ONTOLOGY REPORT - ANNOTATIONS
Term: T cell selection
Accession: GO:0045058
browse the term
Definition: The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation.
Synonyms: exact_synonym: T lymphocyte selection
xref: Wikipedia:Thymocyte
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CD1D
CD1d molecule
involved_in
TAS
(PMID:14500461)
UniProt
PMID:14500461
NCBI chr 1:158,178,030...158,186,427
Ensembl chr 1:158,178,030...158,186,427
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CD4
CD4 molecule
involved_in
IDA
(PMID:9551897)
UniProt
PMID:9551897
NCBI chr12:6,789,528...6,820,799
Ensembl chr12:6,786,858...6,820,799
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CD74
CD74 molecule
involved_in
NAS
(PMID:10981873)
UniProt
PMID:10981873
NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
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RHOA
ras homolog family member A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:49,359,145...49,411,976
Ensembl chr 3:49,359,139...49,412,998
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SYK
spleen associated tyrosine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr 9:90,801,600...90,898,549
Ensembl chr 9:90,801,787...90,898,549
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ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
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BRAF
B-Raf proto-oncogene, serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18228248)
Ensembl MGI
PMID:18228248
GO_REF:0000107
NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
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CYLD
CYLD lysine 63 deubiquitinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16501569)
Ensembl MGI
PMID:16501569
GO_REF:0000107
NCBI chr16:50,742,086...50,801,935
Ensembl chr16:50,742,050...50,801,935
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SHH
sonic hedgehog signaling molecule
involved_in
IEA IDA
(PMID:17227833)
Ensembl BHF-UCL
PMID:17227833
GO_REF:0000107
NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
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CTSL
cathepsin L
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 9:87,726,119...87,731,469
Ensembl chr 9:87,724,051...87,731,469
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
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FOXP3
forkhead box P3
involved_in
TAS
(PMID:18368049)
UniProt
PMID:18368049
NCBI chr X:49,250,438...49,264,710
Ensembl chr X:49,250,438...49,264,800
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TOX
thymocyte selection associated high mobility group box
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
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BCL2
BCL2 apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8170972)
Ensembl MGI
PMID:8170972
GO_REF:0000107
NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
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BTN3A2
butyrophilin subfamily 3 member A2
involved_in
ISO
(PMID:27641500)
MGI
PMID:27641500
NCBI chr 6:26,365,169...26,378,320
Ensembl chr 6:26,365,159...26,378,320
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IL15
interleukin 15
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10704459)
Ensembl MGI
PMID:10704459
GO_REF:0000107
NCBI chr 4:141,636,583...141,733,987
Ensembl chr 4:141,636,583...141,733,987
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PTPN2
protein tyrosine phosphatase non-receptor type 2
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr18:12,785,478...12,884,237
Ensembl chr18:12,785,478...12,929,643
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CD69
CD69 molecule
involved_in
IDA
(PMID:24752896)
UniProt
PMID:24752896
NCBI chr12:9,752,486...9,760,901
Ensembl chr12:9,752,486...9,760,901
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JAK3
Janus kinase 3
involved_in
IDA
(PMID:20696842)
UniProt
PMID:20696842
NCBI chr19:17,824,782...17,847,982
Ensembl chr19:17,824,780...17,848,071
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LGALS1
galectin 1
involved_in
IDA
(PMID:24752896)
UniProt
PMID:24752896
NCBI chr22:37,675,636...37,679,802
Ensembl chr22:37,675,636...37,679,802
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LOXL3
lysyl oxidase like 3
involved_in
IEA IDA ISS
(PMID:28065600)
Ensembl UniProt
PMID:28065600
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690
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STAT5A
signal transducer and activator of transcription 5A
involved_in
IDA
(PMID:20696842)
UniProt
PMID:20696842
NCBI chr17:42,287,439...42,311,943
Ensembl chr17:42,287,547...42,311,943
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TBX21
T-box transcription factor 21
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
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TNFSF18
TNF superfamily member 18
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:173,039,202...173,050,941
Ensembl chr 1:173,039,202...173,050,941
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THEMIS
thymocyte selection associated
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:127,696,628...127,918,595
Ensembl chr 6:127,708,072...127,918,631
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AIRE
autoimmune regulator
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:23382543)
Ensembl MGI GO_Central
PMID:23382543
GO_REF:0000033 GO_REF:0000107
NCBI chr21:44,285,876...44,298,648
Ensembl chr21:44,285,838...44,298,648
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ATG5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23382543)
Ensembl MGI
PMID:23382543
GO_REF:0000107
NCBI chr 6:106,184,476...106,325,760
Ensembl chr 6:106,045,423...106,325,791
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CCR7
C-C motif chemokine receptor 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:40,553,769...40,565,472
Ensembl chr17:40,551,081...40,565,472
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CD28
CD28 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429671)
Ensembl MGI
PMID:10429671
GO_REF:0000107
NCBI chr 2:203,706,482...203,738,912
Ensembl chr 2:203,706,517...203,739,756
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CD3E
