ONTOLOGY REPORT - ANNOTATIONS
Term: T cell selection
Accession: GO:0045058
browse the term
Definition: The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation.
Synonyms: exact_synonym: T lymphocyte selection
xref: Wikipedia:Thymocyte
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CD4
CD4 molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:6,920,587...6,951,814
Ensembl chr12:6,834,011...6,864,204
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LOC100971372
tyrosine-protein kinase ZAP-70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr2A:101,582,567...101,613,175
Ensembl chr2A:98,613,740...98,639,088
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RHOA
ras homolog family member A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:49,282,009...49,339,887
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SYK
spleen associated tyrosine kinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9275205)
Ensembl MGI
PMID:9275205
GO_REF:0000107
NCBI chr 9:61,859,767...61,956,619
Ensembl chr 9:89,959,599...90,056,101
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BRAF
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
(PMID:18228248)
MGI
PMID:18228248
NCBI chr 7:132,651,908...132,855,422
Ensembl chr 7:145,138,510...145,327,115
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CYLD
CYLD lysine 63 deubiquitinase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16501569)
Ensembl MGI
PMID:16501569
GO_REF:0000107
NCBI chr16:31,004,393...31,064,546
Ensembl chr16:49,882,751...49,942,629
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SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
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CTSL
cathepsin L
involved_in
ISO
(PMID:9545226)
UniProt
PMID:9545226
NCBI chr 9:58,851,899...58,857,170
Ensembl chr 9:86,903,006...86,908,303
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:55,246,933...55,553,839
Ensembl chr 8:56,922,773...57,219,410
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:55,246,933...55,553,839
Ensembl chr 8:56,922,773...57,219,410
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BCL2
BCL2 apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8170972)
Ensembl MGI
PMID:8170972
GO_REF:0000107
NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
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TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:55,246,933...55,553,839
Ensembl chr 8:56,922,773...57,219,410
G
IL15
interleukin 15
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10704459)
Ensembl MGI
PMID:10704459
GO_REF:0000107
NCBI chr 4:133,693,995...134,115,470
Ensembl chr 4:145,402,111...145,416,622
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PTPN2
protein tyrosine phosphatase non-receptor type 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:1,440,837...1,538,501
Ensembl chr18:16,562,052...16,659,570
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CD69
CD69 molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:9,800,446...9,808,874
Ensembl chr12:10,049,668...10,058,094
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JAK3
Janus kinase 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:17,299,129...17,330,700
Ensembl chr19:18,283,560...18,300,964
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LGALS1
galectin 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:18,593,154...18,597,432
Ensembl chr22:36,426,228...36,430,356
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LOC100988550
signal transducer and activator of transcription 5A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:15,005,025...15,029,110
Ensembl chr17:15,228,465...15,251,783
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LOXL3
lysyl oxidase like 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr2A:74,598,870...74,622,502
Ensembl chr2A:76,105,957...76,128,495
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TBX21
T-box transcription factor 21
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:9,791,008...9,803,894
Ensembl chr17:9,973,920...9,985,660
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TNFSF18
TNF superfamily member 18
involved_in
ISO
(PMID:24107315)
UniProt
PMID:24107315
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THEMIS
thymocyte selection associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:125,489,491...125,685,995
Ensembl chr 6:129,601,176...129,797,112
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AIRE
autoimmune regulator
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23382543)
Ensembl MGI
PMID:23382543
GO_REF:0000107
NCBI chr21:30,543,018...30,556,225
Ensembl chr21:43,837,340...43,848,974
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ATG5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23382543)
Ensembl MGI
PMID:23382543
GO_REF:0000107
