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ONTOLOGY REPORT - ANNOTATIONS


Term:T cell selection
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Accession:GO:0045058 term browser browse the term
Definition:The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation.
Synonyms:exact_synonym: T lymphocyte selection
 xref: Wikipedia:Thymocyte



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T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD1D CD1d molecule involved_in TAS (PMID:14500461) UniProt PMID:14500461 NCBI chr 1:158,178,030...158,186,427
Ensembl chr 1:158,178,030...158,186,427
JBrowse link
G CD4 CD4 molecule involved_in IDA (PMID:9551897) UniProt PMID:9551897 NCBI chr12:6,789,528...6,820,799
Ensembl chr12:6,786,858...6,820,799
JBrowse link
G CD74 CD74 molecule involved_in NAS (PMID:10981873) UniProt PMID:10981873 NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
JBrowse link
beta selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHOA ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,359,145...49,411,976
Ensembl chr 3:49,359,139...49,412,998
JBrowse link
G SYK spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205) Ensembl
MGI
PMID:9275205 GO_REF:0000107 NCBI chr 9:90,801,600...90,898,549
Ensembl chr 9:90,801,787...90,898,549
JBrowse link
G ZAP70 zeta chain of T cell receptor associated protein kinase 70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205) Ensembl
MGI
PMID:9275205 GO_REF:0000107 NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
JBrowse link
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRAF B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18228248) Ensembl
MGI
PMID:18228248 GO_REF:0000107 NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
JBrowse link
G CYLD CYLD lysine 63 deubiquitinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16501569) Ensembl
MGI
PMID:16501569 GO_REF:0000107 NCBI chr16:50,742,086...50,801,935
Ensembl chr16:50,742,050...50,801,935
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA
IDA
(PMID:17227833) Ensembl
BHF-UCL
PMID:17227833 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSL cathepsin L involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:87,726,119...87,731,469
Ensembl chr 9:87,724,051...87,731,469
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP3 forkhead box P3 involved_in TAS (PMID:18368049) UniProt PMID:18368049 NCBI chr  X:49,250,438...49,264,710
Ensembl chr  X:49,250,438...49,264,800
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8170972) Ensembl
MGI
PMID:8170972 GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
JBrowse link
extrathymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BTN3A2 butyrophilin subfamily 3 member A2 involved_in ISO (PMID:27641500) MGI PMID:27641500 NCBI chr 6:26,365,169...26,378,320
Ensembl chr 6:26,365,159...26,378,320
JBrowse link
G IL15 interleukin 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10704459) Ensembl
MGI
PMID:10704459 GO_REF:0000107 NCBI chr 4:141,636,583...141,733,987
Ensembl chr 4:141,636,583...141,733,987
JBrowse link
negative regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTPN2 protein tyrosine phosphatase non-receptor type 2 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:12,785,478...12,884,237
Ensembl chr18:12,785,478...12,929,643
JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD69 CD69 molecule involved_in IDA (PMID:24752896) UniProt PMID:24752896 NCBI chr12:9,752,486...9,760,901
Ensembl chr12:9,752,486...9,760,901
JBrowse link
G JAK3 Janus kinase 3 involved_in IDA (PMID:20696842) UniProt PMID:20696842 NCBI chr19:17,824,782...17,847,982
Ensembl chr19:17,824,780...17,848,071
JBrowse link
G LGALS1 galectin 1 involved_in IDA (PMID:24752896) UniProt PMID:24752896 NCBI chr22:37,675,636...37,679,802
Ensembl chr22:37,675,636...37,679,802
JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IEA
IDA
ISS
(PMID:28065600) Ensembl
UniProt
PMID:28065600 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690
JBrowse link
G STAT5A signal transducer and activator of transcription 5A involved_in IDA (PMID:20696842) UniProt PMID:20696842 NCBI chr17:42,287,439...42,311,943
Ensembl chr17:42,287,547...42,311,943
JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
JBrowse link
G TNFSF18 TNF superfamily member 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:173,039,202...173,050,941
Ensembl chr 1:173,039,202...173,050,941
JBrowse link
negative T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THEMIS thymocyte selection associated involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:127,696,628...127,918,595
Ensembl chr 6:127,708,072...127,918,631
JBrowse link
negative thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIRE autoimmune regulator involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:23382543) Ensembl
MGI
GO_Central
PMID:23382543 GO_REF:0000033 GO_REF:0000107 NCBI chr21:44,285,876...44,298,648
Ensembl chr21:44,285,838...44,298,648
JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23382543) Ensembl
MGI
PMID:23382543 GO_REF:0000107 NCBI chr 6:106,184,476...106,325,760
Ensembl chr 6:106,045,423...106,325,791
JBrowse link
G CCR7 C-C motif chemokine receptor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:40,553,769...40,565,472
Ensembl chr17:40,551,081...40,565,472
JBrowse link
G CD28 CD28 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10429671) Ensembl
MGI
PMID:10429671 GO_REF:0000107 NCBI chr 2:203,706,482...203,738,912
Ensembl chr 2:203,706,517...203,739,756
JBrowse link
G CD3E CD3 epsilon subunit of T-cell receptor complex involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7630421) Ensembl
MGI
PMID:7630421 GO_REF:0000107 NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
JBrowse link
G CD74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7679955) Ensembl
MGI
PMID:7679955 GO_REF:0000107 NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
JBrowse link
G DOCK2 dedicator of cytokinesis 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12871644) Ensembl
MGI
PMID:12871644 GO_REF:0000107 NCBI chr 5:169,637,275...170,083,382
Ensembl chr 5:169,637,268...170,083,382
JBrowse link
G FAS Fas cell surface death receptor acts_upstream_of_or_within ISO (PMID:10429671) MGI PMID:10429671 NCBI chr10:88,964,050...89,017,059
Ensembl chr10:88,953,813...89,029,605
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100
JBrowse link
G MINK1 misshapen like kinase 1 acts_upstream_of_or_within ISO (PMID:15608642) MGI PMID:15608642 NCBI chr17:4,833,340...4,898,061
Ensembl chr17:4,833,340...4,898,061
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8666928) Ensembl
MGI
PMID:8666928 GO_REF:0000107 NCBI chr 1:198,638,713...198,757,476
Ensembl chr 1:198,638,457...198,759,342
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SPN sialophorin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10429671) Ensembl
MGI
PMID:10429671 GO_REF:0000107 NCBI chr16:29,662,963...29,670,876
Ensembl chr16:29,662,979...29,670,876
JBrowse link
G ZAP70 zeta chain of T cell receptor associated protein kinase 70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7630421) Ensembl
MGI
PMID:7630421 GO_REF:0000107 NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD2 bromodomain containing 2 involved_in IEA
IDA
(PMID:28262505) Ensembl
UniProt
PMID:28262505 GO_REF:0000107 NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505
JBrowse link
G BRD4 bromodomain containing 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545
JBrowse link
G EP300 E1A binding protein p300 involved_in IDA (PMID:28262505) UniProt PMID:28262505 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077
JBrowse link
G IL12B interleukin 12B involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,863
JBrowse link
G IL12RB1 interleukin 12 receptor subunit beta 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr19:18,058,995...18,098,816
Ensembl chr19:18,058,995...18,098,944
JBrowse link
G IL23A interleukin 23 subunit alpha involved_in IEA
IBA
ISS
Ensembl
GO_Central
BHF-UCL
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr12:56,338,884...56,340,410
Ensembl chr12:56,334,174...56,340,410
JBrowse link
G IL23R interleukin 23 receptor involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:67,138,637...67,265,903
Ensembl chr 1:67,138,907...67,259,979
JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:193,593,208...193,697,811
Ensembl chr 3:193,593,144...193,697,811