CD3 epsilon subunit of T-cell receptor complex
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7630421)
Ensembl MGI
PMID:7630421
GO_REF:0000107
NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
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CD74
CD74 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7679955)
Ensembl MGI
PMID:7679955
GO_REF:0000107
NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
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DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 5:169,637,275...170,083,382
Ensembl chr 5:169,637,268...170,083,382
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FAS
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
(PMID:10429671)
MGI
PMID:10429671
NCBI chr10:88,964,050...89,017,059
Ensembl chr10:88,953,813...89,029,605
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GLI3
GLI family zinc finger 3
involved_in
IEA ISS
Ensembl BHF-UCL
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100
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MINK1
misshapen like kinase 1
acts_upstream_of_or_within
ISO
(PMID:15608642)
MGI
PMID:15608642
NCBI chr17:4,833,340...4,898,061
Ensembl chr17:4,833,340...4,898,061
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PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 1:198,638,713...198,757,476
Ensembl chr 1:198,638,457...198,759,342
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SHH
sonic hedgehog signaling molecule
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
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SPN
sialophorin
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429671)
Ensembl MGI
PMID:10429671
GO_REF:0000107
NCBI chr16:29,662,963...29,670,876
Ensembl chr16:29,662,979...29,670,876
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ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7630421)
Ensembl MGI
PMID:7630421
GO_REF:0000107
NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
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BRD2
bromodomain containing 2
involved_in
IEA IDA
(PMID:28262505)
Ensembl UniProt
PMID:28262505
GO_REF:0000107
NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505
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BRD4
bromodomain containing 4
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545
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EP300
E1A binding protein p300
involved_in
IDA
(PMID:28262505)
UniProt
PMID:28262505
NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077
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IL12B
interleukin 12B
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,863
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IL12RB1
interleukin 12 receptor subunit beta 1
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr19:18,058,995...18,098,816
Ensembl chr19:18,058,995...18,098,944
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IL23A
interleukin 23 subunit alpha
involved_in
IEA IBA ISS
Ensembl GO_Central BHF-UCL
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr12:56,338,884...56,340,410
Ensembl chr12:56,334,174...56,340,410
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IL23R
interleukin 23 receptor
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr 1:67,138,637...67,265,903
Ensembl chr 1:67,138,907...67,259,979
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OPA1
OPA1 mitochondrial dynamin like GTPase
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:193,593,208...193,697,811
Ensembl chr 3:193,593,144...193,697,811
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BCL11B
BCL11 transcription factor B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17998389)
Ensembl MGI
PMID:17998389
GO_REF:0000107
NCBI chr14:99,169,287...99,272,197
Ensembl chr14:99,169,287...99,272,197
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BRAF
B-Raf proto-oncogene, serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23334952)
Ensembl MGI
PMID:23334952
GO_REF:0000107
NCBI chr 7:140,713,328...140,924,929
Ensembl chr 7:140,719,327...140,924,929
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THEMIS
thymocyte selection associated
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:127,696,628...127,918,595
Ensembl chr 6:127,708,072...127,918,631
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CD1D
CD1d molecule
acts_upstream_of_or_within
ISO
(PMID:9133426)
MGI
PMID:9133426
NCBI chr 1:158,178,030...158,186,427
Ensembl chr 1:158,178,030...158,186,427
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CD3D
CD3 delta subunit of T-cell receptor complex
involved_in
ISS IBA IEA
UniProt GO_Central Ensembl
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr11:118,338,954...118,342,705
Ensembl chr11:118,334,537...118,342,705
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CD3E
CD3 epsilon subunit of T-cell receptor complex
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr11:118,304,730...118,316,173
Ensembl chr11:118,304,730...118,316,175
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CD3G
CD3 gamma subunit of T-cell receptor complex
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr11:118,344,344...118,355,161
Ensembl chr11:118,344,344...118,355,161
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CD74
CD74 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7679955), (PMID:8598040) (PMID:9432982)
Ensembl MGI
PMID:7679955 PMID:8598040 PMID:9432982
GO_REF:0000107
NCBI chr 5:150,401,639...150,412,910
Ensembl chr 5:150,401,637...150,412,969
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DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 5:169,637,275...170,083,382
Ensembl chr 5:169,637,268...170,083,382
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HLA-DMA
major histocompatibility complex, class II, DM alpha
acts_upstream_of_or_within
ISO
(PMID:8598041), (PMID:9432982) (PMID:8638109) (PMID:8598040)
MGI
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982
NCBI chr 6:32,948,618...32,953,097
Ensembl chr 6:32,948,613...32,969,094
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ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15064401)
Ensembl MGI
PMID:15064401
GO_REF:0000107
NCBI chr 1:226,631,690...226,739,282
