ONTOLOGY REPORT - ANNOTATIONS
Term: T cell selection
Accession: GO:0045058
browse the term
Definition: The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation.
Synonyms: exact_synonym: T lymphocyte selection
xref: Wikipedia:Thymocyte
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CD4
CD4 molecule
involved_in
ISS IEA
(PMID:9551897)
UniProt Ensembl
PMID:9551897
GO_REF:0000107
NCBI chr27:38,204,003...38,250,771
Ensembl chr27:38,204,003...38,250,771
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RHOA
ras homolog family member A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
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SYK
spleen associated tyrosine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr 1:95,903,501...95,955,577
Ensembl chr 1:95,903,566...95,955,583
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ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr10:44,887,416...44,913,845
Ensembl chr10:44,887,433...44,900,071
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BRAF
B-Raf proto-oncogene, serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18228248)
Ensembl MGI
PMID:18228248
GO_REF:0000107
NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906
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CYLD
CYLD lysine 63 deubiquitinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16501569)
Ensembl MGI
PMID:16501569
GO_REF:0000107
NCBI chr 2:64,561,684...64,628,829
Ensembl chr 2:64,562,503...64,628,175
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SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
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CTSL3
cathepsin L family member 3
involved_in
ISO
(PMID:9545226)
UniProt
PMID:9545226
NCBI chr 1:72,215,774...72,219,093
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CTSV
cathepsin V
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 1:69,937,550...69,943,316
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
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BCL2
BCL2 apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8170972)
Ensembl MGI
PMID:8170972
GO_REF:0000107
NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
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IL15
interleukin 15
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10704459)
Ensembl MGI
PMID:10704459
GO_REF:0000107
NCBI chr19:1,339,607...1,364,762
Ensembl chr19:1,339,967...1,364,762
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PTPN2
protein tyrosine phosphatase non-receptor type 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:78,160,564...78,252,382
Ensembl chr 7:78,160,589...78,252,719
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CD69
CD69 molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:36,197,202...36,205,045
Ensembl chr27:36,197,175...36,204,597
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JAK3
Janus kinase 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:45,051,135...45,068,445
Ensembl chr20:45,050,526...45,072,805
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LGALS1
galectin 1
involved_in
ISO
(PMID:24752896)
UniProt
PMID:24752896
NCBI chr10:26,932,351...26,935,580
Ensembl chr10:26,932,301...26,935,646
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LOXL3
lysyl oxidase like 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:48,590,996...48,610,264
Ensembl chr17:48,591,768...48,610,392
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STAT5A
signal transducer and activator of transcription 5A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:20,616,041...20,638,523
Ensembl chr 9:20,617,151...20,638,103
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TBX21
T-box transcription factor 21
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261
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TNFSF18
TNF superfamily member 18
involved_in
ISO
(PMID:24107315)
UniProt
PMID:24107315
NCBI chr 7:25,983,064...25,994,605
Ensembl chr 7:25,963,719...25,992,801
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THEMIS
thymocyte selection associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:66,363,172...66,540,272
Ensembl chr 1:66,363,125...66,540,327
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AIRE
autoimmune regulator
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:23382543)
Ensembl GO_Central MGI
PMID:23382543
GO_REF:0000033 GO_REF:0000107
NCBI chr31:38,139,513...38,149,294
Ensembl chr31:38,139,099...38,149,296
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ATG5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23382543)
Ensembl MGI
PMID:23382543
GO_REF:0000107
NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485
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CCR7