NCBI chr 6:103,997,824...104,140,931
Ensembl chr 6:107,871,208...108,013,807
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CCR7
C-C motif chemokine receptor 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:16,720,236...16,731,955
Ensembl chr17:16,949,119...16,956,370
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CD28
CD28 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10429671)
Ensembl MGI
PMID:10429671
GO_REF:0000107
NCBI chr2B:90,938,795...90,971,438
Ensembl chr2B:209,076,388...209,111,213
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CD74
CD74 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7679955)
Ensembl MGI
PMID:7679955
GO_REF:0000107
NCBI chr 5:145,825,635...145,836,916
Ensembl chr 5:151,830,311...151,841,334
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DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 5:165,000,368...165,447,148
Ensembl chr 5:171,778,952...172,206,238
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FAS
Fas cell surface death receptor
acts_upstream_of_or_within
ISO
(PMID:10429671)
MGI
PMID:10429671
NCBI chr10:85,707,457...85,741,539
Ensembl chr10:89,217,949...89,243,612
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GLI3
GLI family zinc finger 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
G
LOC100971372
tyrosine-protein kinase ZAP-70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7630421)
Ensembl MGI
PMID:7630421
GO_REF:0000107
NCBI chr2A:101,582,567...101,613,175
Ensembl chr2A:98,613,740...98,639,088
G
LOC100978919
T-cell surface glycoprotein CD3 epsilon chain
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7630421)
Ensembl MGI
PMID:7630421
GO_REF:0000107
NCBI chr11:113,142,200...113,153,928
Ensembl chr11:117,074,041...117,085,625
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MINK1
misshapen like kinase 1
acts_upstream_of_or_within
ISO
(PMID:15608642)
MGI
PMID:15608642
NCBI chr17:4,879,851...4,944,374
Ensembl chr17:4,868,620...4,932,789
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PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 1:174,246,389...174,364,893
Ensembl chr 1:178,556,104...178,672,994
G
SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
G
SPN
sialophorin
acts_upstream_of_or_within
ISO
(PMID:10429671)
MGI
PMID:10429671
Ensembl chr16:30,035,243...30,036,445
G
BRD2
bromodomain containing 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
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BRD4
bromodomain containing 4
involved_in
ISO
(PMID:28262505)
UniProt
PMID:28262505
NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600
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EP300
E1A binding protein p300
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
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IL23A
interleukin 23 subunit alpha
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr12:32,575,321...32,576,856
Ensembl chr12:32,828,902...32,830,617
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OPA1
OPA1 mitochondrial dynamin like GTPase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:190,890,242...190,995,133
Ensembl chr 3:201,207,607...201,312,358
G
BCL11B
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
(PMID:17998389)
MGI
PMID:17998389
NCBI chr14:79,795,262...79,898,472
G
BRAF
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
(PMID:23334952)
MGI
PMID:23334952
NCBI chr 7:132,651,908...132,855,422
Ensembl chr 7:145,138,510...145,327,115
G
THEMIS
thymocyte selection associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:125,489,491...125,685,995
Ensembl chr 6:129,601,176...129,797,112
G
CD1D
CD1d molecule
acts_upstream_of_or_within
ISO
(PMID:9133426)
MGI
PMID:9133426
NCBI chr 1:133,549,258...133,557,752
Ensembl chr 1:137,341,690...137,348,173
G
CD74
CD74 molecule
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9432982) (PMID:7679955), (PMID:8598040)
Ensembl MGI
PMID:7679955 PMID:8598040 PMID:9432982
GO_REF:0000107
NCBI chr 5:145,825,635...145,836,916
Ensembl chr 5:151,830,311...151,841,334
G
DOCK2
dedicator of cytokinesis 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12871644)
Ensembl MGI
PMID:12871644
GO_REF:0000107
NCBI chr 5:165,000,368...165,447,148
Ensembl chr 5:171,778,952...172,206,238
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ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15064401)
Ensembl MGI
PMID:15064401
GO_REF:0000107
NCBI chr 1:202,091,263...202,198,880
Ensembl chr 1:207,084,883...207,191,678
G
LOC100968989
HLA class II histocompatibility antigen, DM alpha chain
acts_upstream_of_or_within
ISO
(PMID:8638109) (PMID:8598040) (PMID:8598041), (PMID:9432982)
MGI
PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982
NCBI chr 6:32,518,060...32,537,989
Ensembl chr 6:33,634,123...33,637,988
G
LOC100971372
tyrosine-protein kinase ZAP-70