Ensembl chr 1:226,631,690...226,739,323
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NFATC3
nuclear factor of activated T cells 3
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr16:68,085,370...68,229,259
Ensembl chr16:68,084,751...68,229,259
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PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 1:198,638,713...198,757,476
Ensembl chr 1:198,638,457...198,759,342
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SHH
sonic hedgehog signaling molecule
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
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SRF
serum response factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21098124)
Ensembl MGI
PMID:21098124
GO_REF:0000107
NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506
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STK11
serine/threonine kinase 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21487392)
Ensembl MGI
PMID:21487392
GO_REF:0000107
NCBI chr19:1,205,778...1,228,431
Ensembl chr19:1,177,558...1,228,431
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ZAP70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within involved_in
IDA IEA
(PMID:7630421)
MGI Ensembl
PMID:7630421
GO_REF:0000107
NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
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FOXN1
forkhead box N1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:28,506,348...28,538,900
Ensembl chr17:28,506,243...28,538,900
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TOX
thymocyte selection associated high mobility group box
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147
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IL4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:20706986)
MGI
PMID:20706986
NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678
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MTOR
mechanistic target of rapamycin kinase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556
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SPN
sialophorin
involved_in
IDA
(PMID:18036228)
UniProt
PMID:18036228
NCBI chr16:29,662,963...29,670,876
Ensembl chr16:29,662,979...29,670,876
G
STAT6
signal transducer and activator of transcription 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20706986)
Ensembl MGI
PMID:20706986
GO_REF:0000107
NCBI chr12:57,095,408...57,111,362
Ensembl chr12:57,095,408...57,132,139
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TBX21
T-box transcription factor 21
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
G
BATF
basic leucine zipper ATF-like transcription factor
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr14:75,522,469...75,546,992
Ensembl chr14:75,522,455...75,546,993
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IL6
interleukin 6
involved_in
ISS
(PMID:27893700)
UniProt
PMID:27893700
GO_REF:0000024
NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002
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IL6R
interleukin 6 receptor
involved_in
IEA ISS
(PMID:27893700)
Ensembl UniProt
PMID:27893700
GO_REF:0000107
NCBI chr 1:154,405,343...154,469,450
Ensembl chr 1:154,405,193...154,469,450
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IL6ST
interleukin 6 cytokine family signal transducer
involved_in
ISS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr 5:55,935,095...55,994,963
Ensembl chr 5:55,935,095...55,995,022
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IRF4
interferon regulatory factor 4
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:391,752...411,443
Ensembl chr 6:391,739...411,443
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JAK1
Janus kinase 1
involved_in
TAS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr 1:64,833,229...65,067,746
Ensembl chr 1:64,833,223...65,067,754
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LY9
lymphocyte antigen 9
involved_in
IDA
(PMID:22184727)
UniProt
PMID:22184727
NCBI chr 1:160,796,174...160,828,255
Ensembl chr 1:160,796,074...160,828,483
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OTUD5
OTU deubiquitinase 5
acts_upstream_of_or_within
ISO
(PMID:25470037)
MGI
PMID:25470037
NCBI chr X:48,922,024...48,958,381
Ensembl chr X:48,922,024...48,958,386
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SLAMF6
SLAM family member 6
involved_in
IDA
(PMID:22184727)
UniProt
PMID:22184727
NCBI chr 1:160,485,036...160,523,255
Ensembl chr 1:160,485,030...160,523,262
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SOCS3
suppressor of cytokine signaling 3
involved_in
TAS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr17:78,356,778...78,360,925
Ensembl chr17:78,356,778...78,360,077
G
STAT3
signal transducer and activator of transcription 3
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568
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ZFPM1
zinc finger protein, FOG family member 1
involved_in
IC
(PMID:21646796)
BHF-UCL
PMID:21646796
NCBI chr16:88,451,769...88,537,031
Ensembl chr16:88,453,280...88,537,031
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CARD11
caspase recruitment domain family member 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12867038)
Ensembl MGI
PMID:12867038
GO_REF:0000107
NCBI chr 7:2,906,142...3,043,867
Ensembl chr 7:2,906,142...3,044,228
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GATA3
GATA binding protein 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14670303)
Ensembl MGI
PMID:14670303
GO_REF:0000107
NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198
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ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14517551)
Ensembl MGI
PMID:14517551
GO_REF:0000107
NCBI chr 1:226,631,690...226,739,282
Ensembl chr 1:226,631,690...226,739,323
G
JAG2
jagged canonical Notch ligand 2
involved_in
IDA
(PMID:10383933)
UniProt
PMID:10383933
NCBI chr14:105,140,995...105,168,776
Ensembl chr14:105,140,982...105,168,824
G
ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9208839)
Ensembl MGI
PMID:9208839
GO_REF:0000107
NCBI chr 2:97,713,576...97,756,364
Ensembl chr 2:97,713,576...97,744,327
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all