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ONTOLOGY REPORT - ANNOTATIONS


Term:cell cycle DNA replication
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Accession:GO:0044786 term browser browse the term
Definition:The DNA-dependent DNA replication that takes place as part of the cell cycle.



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DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:15767679) RGD PMID:15767679 NCBI chr 8:55,461,839...55,471,413
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO
IBA
(PMID:11125146)
GO_REF:0000033
RGD
GO_Central
PMID:11125146 GO_REF:0000033 NCBI chr19:67,529,249...67,534,195
Ensembl chr19:50,620,713...50,625,659
JBrowse link
G Gmnn geminin, DNA replication inhibitor involved_in ISO (PMID:11125146) RGD PMID:11125146 NCBI chr17:40,729,760...40,738,077
Ensembl chr17:40,301,808...40,310,054
JBrowse link
DNA synthesis involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 IMP RGD PMID:15696186 RGD:2301349 NCBI chr 7:1,714,392...1,721,964
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO (PMID:14697231) RGD PMID:14697231 NCBI chr10:103,533,449...103,544,818
Ensembl chr10:103,031,521...103,046,920
JBrowse link
mitotic DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC129365.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:141,551,434...141,554,016 JBrowse link
G Gins3 GINS complex subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:122,903,679...122,918,205
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:30,715,602...30,733,746
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:98,762,599...98,776,300
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr  X:62,028,475...62,342,455
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
mitotic DNA replication termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtfdc1 replication termination factor 2 domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:181,624,798...181,656,104
Ensembl chr 3:161,208,049...161,237,687
JBrowse link
mitotic DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Recql5 RecQ like helicase 5 involved_in ISO (PMID:28575661) RGD PMID:28575661 NCBI chr10:101,625,477...101,664,582
Ensembl chr10:101,126,547...101,165,652
JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in IEA
ISO
GO_REF:0000107
(PMID:21076401)
Ensembl
RGD
PMID:21076401 GO_REF:0000107 NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567
JBrowse link
G Rad51 RAD51 recombinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:126,554,210...126,578,888
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen involved_in ISO UniProtKB:Q0VGM9 (PMID:24115439) RGD PMID:24115439 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:24115439) RGD PMID:24115439 NCBI chr 3:188,778,329...188,842,877
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo5 F-box protein 5 involved_in ISO (PMID:17875940) RGD PMID:17875940 NCBI chr 1:44,601,412...44,607,781
Ensembl chr 1:42,196,068...42,202,437
JBrowse link
nuclear DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family, AAA domain containing 5 involved_in ISO MGI:4127920 (PMID:25404367) RGD PMID:25404367 NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,919,834...30,933,150
Ensembl chr11:30,923,239...30,932,889
JBrowse link
G Zfp830 zinc finger protein 830 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4950703 (PMID:21191184)
GO_Central
RGD
PMID:21191184 GO_REF:0000033 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
JBrowse link
Okazaki fragment processing involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig1 DNA ligase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,243,043...83,281,707
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f7 E2F transcription factor 7 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:23064266)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23064266 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:48,036,881...48,079,055
Ensembl chr 7:46,151,293...46,192,734
JBrowse link
G E2f8 E2F transcription factor 8 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:23064264), (PMID:23064266)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23064264 PMID:23064266 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:107,701,985...107,720,538
Ensembl chr 1:98,565,717...98,584,098
JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:2161540) RGD PMID:2161540 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350
JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX, chromatin remodeler involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:24651726)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24651726 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:74,916,548...75,062,880
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Cdc7 cell division cycle 7 involved_in ISO (PMID:15668232) RGD PMID:15668232 NCBI chr14:2,804,660...2,824,796
Ensembl chr14:2,804,661...2,824,778
JBrowse link
G Dbf4 DBF4-CDC7 kinase regulatory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:25,676,570...25,701,152
Ensembl chr 4:25,676,634...25,701,066
JBrowse link
G Dbf4b DBF4B-CDC7 kinase regulatory subunit involved_in ISO (PMID:15668232) RGD PMID:15668232 NCBI chr10:88,209,913...88,219,336 JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20237820) RGD PMID:20237820 NCBI chr 3:126,822,280...126,919,532
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Wiz WIZ zinc finger involved_in ISO (PMID:23545495) RGD PMID:23545495 NCBI chr 7:12,017,374...12,045,812
Ensembl chr 7:11,367,035...11,395,490
JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3832730 (PMID:19090619)
GO_REF:0000107
RGD
Ensembl
PMID:19090619 GO_REF:0000107 NCBI chr11:92,487,259...92,522,795
Ensembl chr11:78,981,432...79,018,238
JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:15980864) RGD PMID:15980864 NCBI chr 5:139,912,395...139,945,532
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:19734146) RGD PMID:19734146 NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Cdt1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within ISO (PMID:11850834) RGD PMID:11850834 NCBI chr19:67,529,249...67,534,195
Ensembl chr19:50,620,713...50,625,659
JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in ISO (PMID:16980615) RGD PMID:16980615 NCBI chr15:80,936,063...81,317,746
Ensembl chr15:74,529,208...74,909,922
JBrowse link
G Ilkap ILK associated serine/threonine phosphatase IDA RGD PMID:9857069 RGD:632254 NCBI chr 9:91,966,440...91,988,791
Ensembl chr 9:91,966,441...91,988,892
JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in ISO (PMID:19734146) RGD PMID:19734146 NCBI chr15:43,997,446...44,041,716
Ensembl chr15:39,821,855...39,866,122
JBrowse link
telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:21829167) RGD PMID:21829167 NCBI chr16:19,110,531...19,131,327
Ensembl chr16:19,076,322...19,096,568
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      cell cycle process 1310
        cell cycle DNA replication 38
          DNA endoreduplication + 5
          DNA strand elongation involved in cell cycle DNA replication + 0
          bacterial-type DNA replication + 0
          cell cycle DNA replication initiation + 6
          cell cycle DNA replication maintenance of fidelity + 2
          cell cycle DNA replication termination + 1
          nuclear DNA replication + 33
          pre-replicative complex assembly involved in cell cycle DNA replication + 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5944
            nucleic acid metabolic process 5329
              DNA metabolic process 967
                DNA replication 273
                  DNA-templated DNA replication 155
                    cell cycle DNA replication 38
                      DNA endoreduplication + 5
                      DNA strand elongation involved in cell cycle DNA replication + 0
                      bacterial-type DNA replication + 0
                      cell cycle DNA replication initiation + 6
                      cell cycle DNA replication maintenance of fidelity + 2
                      cell cycle DNA replication termination + 1
                      nuclear DNA replication + 33
                      pre-replicative complex assembly involved in cell cycle DNA replication + 0
paths to the root