JBrowse link
positive T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL11B BCL11 transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17998389) Ensembl
MGI
PMID:17998389 GO_REF:0000107 NCBI chr14:99,169,287...99,272,197
Ensembl chr14:99,169,287...99,272,197
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23334952) Ensembl
MGI
PMID:23334952 GO_REF:0000107 NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
JBrowse link
G THEMIS thymocyte selection associated involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:127,696,628...127,918,595
Ensembl chr 6:127,708,072...127,918,631
JBrowse link
positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD1D CD1d molecule acts_upstream_of_or_within ISO (PMID:9133426) MGI PMID:9133426 NCBI chr 1:158,178,030...158,186,427
Ensembl chr 1:158,178,030...158,186,427
JBrowse link
G CD3D CD3 delta subunit of T-cell receptor complex involved_in ISS
IBA
IEA
UniProt
GO_Central
Ensembl
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:118,338,954...118,342,705
Ensembl chr11:118,334,537...118,342,705
JBrowse link
G CD3E CD3 epsilon subunit of T-cell receptor complex involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
JBrowse link
G CD3G CD3 gamma subunit of T-cell receptor complex involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:118,344,344...118,355,161
Ensembl chr11:118,344,344...118,355,161
JBrowse link
G CD74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7679955), (PMID:8598040)
(PMID:9432982)
Ensembl
MGI
PMID:7679955 PMID:8598040 PMID:9432982 GO_REF:0000107 NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
JBrowse link
G DOCK2 dedicator of cytokinesis 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12871644) Ensembl
MGI
PMID:12871644 GO_REF:0000107 NCBI chr 5:169,637,275...170,083,382
Ensembl chr 5:169,637,268...170,083,382
JBrowse link
G HLA-DMA major histocompatibility complex, class II, DM alpha acts_upstream_of_or_within ISO (PMID:8598041), (PMID:9432982)
(PMID:8638109)
(PMID:8598040)
MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 NCBI chr 6:32,948,618...32,953,097
Ensembl chr 6:32,948,613...32,969,094
JBrowse link
G ITPKB inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15064401) Ensembl
MGI
PMID:15064401 GO_REF:0000107 NCBI chr 1:226,631,690...226,739,282
Ensembl chr 1:226,631,690...226,739,323
JBrowse link
G NFATC3 nuclear factor of activated T cells 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:68,085,370...68,229,259
Ensembl chr16:68,084,751...68,229,259
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8666928) Ensembl
MGI
PMID:8666928 GO_REF:0000107 NCBI chr 1:198,638,713...198,757,476
Ensembl chr 1:198,638,457...198,759,342
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21098124) Ensembl
MGI
PMID:21098124 GO_REF:0000107 NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506
JBrowse link
G STK11 serine/threonine kinase 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21487392) Ensembl
MGI
PMID:21487392 GO_REF:0000107 NCBI chr19:1,205,778...1,228,431
Ensembl chr19:1,177,558...1,228,431
JBrowse link
G ZAP70 zeta chain of T cell receptor associated protein kinase 70 acts_upstream_of_or_within
involved_in
IDA
IEA
(PMID:7630421) MGI
Ensembl
PMID:7630421 GO_REF:0000107 NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
JBrowse link
regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXN1 forkhead box N1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,506,348...28,538,900
Ensembl chr17:28,506,243...28,538,900
JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
JBrowse link
T-helper 1 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL4 interleukin 4 acts_upstream_of_or_within ISO (PMID:20706986) MGI PMID:20706986 NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678
JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556
JBrowse link
G SPN sialophorin involved_in IDA (PMID:18036228) UniProt PMID:18036228 NCBI chr16:29,662,963...29,670,876
Ensembl chr16:29,662,979...29,670,876
JBrowse link
G STAT6 signal transducer and activator of transcription 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20706986) Ensembl
MGI
PMID:20706986 GO_REF:0000107 NCBI chr12:57,095,408...57,111,362