C-C motif chemokine receptor 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:22,077,976...22,092,818
Ensembl chr 9:22,068,775...22,090,656
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CD28
CD28 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429671)
Ensembl MGI
PMID:10429671
GO_REF:0000107
NCBI chr37:12,503,849...12,536,362
Ensembl chr37:12,503,811...12,532,854
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CD3E
CD3 epsilon subunit of T-cell receptor complex
acts_upstream_of_or_within
ISO
(PMID:7630421)
MGI
PMID:7630421
NCBI chr 5:15,403,724...15,415,259
Ensembl chr 5:15,403,710...15,415,260
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CD74
CD74 molecule
acts_upstream_of_or_within
ISO
(PMID:7679955)
MGI
PMID:7679955
NCBI chr 4:58,689,745...58,698,421
Ensembl chr 4:58,689,752...58,698,151
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DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 4:41,779,950...42,177,957
Ensembl chr 4:41,780,436...42,235,177
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FAS
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
(PMID:10429671)
MGI
PMID:10429671
NCBI chr26:38,738,811...38,763,298
Ensembl chr26:38,737,611...38,763,321
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GLI3
GLI family zinc finger 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
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MINK1
misshapen like kinase 1
acts_upstream_of_or_within
ISO
(PMID:15608642)
MGI
PMID:15608642
NCBI chr 5:31,707,975...31,718,013
Ensembl chr 5:31,708,553...31,749,842
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PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 7:4,155,876...4,282,151
Ensembl chr 7:4,137,728...4,282,124
G
SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
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SPN
sialophorin
acts_upstream_of_or_within
ISO
(PMID:10429671)
MGI
PMID:10429671
NCBI chr 6:17,770,303...17,774,946
G
ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7630421)
Ensembl MGI
PMID:7630421
GO_REF:0000107
NCBI chr10:44,887,416...44,913,845
Ensembl chr10:44,887,433...44,900,071
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BRD2
bromodomain containing 2
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029
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BRD4
bromodomain containing 4
involved_in
ISO
(PMID:28262505)
UniProt
PMID:28262505
NCBI chr20:46,844,795...46,927,620
Ensembl chr20:46,891,514...46,927,608
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EP300
E1A binding protein p300
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:24,076,538...24,156,708
Ensembl chr10:24,077,971...24,156,396
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IL23A
interleukin 23 subunit alpha
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr10:635,384...640,715
Ensembl chr10:638,719...640,359
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OPA1
OPA1 mitochondrial dynamin like GTPase
involved_in
ISO
(PMID:36171294)
UniProt
PMID:36171294
NCBI chr23:52,068,123...52,154,410
Ensembl chr23:52,068,118...52,151,593
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BCL11B
BCL11 transcription factor B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17998389)
Ensembl MGI
PMID:17998389
GO_REF:0000107
NCBI chr 8:67,622,592...67,713,922
Ensembl chr 8:67,622,708...67,714,404
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BRAF
B-Raf proto-oncogene, serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23334952)
Ensembl MGI
PMID:23334952
GO_REF:0000107
NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906
G
THEMIS
thymocyte selection associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:66,363,172...66,540,272
Ensembl chr 1:66,363,125...66,540,327
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CD1D
CD1d molecule
acts_upstream_of_or_within
ISO
(PMID:9133426)
MGI
PMID:9133426
NCBI chr38:23,489,169...23,491,712
G
CD3D
CD3 delta subunit of T-cell receptor complex
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr 5:15,392,841...15,396,745
Ensembl chr 5:15,389,243...15,396,750
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CD3E
CD3 epsilon subunit of T-cell receptor complex
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 5:15,403,724...15,415,259
Ensembl chr 5:15,403,710...15,415,260
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CD3G
CD3 gamma subunit of T-cell receptor complex
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 5:15,379,788...15,391,271
Ensembl chr 5:15,380,633...15,391,214
G
CD74
CD74 molecule
acts_upstream_of_or_within
ISO
(PMID:7679955), (PMID:8598040) (PMID:9432982)
MGI
PMID:7679955 PMID:8598040 PMID:9432982
NCBI chr 4:58,689,745...58,698,421
Ensembl chr 4:58,689,752...58,698,151
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DLA-DMA
major histocompatibility complex, class II, DM alpha
