:16990136), (PMID:27893700)
UniProt RGD
PMID:16990136 PMID:27893700
GO_REF:0000024
NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
G
Il6r
interleukin 6 receptor
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:27893700)
UniProt Ensembl RGD
PMID:27893700
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:177,582,020...177,646,705
Ensembl chr 2:175,298,686...175,347,536
G
Irf4
interferon regulatory factor 4
involved_in
ISO
(PMID:22983707)
RGD
PMID:22983707
NCBI chr17:33,930,460...33,948,842
Ensembl chr17:33,721,811...33,740,070
G
Ly9
lymphocyte antigen 9
involved_in
ISO
(PMID:22184727)
RGD
PMID:22184727
NCBI chr13:86,610,762...86,633,314
Ensembl chr13:84,079,458...84,100,823
G
Otud5
OTU deubiquitinase 5
acts_upstream_of_or_within
ISO
MGI:2386448|MGI:5752247 (PMID:25470037)
RGD
PMID:25470037
NCBI chr X:17,296,750...17,331,257
Ensembl chr X:14,626,164...14,659,573
G
Slamf6
SLAM family member 6
involved_in
ISO
(PMID:22184727)
RGD
PMID:22184727
NCBI chr13:86,916,956...86,937,697
Ensembl chr13:84,383,742...84,405,300
G
Stat3
signal transducer and activator of transcription 3
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:28065600) GO_REF:0000107
UniProt RGD Ensembl
PMID:28065600
GO_REF:0000024 GO_REF:0000107
NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
G
Card11
caspase recruitment domain family, member 11
acts_upstream_of_or_within
ISO
MGI:3039682 (PMID:12867038)
RGD
PMID:12867038
NCBI chr12:13,621,140...13,758,115
Ensembl chr12:13,621,087...13,758,112
G
Gata3
GATA binding protein 3
acts_upstream_of_or_within
ISO
MGI:2683927 (PMID:14670303)
RGD
PMID:14670303
NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391
G
Itpkb
inositol-trisphosphate 3-kinase B
acts_upstream_of_or_within
ISO
MGI:2680720 (PMID:14517551)
RGD
PMID:14517551
NCBI chr13:94,601,072...94,696,180
Ensembl chr13:92,069,216...92,162,004
G
Jag2
jagged canonical Notch ligand 2
involved_in
ISS IEA ISO
PMID:10383933 GO_REF:0000107 (PMID:10383933)
Ensembl RGD
PMID:10383933 PMID:10383933
GO_REF:0000107, RGD:8553281
NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818
G
Zap70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within
ISO
MGI:2677447|MGI:3526403 (PMID:9208839)
RGD
PMID:9208839
NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:38,989,750...39,011,700
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all