Ensembl chr12:57,095,408...57,132,139
JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
JBrowse link
T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BATF basic leucine zipper ATF-like transcription factor involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr14:75,522,469...75,546,992
Ensembl chr14:75,522,455...75,546,993
JBrowse link
G IL6 interleukin 6 involved_in ISS (PMID:27893700) UniProt PMID:27893700 GO_REF:0000024 NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G IL6R interleukin 6 receptor involved_in IEA
ISS
(PMID:27893700) Ensembl
UniProt
PMID:27893700 GO_REF:0000107 NCBI chr 1:154,405,343...154,469,450
Ensembl chr 1:154,405,193...154,469,450
JBrowse link
G IL6ST interleukin 6 cytokine family signal transducer involved_in ISS (PMID:27893700) UniProt PMID:27893700 NCBI chr 5:55,935,095...55,994,963
Ensembl chr 5:55,935,095...55,995,022
JBrowse link
G IRF4 interferon regulatory factor 4 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:391,752...411,443
Ensembl chr 6:391,739...411,443
JBrowse link
G JAK1 Janus kinase 1 involved_in TAS (PMID:27893700) UniProt PMID:27893700 NCBI chr 1:64,833,229...65,067,746
Ensembl chr 1:64,833,223...65,067,754
JBrowse link
G LY9 lymphocyte antigen 9 involved_in IDA (PMID:22184727) UniProt PMID:22184727 NCBI chr 1:160,796,174...160,828,255
Ensembl chr 1:160,796,074...160,828,483
JBrowse link
G OTUD5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chr  X:48,922,024...48,958,381
Ensembl chr  X:48,922,024...48,958,386
JBrowse link
G SLAMF6 SLAM family member 6 involved_in IDA (PMID:22184727) UniProt PMID:22184727 NCBI chr 1:160,485,036...160,523,255
Ensembl chr 1:160,485,030...160,523,262
JBrowse link
G SOCS3 suppressor of cytokine signaling 3 involved_in TAS (PMID:27893700) UniProt PMID:27893700 NCBI chr17:78,356,778...78,360,925
Ensembl chr17:78,356,778...78,360,077
JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568
JBrowse link
T-helper cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFPM1 zinc finger protein, FOG family member 1 involved_in IC (PMID:21646796) BHF-UCL PMID:21646796 NCBI chr16:88,451,769...88,537,031
Ensembl chr16:88,453,280...88,537,031
JBrowse link
thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARD11 caspase recruitment domain family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12867038) Ensembl
MGI
PMID:12867038 GO_REF:0000107 NCBI chr 7:2,906,142...3,043,867
Ensembl chr 7:2,906,142...3,044,228
JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14670303) Ensembl
MGI
PMID:14670303 GO_REF:0000107 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G ITPKB inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14517551) Ensembl
MGI
PMID:14517551 GO_REF:0000107 NCBI chr 1:226,631,690...226,739,282
Ensembl chr 1:226,631,690...226,739,323
JBrowse link
G JAG2 jagged canonical Notch ligand 2 involved_in IDA (PMID:10383933) UniProt PMID:10383933 NCBI chr14:105,140,995...105,168,776
Ensembl chr14:105,140,982...105,168,824
JBrowse link
G ZAP70 zeta chain of T cell receptor associated protein kinase 70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9208839) Ensembl
MGI
PMID:9208839 GO_REF:0000107 NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20484
    immune system process 3294
      T cell selection 70
        beta selection 3
        extrathymic T cell selection + 2
        negative T cell selection + 15
        positive T cell selection + 55
        thymic T cell selection + 28
Path 2
Term Annotations click to browse term
  biological_process 20484
    developmental process 7687
      cellular developmental process 5229
        cell differentiation 5228
          cell development 3477
            hemopoiesis 1173
              leukocyte differentiation 749
                mononuclear cell differentiation 615
                  lymphocyte differentiation 503
                    T cell differentiation 373
                      T cell selection 70
                        beta selection 3
                        extrathymic T cell selection + 2
                        negative T cell selection + 15
                        positive T cell selection + 55
                        thymic T cell selection + 28
paths to the root