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:7630421)
MGI Ensembl
PMID:7630421
GO_REF:0000107
NCBI chr2A:101,582,567...101,613,175
Ensembl chr2A:98,613,740...98,639,088
G
LOC100978919
T-cell surface glycoprotein CD3 epsilon chain
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr11:113,142,200...113,153,928
Ensembl chr11:117,074,041...117,085,625
G
LOC100979261
T-cell surface glycoprotein CD3 gamma chain
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr11:113,179,270...113,190,104
Ensembl chr11:117,111,132...117,120,566
G
LOC100979946
T-cell surface glycoprotein CD3 delta chain
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr11:113,174,007...113,179,244
Ensembl chr11:117,105,868...117,111,051
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NFATC3
nuclear factor of activated T cells 3
involved_in
ISO
(PMID:17579027)
UniProt
PMID:17579027
NCBI chr16:48,456,144...48,603,306
Ensembl chr16:67,888,806...67,996,274
G
PTPRC
protein tyrosine phosphatase receptor type C
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8666928)
Ensembl MGI
PMID:8666928
GO_REF:0000107
NCBI chr 1:174,246,389...174,364,893
Ensembl chr 1:178,556,104...178,672,994
G
SHH
sonic hedgehog signaling molecule
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
G
SRF
serum response factor
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21098124)
Ensembl MGI
PMID:21098124
GO_REF:0000107
NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768
G
STK11
serine/threonine kinase 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21487392)
Ensembl MGI
PMID:21487392
GO_REF:0000107
Ensembl chr19:1,188,537...1,210,677
G
FOXN1
forkhead box N1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:28,237,150...28,272,010
Ensembl chr17:28,740,775...28,773,592
G
TOX
thymocyte selection associated high mobility group box
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:55,246,933...55,553,839
Ensembl chr 8:56,922,773...57,219,410
G
IL4
interleukin 4
acts_upstream_of_or_within
ISO
(PMID:20706986)
MGI
PMID:20706986
NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
G
MTOR
mechanistic target of rapamycin kinase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841
G
SPN
sialophorin
involved_in
IEA
Ensembl
GO_REF:0000107
Ensembl chr16:30,035,243...30,036,445
G
STAT6
signal transducer and activator of transcription 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:20706986)
Ensembl MGI
PMID:20706986
GO_REF:0000107
Ensembl chr12:32,068,679...32,085,099
G
TBX21
T-box transcription factor 21
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:9,791,008...9,803,894
Ensembl chr17:9,973,920...9,985,660
G
BATF
basic leucine zipper ATF-like transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:56,075,768...56,100,749
Ensembl chr14:74,919,115...74,943,652
G
IL6
interleukin 6
involved_in
ISO
(PMID:27893700) (PMID:16990136)
UniProt
PMID:16990136 PMID:27893700
NCBI chr 7:23,415,922...23,420,767
G
IL6R
interleukin 6 receptor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:129,761,914...129,824,386
Ensembl chr 1:133,374,078...133,433,089
G
IRF4
interferon regulatory factor 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:206,282...226,487
Ensembl chr 6:342,718...356,654
G
LY9
lymphocyte antigen 9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:136,151,608...136,185,365
Ensembl chr 1:140,075,646...140,107,784
G
OTUD5
OTU deubiquitinase 5
acts_upstream_of_or_within
ISO
(PMID:25470037)
MGI
PMID:25470037
NCBI chr X:41,219,536...41,256,219
G
SLAMF6
SLAM family member 6
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr 1:135,838,862...135,878,207
Ensembl chr 1:139,761,121...139,799,348
G
STAT3
signal transducer and activator of transcription 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067
G
CARD11
caspase recruitment domain family member 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12867038)
Ensembl MGI
PMID:12867038
GO_REF:0000107
NCBI chr 7:3,166,788...3,304,729
Ensembl chr 7:3,258,736...3,332,999
G
GATA3
GATA binding protein 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14670303)
Ensembl MGI
PMID:14670303
GO_REF:0000107
NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272
G
ITPKB
inositol-trisphosphate 3-kinase B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:14517551)
Ensembl MGI
PMID:14517551
GO_REF:0000107
NCBI chr 1:202,091,263...202,198,880
Ensembl chr 1:207,084,883...207,191,678
G
JAG2
jagged canonical Notch ligand 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:85,785,586...85,812,056
Ensembl chr14:105,569,837...105,585,878
G
LOC100971372
tyrosine-protein kinase ZAP-70
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:9208839)
Ensembl MGI
PMID:9208839
GO_REF:0000107
NCBI chr2A:101,582,567...101,613,175
Ensembl chr2A:98,613,740...98,639,088
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