acts_upstream_of_or_within
ISO
(PMID:8598041), (PMID:9432982) (PMID:8638109) (PMID:8598040)
MGI
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982
NCBI chr12:2,516,974...2,534,085
Ensembl chr12:2,503,325...2,533,990
G
DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 4:41,779,950...42,177,957
Ensembl chr 4:41,780,436...42,235,177
G
ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15064401)
Ensembl MGI
PMID:15064401
GO_REF:0000107
NCBI chr 7:38,253,257...38,346,400
Ensembl chr 7:38,253,407...38,343,345
G
NFATC3
nuclear factor of activated T cells 3
involved_in
ISO
(PMID:17579027)
UniProt
PMID:17579027
NCBI chr 5:81,294,656...81,434,256
Ensembl chr 5:81,296,214...81,434,250
G
PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 7:4,155,876...4,282,151
Ensembl chr 7:4,137,728...4,282,124
G
SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
G
SRF
serum response factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21098124)
Ensembl MGI
PMID:21098124
GO_REF:0000107
NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
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STK11
serine/threonine kinase 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21487392)
Ensembl MGI
PMID:21487392
GO_REF:0000107
NCBI chr20:57,558,966...57,579,163
Ensembl chr20:57,559,424...57,579,118
G
ZAP70
zeta chain of T cell receptor associated protein kinase 70
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:7630421)
MGI Ensembl
PMID:7630421
GO_REF:0000107
NCBI chr10:44,887,416...44,913,845
Ensembl chr10:44,887,433...44,900,071
G
FOXN1
forkhead box N1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:42,734,228...42,749,856
Ensembl chr 9:42,735,656...42,748,632
G
TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:9,542,471...9,841,759
Ensembl chr29:9,544,561...9,842,034
G
IL4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:20706986)
MGI
PMID:20706986
NCBI chr11:20,972,693...20,981,539
Ensembl chr11:20,972,690...20,981,534
G
MTOR
mechanistic target of rapamycin kinase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114
G
SPN
sialophorin
involved_in
ISO
(PMID:18036228)
UniProt
PMID:18036228
NCBI chr 6:17,770,303...17,774,946
G
STAT6
signal transducer and activator of transcription 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20706986)
Ensembl MGI
PMID:20706986
GO_REF:0000107
NCBI chr10:1,232,515...1,247,011
Ensembl chr10:1,233,691...1,247,075
G
TBX21
T-box transcription factor 21
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:24,077,752...24,086,560
Ensembl chr 9:24,077,761...24,086,261
G
BATF
basic leucine zipper ATF-like transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:48,537,036...48,561,154
G
IL6
interleukin 6
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr14:36,474,268...36,478,519
Ensembl chr14:36,473,394...36,478,519
G
IL6R
interleukin 6 receptor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:42,877,731...42,920,149
Ensembl chr 7:42,880,885...42,920,090
G
IRF4
interferon regulatory factor 4
involved_in
ISO
(PMID:22983707)
UniProt
PMID:22983707
NCBI chr35:760,367...782,314
Ensembl chr35:767,011...781,339
G
LY9
lymphocyte antigen 9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr38:21,522,898...21,554,652
Ensembl chr38:21,523,637...21,554,579
G
OTUD5
OTU deubiquitinase 5
acts_upstream_of_or_within
ISO
(PMID:25470037)
MGI
PMID:25470037
NCBI chr X:42,079,396...42,109,129
Ensembl chr X:42,081,561...42,108,612
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SLAMF6
SLAM family member 6
involved_in
ISO
(PMID:22184727)
UniProt
PMID:22184727
NCBI chr38:21,742,228...21,769,521
Ensembl chr38:21,742,301...21,764,494
G
STAT3
signal transducer and activator of transcription 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
G
CARD11
caspase recruitment domain family member 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12867038)
Ensembl MGI
PMID:12867038
GO_REF:0000107
NCBI chr 6:14,273,115...14,331,029
Ensembl chr 6:14,210,114...14,332,094
G
GATA3
GATA binding protein 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14670303)
Ensembl MGI
PMID:14670303
GO_REF:0000107
NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
G
ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14517551)
Ensembl MGI
PMID:14517551
GO_REF:0000107
NCBI chr 7:38,253,257...38,346,400
Ensembl chr 7:38,253,407...38,343,345
G
JAG2
jagged canonical Notch ligand 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:72,535,539...72,553,531
Ensembl chr 8:72,535,107...72,550,322
G
ZAP70
zeta chain of T cell receptor associated protein kinase 70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9208839)
Ensembl MGI
PMID:9208839
GO_REF:0000107
NCBI chr10:44,887,416...44,913,845
Ensembl chr10:44,887,433...44,900,071
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